Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006036

Physical Location & Seq

Genomic Coordinates Forward (+)

56223628 .. 56226254

Gene Structure 2627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG414400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGACCTGATGACGCTCTGTTTGTTCAGCAAATCCAGCTGCTCCACCGAGATCCGACATCCTCATCTGCACCACTGGCGAGTTCACCACCACCTTCAACAACTAGCTCCGGCTCAGCCTGGACAGCACCTCCACATCACCGGTGCTGCAGAAGTTGCGTTTCAGGACAGGCAGGGAGTCGGCGGAGTCGGAGGCGACGATGGGCATGGCATGGAGGGCCACGACCTGAGGCTGGAGGAATCTAACATAGCTATTTTGTCGGGATGGGTTCAAGGAGGATTTTGGTTGGAGGATGCAAACAACAAGAGGGCGTCTCAAGGCCCGAAAGACAGTGACAGACTCAAGGAGGAAGATCAAAATTGGTGTCACCGATCTTTGGCGTGGAATGGGGTGGACTGCATCTCAGCCTCTGAGGCTTGTAGGCAACGCAATGCTTTTAGTATGCTTCTGGAAGTTAGAGCGGTGAAGAGAAGAGTGTCTCTGGTTCAATTTTGGATGGGTGTTGAAGGCGGCGAAGGGGCGCTCGGAGTTGAGGTTTTTCTGGTTGCAAGGGCTCGCCGCACAACAATGATTGATTTCATGCTACAATATGTTAAGATGACGGTGATAGGCGGCGCACATCGATTGATAGCGGTGAACAAGGCTGCCATCACTGATGAGGCAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

24.6

Weight (kDa)

6.49

Isoelectric Point (pI)

