Rh4DG434800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0006036
Physical Location & Seq
Forward (+)
63832008 .. 63832259
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG434800.1

Sequence Viewer

Length: 252 bp
ATGAACCCTAGCCGCTATGGCTTGGGATTCCATTATCGGCGTCCATCTCCGAAGCATAGCGGATTTCTCCTCTCCGCCGCTCGAAGCTGTTTCGCAGCCTTCCAACATCAACCATGGGTGACAAACACCCAAGCGAACCTGCACTCCACGGGCATGTCCTCTAGTCGAGATGGGTTCAAGGAGGATTTTGTGGGAATTGGTTGGAGGATGCGACCAGCAAGAGGCCGTCTCAAGGCCCTGGAAAGACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.44

Weight (kDa)

11.44

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 147
AccBSI CCGCTC 1 cut(s) 80
AciI CCGC 4 cut(s) 13, 60, 75, 78
AcyI GRCGYC 1 cut(s) 40
AfiI CCNNNNNNNGG 2 cut(s) 221, 232
AgsI TTSAA 1 cut(s) 178
AjnI CCWGG 1 cut(s) 237
AloI GAACNNNNNNTCC 2 cut(s) 128, 160
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
Alw26I GTCTC 1 cut(s) 233
AoxI GGCC 2 cut(s) 223, 234
ApeKI GCWGC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 130
BbvI GCAGC 1 cut(s) 107
BccI CCATC 2 cut(s) 52, 164
BceAI ACGGC 1 cut(s) 210
BciT130I CCWGG 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 2 cut(s) 9, 162
BfuAI ACCTGC 1 cut(s) 147
BglI GCCNNNNNGGC 1 cut(s) 18
BisI GCNGC 3 cut(s) 13, 78, 96
BlsI GCNGC 3 cut(s) 14, 79, 97
Bme1390I CCNGG 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 239
BmsI GCATC 1 cut(s) 198
BplI GAGNNNNNCTC 2 cut(s) 213, 245
BpuEI CTTGAG 1 cut(s) 215
BsaHI GRCGYC 1 cut(s) 40
BsaJI CCNNGG 3 cut(s) 113, 147, 237
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 232
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 3 cut(s) 113, 147, 237
BseGI GGATG 1 cut(s) 213
BseLI CCNNNNNNNGG 2 cut(s) 221, 232
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 107
BsgI GTGCAG 1 cut(s) 125
BshFI GGCC 2 cut(s) 225, 236
BslI CCNNNNNNNGG 2 cut(s) 221, 232
BsmAI GTCTC 1 cut(s) 233
BsmBI CGTCTC 1 cut(s) 233
BsnI GGCC 2 cut(s) 225, 236
Bsp19I CCATGG 1 cut(s) 113
BspACI CCGC 4 cut(s) 13, 60, 75, 78
BspANI GGCC 2 cut(s) 225, 236
BspMI ACCTGC 1 cut(s) 147
BsrBI CCGCTC 1 cut(s) 80
BssECI CCNNGG 3 cut(s) 113, 147, 237
BssNI GRCGYC 1 cut(s) 40
BssT1I CCWWGG 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 249
BstACI GRCGYC 1 cut(s) 40
BstDSI CCRYGG 2 cut(s) 113, 147
BstF5I GGATG 1 cut(s) 213
BstMAI GTCTC 1 cut(s) 233
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstNI CCWGG 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 107
BsuRI GGCC 2 cut(s) 225, 236
BtgI CCRYGG 2 cut(s) 113, 147
BtsCI GGATG 1 cut(s) 213
BveI ACCTGC 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 235
CseI GACGC 1 cut(s) 29
CviAII CATG 2 cut(s) 114, 154
CviJI RGCY 6 cut(s) 12, 21, 87, 98, 225, 236
CviKI_1 RGCY 6 cut(s) 12, 21, 87, 98, 225, 236
EciI GGCGGA 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 113
Esp3I CGTCTC 1 cut(s) 233
FaeI CATG 2 cut(s) 117, 157
FaiI YATR 4 cut(s) 18, 57, 115, 155
FatI CATG 2 cut(s) 113, 153
Fnu4HI GCNGC 3 cut(s) 13, 78, 96
FokI GGATG 1 cut(s) 220
Fsp4HI GCNGC 3 cut(s) 13, 78, 96
FspBI CTAG 2 cut(s) 9, 162
GluI GCNGC 3 cut(s) 13, 78, 96
HaeIII GGCC 2 cut(s) 225, 236
HgaI GACGC 1 cut(s) 29
Hin1I GRCGYC 1 cut(s) 40
Hin1II CATG 2 cut(s) 117, 157
HinfI GANTC 1 cut(s) 27
HphI GGTGA 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4V TGCA 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 40
Hsp92II CATG 2 cut(s) 117, 157
LpnPI CCDG 3 cut(s) 152, 224, 228
Lsp1109I GCAGC 1 cut(s) 107
LweI GCATC 1 cut(s) 198
MaeI CTAG 2 cut(s) 9, 162
MaeIII GTNAC 1 cut(s) 118
MbiI CCGCTC 1 cut(s) 80
MluCI AATT 1 cut(s) 195
MmeI TCCRAC 2 cut(s) 127, 182
MnlI CCTC 5 cut(s) 80, 169, 175, 198, 215
MslI CAYNNNNRTG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 239
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 18
NcoI CCATGG 1 cut(s) 113
NlaIII CATG 2 cut(s) 117, 157
NmuCI GTSAC 1 cut(s) 118
NspI RCATGY 1 cut(s) 157
PfeI GAWTC 1 cut(s) 27
PkrI GCNGC 3 cut(s) 14, 79, 97
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspPI GGNCC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 152
SatI GCNGC 3 cut(s) 13, 78, 96
Sau96I GGNCC 1 cut(s) 235
ScrFI CCNGG 1 cut(s) 239
SetI ASST 2 cut(s) 89, 141
SfaNI GCATC 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 1 cut(s) 195
SsiI CCGC 4 cut(s) 13, 60, 75, 78
SspMI CTAG 2 cut(s) 9, 162
StyD4I CCNGG 1 cut(s) 237
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 249
TaqI TCGA 2 cut(s) 82, 166
TasI AATT 1 cut(s) 195
TauI GCSGC 2 cut(s) 15, 80
TfiI GAWTC 1 cut(s) 27
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 1 cut(s) 17
XceI RCATGY 1 cut(s) 157
XspI CTAG 2 cut(s) 9, 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.