RLG00000035191

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006036
Physical Location & Seq
Forward (+)
62624849 .. 62625346
498 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035191

Sequence Viewer

Length: 408 bp
ATGTCCTCTAGTCGACATGGGTTCAAGGAGGATTTTGTGGGAATTGGTTGGAGGATGTTCGATTTTGTGGGAATTGGTTGGAGGATGCGAACAGATAGAGGGCATCTCAAGGTCCTGAAAGACTGTAACAGACTCAAAGAGGAAGATCAAAATTGGTGTCGCCAATCTTTGGCCTGGAATCGGGTGGACTGGATCTCGACCTCCGAGGCTTGCGGCGAAGGGGCGCTCGGAGTTGAGGTTTTTCGGGCTGTCGGGGCTCGACGCACAATGATGATTGATTTCATGCTACAATCTGCTGGGATGACGATGACAGGCGGCCCACACAGATTGATGGCGGTGAACAGGGCTGCCATCGCTGATGAGGCAAGTTGGGTGCCCATATTAGTTGGGAGGCCCAACTCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.25

Weight (kDa)

9.05

Isoelectric Point (pI)

35.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 373
AccB7I CCANNNNNTGG 1 cut(s) 169
AccI GTMKAC 1 cut(s) 13
AciI CCGC 3 cut(s) 213, 315, 335
AclWI GGATC 1 cut(s) 200
AfiI CCNNNNNNNGG 2 cut(s) 169, 180
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 1 cut(s) 173
AlwI GGATC 1 cut(s) 200
AoxI GGCC 3 cut(s) 171, 316, 392
ApeKI GCWGC 1 cut(s) 347
ArsI GACNNNNNNTTYG 2 cut(s) 142, 174
AspLEI GCGC 1 cut(s) 226
AspS9I GGNCC 3 cut(s) 112, 317, 393
AsuHPI GGTGA 1 cut(s) 349
AvaII GGWCC 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 378
BanI GGYRCC 1 cut(s) 373
BanII GRGCYC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 334
BccI CCATC 2 cut(s) 325, 359
BciT130I CCWGG 1 cut(s) 175
BfaI CTAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 227
BisI GCNGC 3 cut(s) 214, 316, 348
BlsI GCNGC 3 cut(s) 215, 317, 349
Bme1390I CCNGG 1 cut(s) 175
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 3 cut(s) 112, 317, 393
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 1 cut(s) 175
BmsI GCATC 2 cut(s) 75, 112
BplI GAGNNNNNCTC 2 cut(s) 90, 122
BpuEI CTTGAG 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 180
Bse1I ACTGG 1 cut(s) 194
BseBI CCWGG 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 3 cut(s) 60, 90, 306
BseLI CCNNNNNNNGG 2 cut(s) 169, 180
BseNI ACTGG 1 cut(s) 194
BseSI GKGCMC 1 cut(s) 378
BseXI GCAGC 1 cut(s) 334
BseYI CCCAGC 1 cut(s) 296
BshFI GGCC 3 cut(s) 173, 318, 394
BshNI GGYRCC 1 cut(s) 373
BslI CCNNNNNNNGG 2 cut(s) 169, 180
BsnI GGCC 3 cut(s) 173, 318, 394
Bsp1286I GDGCHC 2 cut(s) 259, 378
Bsp143I GATC 2 cut(s) 145, 192
BspACI CCGC 3 cut(s) 213, 315, 335
BspANI GGCC 3 cut(s) 173, 318, 394
BspLI GGNNCC 1 cut(s) 375
BspPI GGATC 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 373
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 2 cut(s) 145, 192
Bst2UI CCWGG 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 211
BstF5I GGATG 3 cut(s) 60, 90, 306
BstH2I RGCGCY 1 cut(s) 227
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 2 cut(s) 148, 195
BstMBI GATC 2 cut(s) 145, 192
BstMWI GCNNNNNNNGC 3 cut(s) 254, 353, 362
BstNI CCWGG 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 173
BstSLI GKGCMC 1 cut(s) 378
BstV1I GCAGC 1 cut(s) 334
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BsuRI GGCC 3 cut(s) 173, 318, 394
BtgZI GCGATG 1 cut(s) 337
BtsCI GGATG 3 cut(s) 60, 90, 306
Cac8I GCNNGC 1 cut(s) 211
CfoI GCGC 1 cut(s) 226
Cfr13I GGNCC 3 cut(s) 112, 317, 393
CseI GACGC 1 cut(s) 270