53.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28050
malus_domestica	MD03G1124300.v1.1 MD04G1147300.v1.1
prunus_persica	Prupe.6G107000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0398231 RchiOBHm_Chr5g0057911 RchiOBHm_Chr5g0057961 RchiOBHm_Chr5g0058011 RchiOBHm_Chr5g0058021 RchiOBHm_Chr5g0058061 RchiOBHm_Chr5g0058071
rosa_laevigata	RLG00000019928 RLG00000035191 RLG00000035192
rosa_multiflora	Rmu_sc0000367.1_g000007
rosa_roxburghii	Rroxscaffold_1G00022520 Rroxscaffold_1G00022530
rosa_rugosa	Rorug05G0310700
rosa_samantha	Rh4DG434800 Rh5AG379300 Rh5AG379400 Rh5BG390500 Rh5CG414300 Rh5CG414400 Rh5DG405100
rosa_wichuraiana	Rw5G035710 Rw5G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	653
AccBSI	CCGCTC	1 cut(s)	461
AciI	CCGC	6 cut(s)	183, 461, 510, 559, 612, 632
AclWI	GGATC	1 cut(s)	46
AcyI	GRCGYC	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	232, 376
AgeI	ACCGGT	1 cut(s)	140
AgsI	TTSAA	4 cut(s)	98, 272, 488, 506
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	3 cut(s)	39, 107, 251
AluI	AGCT	3 cut(s)	39, 107, 251
Alw26I	GTCTC	2 cut(s)	318, 483
AlwI	GGATC	1 cut(s)	46
AlwNI	CAGNNNCTG	1 cut(s)	410
AoxI	GGCC	2 cut(s)	217, 319
ApeKI	GCWGC	3 cut(s)	39, 146, 644
ArsI	GACNNNNNNTTYG	3 cut(s)	36, 349, 381
AsiGI	ACCGGT	1 cut(s)	140
AspLEI	GCGC	2 cut(s)	523, 617
AspS9I	GGNCC	3 cut(s)	4, 217, 320
AsuHPI	GGTGA	6 cut(s)	77, 130, 359, 475, 616, 646
AvaII	GGWCC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	556
BbvI	GCAGC	3 cut(s)	26, 133, 631
BccI	CCATC	4 cut(s)	194, 258, 490, 656
BciT130I	CCWGG	1 cut(s)	120
BcoDI	GTCTC	2 cut(s)	318, 483
BfaI	CTAG	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	147
BfoI	RGCGCY	1 cut(s)	524
BfuAI	ACCTGC	1 cut(s)	653
BglI	GCCNNNNNGGC	1 cut(s)	413
BisI	GCNGC	6 cut(s)	40, 147, 511, 559, 613, 645
BlpI	GCTNAGC	1 cut(s)	114
BlsI	GCNGC	6 cut(s)	41, 148, 512, 560, 614, 646
Bme1390I	CCNGG	1 cut(s)	120
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	3 cut(s)	4, 217, 320
BmrFI	CCNGG	1 cut(s)	120
BmsI	GCATC	2 cut(s)	283, 408
BplI	GAGNNNNNCTC	2 cut(s)	298, 330
BpmI	CTGGAG	1 cut(s)	254
Bpu1102I	GCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	2 cut(s)	300, 326
Bsa29I	ATCGAT	1 cut(s)	622
BsaHI	GRCGYC	1 cut(s)	311
BsaWI	WCCGGW	1 cut(s)	140
BsaXI	ACNNNNNCTCC	4 cut(s)	114, 144, 519, 549
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 376
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	80
Bse21I	CCTNAGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	436
BseBI	CCWGG	1 cut(s)	120
BseCI	ATCGAT	1 cut(s)	622
BseGI	GGATG	4 cut(s)	58, 269, 298, 501
BseLI	CCNNNNNNNGG	2 cut(s)	232, 376
BseMI	GCAATG	1 cut(s)	436
BseMII	CTCAG	4 cut(s)	128, 218, 402, 417
BseNI	ACTGG	1 cut(s)	80
BseXI	GCAGC	3 cut(s)	26, 133, 631
BsgI	GTGCAG	1 cut(s)	53
BshFI	GGCC	2 cut(s)	219, 321
BshTI	ACCGGT	1 cut(s)	140
BshVI	ATCGAT	1 cut(s)	622
BsiSI	CCGG	2 cut(s)	110, 141
BslI	CCNNNNNNNGG	2 cut(s)	232, 376
BsmAI	GTCTC	2 cut(s)	318, 483
BsmBI	CGTCTC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	219, 321
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp143I	GATC	3 cut(s)	51, 352, 371
Bsp1720I	GCTNAGC	1 cut(s)	114
BspACI	CCGC	6 cut(s)	183, 461, 510, 559, 612, 632
BspANI	GGCC	2 cut(s)	219, 321
BspCNI	CTCAG	4 cut(s)	127, 219, 403, 416
BspDI	ATCGAT	1 cut(s)	622
BspMAI	CTGCAG	1 cut(s)	151
BspMI	ACCTGC	1 cut(s)	653
BspPI	GGATC	1 cut(s)	46
BsrBI	CCGCTC	1 cut(s)	461
BsrDI	GCAATG	1 cut(s)	436
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	140
BssMI	GATC	3 cut(s)	51, 352, 371
BssNI	GRCGYC	1 cut(s)	311
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	332, 604
Bst6I	CTCTTC	2 cut(s)	461, 466
BstACI	GRCGYC	1 cut(s)	311
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	4 cut(s)	114, 227, 403, 411
