Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006036

Physical Location & Seq

Genomic Coordinates Forward (+)

56148590 .. 56152790

Gene Structure 4201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG414300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTCCTCTAGTCGAGATGGGTTCAAGGAGGATTTTGGTTGGAGGATGCAAACAGCAAGAGGGCGTCTCAAGGCCCTGAAAGACTGTGACAGACTCAAGGAGGAAGATCAAAATTGGTGTCGCCGATCTTTGGCGTGGAATGGATCTCAGCCTTTGAAGCTTGTAGGCGGCGGAGGGGCGCTCGGAGTTGAGGTTTTTCTGGTTGCAAGGGCTCGCCGCACAACAATGATTGATTTCATGCTACAATATGTTAAGATGTCGGTGATAGGCAGCGCACACCGATTGATGGTAGTGAACAGGGCTGCCATCACTGATGAGGCAGGTTTCACTGTTTCAGTCAATGCTTTGTGGCACTGCTGGAACTTGAGAGCAGCGCTTGCTACTGGAACACGGGAGAGCCAGGGGGCTGCTGCTGGGATTTTACGAACCAACGGCCGTCACCCGGATTTTGAGGGCAAAAATGGTGCCCAGCGATATCGTCGGGGCTCGACGACAATACGGCATCCCAATGTACACCATGTCGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

19.62

Weight (kDa)

