Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006036

Physical Location & Seq

Genomic Coordinates Forward (+)

23558617 .. 23560560

Gene Structure 1944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1147300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGTTGAGAAAAGGGTATCGCCGGATGTGGTCGTTCATAATGCAATGCTGAATCGGCTTTGTATAGCAGGGAAGACCAAAGAGTTGTGGGAGGTGATGGTGAAGTGTGGTTGTTGTAATGTTGTTGATGAAGTGATTTCTGTCTGGGGACTAATGTGTGAGAAGGCTTGTGTTGCAGATGCCACAACCTATGGAGTTTTAGTCCATGGACTCTGTAAAAATGGGTATTTGAACAAGGCCTTGCAGATTTTAAAAGAGGCGGAAAACGCAAGAGCTGATCTGGATGCCTTTGCGTATTCGTCAATGATTAATGGGTTATGCAGGGAAGGGATACTAGATGAAGCAGCCAGACTAGTTGGCAATGCAGAAGATGCTTTGCAGCTTTATTTTCAGATGGGGCGCTGGAACTGCATTCCTTATCTTGTGACCTACAACACCCTAATGGAGGGTTTTTACAAAATTAGAGACTGTGAGAAGGCATCAGAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

164

Amino Acids

18.19

Weight (kDa)

5.24

Isoelectric Point (pI)