CspCI CAANNNNNGTGG 2 cut(s) 309, 344
CviAII CATG 2 cut(s) 17, 283
CviJI RGCY 7 cut(s) 173, 209, 248, 257, 318, 347, 394
CviKI_1 RGCY 7 cut(s) 173, 209, 248, 257, 318, 347, 394
DpnI GATC 2 cut(s) 147, 194
DpnII GATC 2 cut(s) 145, 192
Eco24I GRGCYC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 112
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 173
EcoT38I GRGCYC 1 cut(s) 259
FaeI CATG 2 cut(s) 20, 286
FaiI YATR 3 cut(s) 18, 284, 380
FatI CATG 2 cut(s) 16, 282
FblI GTMKAC 1 cut(s) 13
Fnu4HI GCNGC 3 cut(s) 214, 316, 348
FokI GGATG 3 cut(s) 67, 97, 313
FriOI GRGCYC 1 cut(s) 259
Fsp4HI GCNGC 3 cut(s) 214, 316, 348
FspBI CTAG 1 cut(s) 9
GlaI GCGC 1 cut(s) 225
GluI GCNGC 3 cut(s) 214, 316, 348
GsaI CCCAGC 1 cut(s) 300
HaeII RGCGCY 1 cut(s) 227
HaeIII GGCC 3 cut(s) 173, 318, 394
HgaI GACGC 1 cut(s) 270
HhaI GCGC 1 cut(s) 226
Hin1II CATG 2 cut(s) 20, 286
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HincII GTYRAC 1 cut(s) 14
HindII GTYRAC 1 cut(s) 14
HinfI GANTC 2 cut(s) 132, 178
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 3 cut(s) 14, 187, 340
Hpy188I TCNGA 2 cut(s) 205, 230
Hpy188III TCNNGA 2 cut(s) 115, 196
Hpy8I GTNNAC 3 cut(s) 14, 187, 340
Hpy99I CGWCG 1 cut(s) 264
HpyAV CCTTC 1 cut(s) 212
HpyCH4III ACNGT 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 353, 362
Hsp92II CATG 2 cut(s) 20, 286
HspAI GCGC 1 cut(s) 224
Kzo9I GATC 2 cut(s) 145, 192
LpnPI CCDG 7 cut(s) 128, 160, 175, 187, 282, 297, 328
Lsp1109I GCAGC 1 cut(s) 334
LweI GCATC 2 cut(s) 75, 112
MaeI CTAG 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 125
MalI GATC 2 cut(s) 147, 194
MboI GATC 2 cut(s) 145, 192
MboII GAAGA 1 cut(s) 155
MflI RGATCY 1 cut(s) 192
MhlI GDGCHC 2 cut(s) 259, 378
MluCI AATT 4 cut(s) 42, 72, 151, 403
MlyI GAGTC 1 cut(s) 126
MmeI TCCRAC 2 cut(s) 29, 59
MslI CAYNNNNRTG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 175
MvaI CCWGG 1 cut(s) 175
MwoI GCNNNNNNNGC 3 cut(s) 254, 353, 362
NdeII GATC 2 cut(s) 145, 192
NlaIII CATG 2 cut(s) 20, 286
NlaIV GGNNCC 1 cut(s) 375
PfeI GAWTC 1 cut(s) 178
PflMI CCANNNNNTGG 1 cut(s) 169
PkrI GCNGC 3 cut(s) 215, 317, 349
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
PpuMI RGGWCCY 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 173
PspFI CCCAGC 1 cut(s) 296
PspGI CCWGG 1 cut(s) 173
PspN4I GGNNCC 1 cut(s) 375
PspPI GGNCC 3 cut(s) 112, 317, 393
PspPPI RGGWCCY 1 cut(s) 112
PsuI RGATCY 1 cut(s) 192
RseI CAYNNNNRTG 1 cut(s) 269
SalI GTCGAC 1 cut(s) 12
SatI GCNGC 3 cut(s) 214, 316, 348
Sau3AI GATC 2 cut(s) 145, 192
Sau96I GGNCC 3 cut(s) 112, 317, 393
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 1 cut(s) 175
SduI GDGCHC 2 cut(s) 259, 378
SetI ASST 3 cut(s) 114, 203, 240
SfaNI GCATC 2 cut(s) 75, 112
SinI GGWCC 1 cut(s) 112
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 4 cut(s) 42, 72, 151, 403
SsiI CCGC 3 cut(s) 213, 315, 335
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 173
TaaI ACNGT 1 cut(s) 125
TaqI TCGA 4 cut(s) 13, 60, 197, 259
TasI AATT 4 cut(s) 42, 72, 151, 403
TauI GCSGC 2 cut(s) 216, 318
TfiI GAWTC 1 cut(s) 178
TseI GCWGC 1 cut(s) 347
TspDTI ATGAA 1 cut(s) 271
Van91I CCANNNNNTGG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 13
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.