10.43

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28050
malus_domestica	MD03G1124300.v1.1 MD04G1147300.v1.1
prunus_persica	Prupe.6G107000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0398231 RchiOBHm_Chr5g0057911 RchiOBHm_Chr5g0057961 RchiOBHm_Chr5g0058011 RchiOBHm_Chr5g0058021 RchiOBHm_Chr5g0058061 RchiOBHm_Chr5g0058071
rosa_laevigata	RLG00000019928 RLG00000035191 RLG00000035192
rosa_multiflora	Rmu_sc0000367.1_g000007
rosa_roxburghii	Rroxscaffold_1G00022520 Rroxscaffold_1G00022530
rosa_rugosa	Rorug05G0310700
rosa_samantha	Rh4DG434800 Rh5AG379300 Rh5AG379400 Rh5BG390500 Rh5CG414300 Rh5CG414400 Rh5DG405100
rosa_wichuraiana	Rw5G035710 Rw5G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	464
AciI	CCGC	3 cut(s)	168, 171, 217
AclWI	GGATC	1 cut(s)	151
AcoI	YGGCCR	1 cut(s)	433
AcyI	GRCGYC	1 cut(s)	64
AfaI	GTAC	1 cut(s)	513
AfeI	AGCGCT	1 cut(s)	375
AfiI	CCNNNNNNNGG	3 cut(s)	130, 286, 442
AgsI	TTSAA	2 cut(s)	25, 157
AjnI	CCWGG	1 cut(s)	399
AluBI	AGCT	2 cut(s)	160, 527
AluI	AGCT	2 cut(s)	160, 527
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	1 cut(s)	151
Aor51HI	AGCGCT	1 cut(s)	375
AoxI	GGCC	2 cut(s)	72, 433
ApeKI	GCWGC	5 cut(s)	270, 302, 371, 407, 410
ArsI	GACNNNNNNTTYG	2 cut(s)	103, 135
AspLEI	GCGC	3 cut(s)	181, 275, 376
AspS9I	GGNCC	1 cut(s)	73
AsuC2I	CCSGG	1 cut(s)	443
AsuHPI	GGTGA	2 cut(s)	274, 431
BaeGI	GKGCMC	1 cut(s)	469
BanI	GGYRCC	1 cut(s)	464
BanII	GRGCYC	2 cut(s)	214, 488
BbvI	GCAGC	5 cut(s)	282, 289, 383, 394, 397
BccI	CCATC	3 cut(s)	11, 280, 314
BceAI	ACGGC	3 cut(s)	420, 448, 515
BciT130I	CCWGG	1 cut(s)	401
BcnI	CCSGG	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	9
BfoI	RGCGCY	2 cut(s)	182, 377
BfuAI	ACCTGC	1 cut(s)	311
BisI	GCNGC	7 cut(s)	169, 217, 271, 303, 372, 408, 411
BlsI	GCNGC	7 cut(s)	170, 218, 272, 304, 373, 409, 412
Bme1390I	CCNGG	2 cut(s)	401, 443
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	466
BmrFI	CCNGG	2 cut(s)	401, 443
BmsI	GCATC	2 cut(s)	36, 511
BplI	GAGNNNNNCTC	4 cut(s)	51, 83, 165, 197
BpuEI	CTTGAG	3 cut(s)	53, 80, 385
BpuMI	CCSGG	1 cut(s)	443
BsaHI	GRCGYC	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 286, 442
Bse1I	ACTGG	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	1 cut(s)	400
BseGI	GGATG	2 cut(s)	51, 502
BseLI	CCNNNNNNNGG	3 cut(s)	130, 286, 442
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	388
BseSI	GKGCMC	1 cut(s)	469
BseX3I	CGGCCG	1 cut(s)	433
BseXI	GCAGC	5 cut(s)	282, 289, 383, 394, 397
BseYI	CCCAGC	2 cut(s)	413, 468
Bsh1285I	CGRYCG	1 cut(s)	436
BshFI	GGCC	2 cut(s)	74, 435
BshNI	GGYRCC	1 cut(s)	464
BsiEI	CGRYCG	1 cut(s)	436
BsiSI	CCGG	1 cut(s)	443
BslI	CCNNNNNNNGG	3 cut(s)	130, 286, 442
BsmAI	GTCTC	1 cut(s)	71
BsmBI	CGTCTC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	74, 435
Bsp1286I	GDGCHC	3 cut(s)	214, 469, 488
Bsp1407I	TGTACA	1 cut(s)	511
Bsp143I	GATC	3 cut(s)	106, 125, 143
BspACI	CCGC	3 cut(s)	168, 171, 217
BspANI	GGCC	2 cut(s)	74, 435
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	466
BspMI	ACCTGC	1 cut(s)	311
BspPI	GGATC	1 cut(s)	151
BspT107I	GGYRCC	1 cut(s)	464
BsrGI	TGTACA	1 cut(s)	511
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	3 cut(s)	106, 125, 143
BssNI	GRCGYC	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	2 cut(s)	86, 331
BstACI	GRCGYC	1 cut(s)	64
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstAUI	TGTACA	1 cut(s)	511
BstC8I	GCNNGC	2 cut(s)	214, 378
BstDEI	CTNAG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	51, 502
BstH2I	RGCGCY	2 cut(s)	182, 377
BstHHI	GCGC	3 cut(s)	181, 275, 376
BstKTI	GATC	3 cut(s)	109, 128, 146
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	3 cut(s)	106, 125, 143
BstMCI	CGRYCG	1 cut(s)	436
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 377
BstNI	CCWGG	1 cut(s)	401
BstSCI	CCNGG	2 cut(s)	399, 441
BstSLI	GKGCMC	1 cut(s)	469
BstV1I	GCAGC	5 cut(s)	282, 289, 383, 394, 397
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BstZI	CGGCCG	1 cut(s)	433
BsuRI	GGCC	2 cut(s)	74, 435
BtsCI	GGATG	2 cut(s)	51, 502
BtsI	GCAGTG	1 cut(s)	352
BtsIMutI	CAGTG	3 cut(s)	309, 327, 352
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	2 cut(s)	214, 378