26.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	57 - 86	4e-08	PPR repeat
PPR_2	PF13041	60 - 108	2.2e-10	PPR repeat family
PPR_1	PF12854	94 - 119	4e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28050
malus_domestica	MD03G1124300.v1.1 MD04G1147300.v1.1
prunus_persica	Prupe.6G107000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0398231 RchiOBHm_Chr5g0057911 RchiOBHm_Chr5g0057961 RchiOBHm_Chr5g0058011 RchiOBHm_Chr5g0058021 RchiOBHm_Chr5g0058061 RchiOBHm_Chr5g0058071
rosa_laevigata	RLG00000019928 RLG00000035191 RLG00000035192
rosa_multiflora	Rmu_sc0000367.1_g000007
rosa_roxburghii	Rroxscaffold_1G00022520 Rroxscaffold_1G00022530
rosa_rugosa	Rorug05G0310700
rosa_samantha	Rh4DG434800 Rh5AG379300 Rh5AG379400 Rh5BG390500 Rh5CG414300 Rh5CG414400 Rh5DG405100
rosa_wichuraiana	Rw5G035710 Rw5G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	260
AfiI	CCNNNNNNNGG	1 cut(s)	445
AgsI	TTSAA	1 cut(s)	232
AhlI	ACTAGT	1 cut(s)	352
AluBI	AGCT	2 cut(s)	275, 382
AluI	AGCT	2 cut(s)	275, 382
Alw26I	GTCTC	1 cut(s)	459
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	2 cut(s)	344, 379
AseI	ATTAAT	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	402
AsuHPI	GGTGA	2 cut(s)	106, 112
BbsI	GAAGAC	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	356, 391
BccI	CCATC	2 cut(s)	91, 388
BciVI	GTATCC	1 cut(s)	324
BcoDI	GTCTC	1 cut(s)	459
BcuI	ACTAGT	1 cut(s)	352
BfaI	CTAG	2 cut(s)	335, 353
BfoI	RGCGCY	1 cut(s)	403
BfuI	GTATCC	1 cut(s)	324
BisI	GCNGC	2 cut(s)	345, 380
BlsI	GCNGC	2 cut(s)	346, 381
BmsI	GCATC	4 cut(s)	169, 274, 361, 488
BpiI	GAAGAC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse3DI	GCAATG	2 cut(s)	51, 367
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	2 cut(s)	31, 289
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMI	GCAATG	2 cut(s)	51, 367
BseXI	GCAGC	2 cut(s)	356, 391
BshFI	GGCC	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmAI	GTCTC	1 cut(s)	459
BsmFI	GGGAC	1 cut(s)	162
BsmI	GAATGC	1 cut(s)	411
BsnI	GGCC	1 cut(s)	239
Bsp143I	GATC	1 cut(s)	277
Bsp19I	CCATGG	1 cut(s)	205
BspACI	CCGC	1 cut(s)	260
BspANI	GGCC	1 cut(s)	239
BsrDI	GCAATG	2 cut(s)	51, 367
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	1 cut(s)	277
BssT1I	CCWWGG	1 cut(s)	205
Bst4CI	ACNGT	1 cut(s)	470
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstDSI	CCRYGG	1 cut(s)	205
BstENI	CCTNNNNNAGG	1 cut(s)	443
BstF5I	GGATG	2 cut(s)	31, 289
BstH2I	RGCGCY	1 cut(s)	403
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	5 cut(s)	55, 173, 266, 371, 408
BstV1I	GCAGC	2 cut(s)	356, 391
BstV2I	GAAGAC	1 cut(s)	80
BsuI	GTATCC	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	2 cut(s)	31, 289
CfoI	GCGC	1 cut(s)	402
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	6 cut(s)	58, 167, 239, 275, 347, 382
CviKI_1	RGCY	6 cut(s)	58, 167, 239, 275, 347, 382
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
DraI	TTTAAA	1 cut(s)	252
EciI	GGCGGA	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	205
Eco147I	AGGCCT	1 cut(s)	239
EcoNI	CCTNNNNNAGG	1 cut(s)	443
EcoT14I	CCWWGG	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	1 cut(s)	209
FaiI	YATR	5 cut(s)	39, 65, 192, 207, 319
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	1 cut(s)	205
Fnu4HI	GCNGC	2 cut(s)	345, 380
FokI	GGATG	2 cut(s)	38, 296
Fsp4HI	GCNGC	2 cut(s)	345, 380
FspBI	CTAG	2 cut(s)	335, 353
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	2 cut(s)	345, 380
HaeII	RGCGCY	1 cut(s)	403
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	1 cut(s)	23
HhaI	GCGC	1 cut(s)	402
Hin1II	CATG	1 cut(s)	209
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HinfI	GANTC	2 cut(s)	52, 210
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	2 cut(s)	106, 112
Hpy188I	TCNGA	2 cut(s)	393, 484
Hpy188III	TCNNGA	1 cut(s)	281
HpyAV	CCTTC	3 cut(s)	157, 320, 469
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4V	TGCA	7 cut(s)	44, 176, 244, 321, 365, 379, 411
HpyF10VI	GCNNNNNNNGC	5 cut(s)	55, 173, 266, 371, 408
Hsp92II	CATG	1 cut(s)	209
HspAI	GCGC	1 cut(s)	400
Kzo9I	GATC	1 cut(s)	277
LpnPI	CCDG	7 cut(s)	36, 54, 130, 266, 307, 361, 388
Lsp1109I	GCAGC	2 cut(s)	356, 391
LweI	GCATC	4 cut(s)	169, 274, 361, 488
MaeI	CTAG	2 cut(s)	335, 353
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	2 cut(s)	85, 380
MluCI	AATT	1 cut(s)	459
MlyI	GAGTC	1 cut(s)	204
MnlI	CCTC	3 cut(s)	85, 250, 439
MseI	TTAA	2 cut(s)	251, 309
MslI	CAYNNNNRTG	1 cut(s)	440
MspI	CCGG	1 cut(s)	23
Mva1269I	GAATGC	1 cut(s)	411
MwoI	GCNNNNNNNGC	5 cut(s)	55, 173, 266, 371, 408
NcoI	CCATGG	1 cut(s)	205
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	424
PceI	AGGCCT	1 cut(s)	239
PctI	GAATGC	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	346, 381
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
PshBI	ATTAAT	1 cut(s)	309
RseI	CAYNNNNRTG	1 cut(s)	440
SaqAI	TTAA	2 cut(s)	251, 309
SatI	GCNGC	2 cut(s)	345, 380
Sau3AI	GATC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	204
SetI	ASST	5 cut(s)	96, 191, 277, 384, 431
SfaNI	GCATC	4 cut(s)	169, 274, 361, 488
SmiMI	CAYNNNNRTG	1 cut(s)	440
SpeI	ACTAGT	1 cut(s)	352
Sse9I	AATT	1 cut(s)	459
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	1 cut(s)	260
SspMI	CTAG	2 cut(s)	335, 353
StuI	AGGCCT	1 cut(s)	239
StyI	CCWWGG	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	470
TasI	AATT	1 cut(s)	459
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	2 cut(s)	251, 309
Tru9I	TTAA	2 cut(s)	251, 309
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	2 cut(s)	344, 379
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	3 cut(s)	26, 144, 354
VspI	ATTAAT	1 cut(s)	309
XagI	CCTNNNNNAGG	1 cut(s)	443
XspI	CTAG	2 cut(s)	335, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.