CfoI	GCGC	3 cut(s)	181, 275, 376
Cfr13I	GGNCC	1 cut(s)	73
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	512
CviAII	CATG	2 cut(s)	238, 518
CviQI	GTAC	1 cut(s)	512
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	3 cut(s)	108, 127, 145
DpnII	GATC	3 cut(s)	106, 125, 143
EaeI	YGGCCR	1 cut(s)	433
EagI	CGGCCG	1 cut(s)	433
EciI	GGCGGA	1 cut(s)	186
EclXI	CGGCCG	1 cut(s)	433
Eco24I	GRGCYC	2 cut(s)	214, 488
Eco32I	GATATC	1 cut(s)	476
Eco47III	AGCGCT	1 cut(s)	375
Eco52I	CGGCCG	1 cut(s)	433
EcoO109I	RGGNCCY	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	399
EcoRV	GATATC	1 cut(s)	476
EcoT38I	GRGCYC	2 cut(s)	214, 488
Esp3I	CGTCTC	1 cut(s)	71
FaeI	CATG	2 cut(s)	241, 521
FaiI	YATR	3 cut(s)	239, 249, 519
FatI	CATG	2 cut(s)	237, 517
Fnu4HI	GCNGC	7 cut(s)	169, 217, 271, 303, 372, 408, 411
FokI	GGATG	2 cut(s)	58, 489
FriOI	GRGCYC	2 cut(s)	214, 488
Fsp4HI	GCNGC	7 cut(s)	169, 217, 271, 303, 372, 408, 411
FspBI	CTAG	1 cut(s)	9
GlaI	GCGC	3 cut(s)	180, 274, 375
GluI	GCNGC	7 cut(s)	169, 217, 271, 303, 372, 408, 411
GsaI	CCCAGC	2 cut(s)	417, 472
HaeII	RGCGCY	2 cut(s)	182, 377
HaeIII	GGCC	2 cut(s)	74, 435
HapII	CCGG	1 cut(s)	443
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	3 cut(s)	181, 275, 376
Hin1I	GRCGYC	1 cut(s)	64
Hin1II	CATG	2 cut(s)	241, 521
Hin6I	GCGC	3 cut(s)	179, 273, 374
HinP1I	GCGC	3 cut(s)	179, 273, 374
HindIII	AAGCTT	2 cut(s)	158, 525
HinfI	GANTC	1 cut(s)	93
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	2 cut(s)	274, 431
Hpy166II	GTNNAC	2 cut(s)	295, 514
Hpy188I	TCNGA	1 cut(s)	185
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	2 cut(s)	295, 514
Hpy99I	CGWCG	2 cut(s)	483, 493
HpyCH4III	ACNGT	2 cut(s)	86, 331
HpyCH4V	TGCA	2 cut(s)	49, 206
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 377
HpyF3I	CTNAG	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	64
Hsp92II	CATG	2 cut(s)	241, 521
HspAI	GCGC	3 cut(s)	179, 273, 374
Kzo9I	GATC	3 cut(s)	106, 125, 143
Lsp1109I	GCAGC	5 cut(s)	282, 289, 383, 394, 397
LweI	GCATC	2 cut(s)	36, 511
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	86, 437
MalI	GATC	3 cut(s)	108, 127, 145
MboI	GATC	3 cut(s)	106, 125, 143
MboII	GAAGA	1 cut(s)	116
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	3 cut(s)	214, 469, 488
MluCI	AATT	1 cut(s)	112
MlyI	GAGTC	1 cut(s)	87
MmeI	TCCRAC	1 cut(s)	20
MnlI	CCTC	9 cut(s)	16, 22, 36, 53, 94, 167, 184, 310, 445
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	2 cut(s)	224, 507
MspI	CCGG	1 cut(s)	443
MspR9I	CCNGG	2 cut(s)	401, 443
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	2 cut(s)	157, 377
NciI	CCSGG	1 cut(s)	443
NdeII	GATC	3 cut(s)	106, 125, 143
NlaIII	CATG	2 cut(s)	241, 521
NlaIV	GGNNCC	1 cut(s)	466
NmuCI	GTSAC	2 cut(s)	86, 437
PkrI	GCNGC	7 cut(s)	170, 218, 272, 304, 373, 409, 412
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	399
PspFI	CCCAGC	2 cut(s)	413, 468
PspGI	CCWGG	1 cut(s)	399
PspN4I	GGNNCC	1 cut(s)	466
PspPI	GGNCC	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	143
RsaI	GTAC	1 cut(s)	513
RsaNI	GTAC	1 cut(s)	512
RseI	CAYNNNNRTG	2 cut(s)	224, 507
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	7 cut(s)	169, 217, 271, 303, 372, 408, 411
Sau3AI	GATC	3 cut(s)	106, 125, 143
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	2 cut(s)	401, 443
SduI	GDGCHC	3 cut(s)	214, 469, 488
SetI	ASST	4 cut(s)	162, 195, 325, 529
SfaNI	GCATC	2 cut(s)	36, 511
SmiMI	CAYNNNNRTG	2 cut(s)	224, 507
SmlI	CTYRAG	3 cut(s)	68, 95, 364
SmoI	CTYRAG	3 cut(s)	68, 95, 364
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	3 cut(s)	168, 171, 217
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	2 cut(s)	399, 441
TaaI	ACNGT	2 cut(s)	86, 331
TaqI	TCGA	3 cut(s)	13, 488, 522
TasI	AATT	1 cut(s)	112
TatI	WGTACW	1 cut(s)	511
TauI	GCSGC	2 cut(s)	171, 219
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	3 cut(s)	316, 334, 359
TseFI	GTSAC	2 cut(s)	86, 437
TseI	GCWGC	5 cut(s)	270, 302, 371, 407, 410
Tsp45I	GTSAC	2 cut(s)	86, 437
TspDTI	ATGAA	1 cut(s)	226
TspRI	CASTG	3 cut(s)	316, 334, 359
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.