BstF5I	GGATG	4 cut(s)	58, 269, 298, 501
BstH2I	RGCGCY	1 cut(s)	524
BstHHI	GCGC	2 cut(s)	523, 617
BstKTI	GATC	3 cut(s)	54, 355, 374
BstMAI	GTCTC	2 cut(s)	318, 483
BstMBI	GATC	3 cut(s)	51, 352, 371
BstMWI	GCNNNNNNNGC	6 cut(s)	36, 76, 124, 155, 216, 413
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	147
BstV1I	GCAGC	3 cut(s)	26, 133, 631
BstX2I	RGATCY	1 cut(s)	51
BstYI	RGATCY	1 cut(s)	51
Bsu15I	ATCGAT	1 cut(s)	622
Bsu36I	CCTNAGG	1 cut(s)	227
BsuRI	GGCC	2 cut(s)	219, 321
BsuTUI	ATCGAT	1 cut(s)	622
BtsCI	GGATG	4 cut(s)	58, 269, 298, 501
BtsIMutI	CAGTG	3 cut(s)	73, 337, 651
BveI	ACCTGC	1 cut(s)	653
Cac8I	GCNNGC	1 cut(s)	556
CaiI	CAGNNNCTG	1 cut(s)	410
CfoI	GCGC	2 cut(s)	523, 617
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	3 cut(s)	4, 217, 320
ClaI	ATCGAT	1 cut(s)	622
CseI	GACGC	2 cut(s)	22, 300
CspAI	ACCGGT	1 cut(s)	140
CviAII	CATG	3 cut(s)	206, 211, 580
DdeI	CTNAG	4 cut(s)	114, 227, 403, 411
DpnI	GATC	3 cut(s)	53, 354, 373
DpnII	GATC	3 cut(s)	51, 352, 371
Eam1104I	CTCTTC	2 cut(s)	461, 466
EarI	CTCTTC	2 cut(s)	461, 466
EciI	GGCGGA	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	4
Eco81I	CCTNAGG	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	556
Esp3I	CGTCTC	1 cut(s)	318
FaeI	CATG	3 cut(s)	209, 214, 583
FaiI	YATR	6 cut(s)	207, 212, 248, 443, 581, 591
FatI	CATG	3 cut(s)	205, 210, 579
Fnu4HI	GCNGC	6 cut(s)	40, 147, 511, 559, 613, 645
FokI	GGATG	4 cut(s)	45, 276, 305, 508
FriOI	GRGCYC	1 cut(s)	556
Fsp4HI	GCNGC	6 cut(s)	40, 147, 511, 559, 613, 645
FspBI	CTAG	1 cut(s)	104
GlaI	GCGC	2 cut(s)	522, 616
GluI	GCNGC	6 cut(s)	40, 147, 511, 559, 613, 645
GsuI	CTGGAG	1 cut(s)	254
HaeII	RGCGCY	1 cut(s)	524
HaeIII	GGCC	2 cut(s)	219, 321
HapII	CCGG	2 cut(s)	110, 141
HgaI	GACGC	2 cut(s)	22, 300
HhaI	GCGC	2 cut(s)	523, 617
Hin1I	GRCGYC	1 cut(s)	311
Hin1II	CATG	3 cut(s)	209, 214, 583
Hin6I	GCGC	2 cut(s)	521, 615
HinP1I	GCGC	2 cut(s)	521, 615
HinfI	GANTC	4 cut(s)	177, 186, 239, 339
HpaII	CCGG	2 cut(s)	110, 141
HphI	GGTGA	6 cut(s)	77, 130, 359, 475, 616, 646
Hpy166II	GTNNAC	3 cut(s)	85, 394, 637
Hpy188I	TCNGA	4 cut(s)	56, 191, 412, 527
Hpy188III	TCNNGA	3 cut(s)	164, 261, 449
Hpy8I	GTNNAC	3 cut(s)	85, 394, 637
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	3 cut(s)	104, 500, 509
HpyCH4III	ACNGT	2 cut(s)	332, 604
HpyCH4V	TGCA	5 cut(s)	70, 149, 296, 399, 548
HpyF10VI	GCNNNNNNNGC	6 cut(s)	36, 76, 124, 155, 216, 413
HpyF3I	CTNAG	4 cut(s)	114, 227, 403, 411
Hsp92I	GRCGYC	1 cut(s)	311
Hsp92II	CATG	3 cut(s)	209, 214, 583
HspAI	GCGC	2 cut(s)	521, 615
Kzo9I	GATC	3 cut(s)	51, 352, 371
LmnI	GCTCC	2 cut(s)	47, 112
Lsp1109I	GCAGC	3 cut(s)	26, 133, 631
LweI	GCATC	2 cut(s)	283, 408
MaeI	CTAG	1 cut(s)	104
MaeIII	GTNAC	2 cut(s)	332, 365
MalI	GATC	3 cut(s)	53, 354, 373
MbiI	CCGCTC	1 cut(s)	461
MboI	GATC	3 cut(s)	51, 352, 371
MboII	GAAGA	3 cut(s)	362, 478, 483
MflI	RGATCY	1 cut(s)	51
MhlI	GDGCHC	1 cut(s)	556
MluCI	AATT	2 cut(s)	358, 488
MlyI	GAGTC	3 cut(s)	186, 195, 333
MmeI	TCCRAC	3 cut(s)	79, 169, 267
MseI	TTAA	1 cut(s)	594
MslI	CAYNNNNRTG	1 cut(s)	566
MspA1I	CMGCKG	1 cut(s)	39
MspI	CCGG	2 cut(s)	110, 141
MspR9I	CCNGG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	6 cut(s)	36, 76, 124, 155, 216, 413
NdeII	GATC	3 cut(s)	51, 352, 371
NlaIII	CATG	3 cut(s)	209, 214, 583
NmuCI	GTSAC	2 cut(s)	332, 365
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	239
PinAI	ACCGGT	1 cut(s)	140
PkrI	GCNGC	6 cut(s)	41, 148, 512, 560, 614, 646
PleI	GAGTC	3 cut(s)	185, 194, 333
PpsI	GAGTC	3 cut(s)	185, 194, 333
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspPI	GGNCC	3 cut(s)	4, 217, 320
PstI	CTGCAG	1 cut(s)	151
PstNI	CAGNNNCTG	1 cut(s)	410
PsuI	RGATCY	1 cut(s)	51
PvuII	CAGCTG	1 cut(s)	39
RseI	CAYNNNNRTG	1 cut(s)	566
SaqAI	TTAA	1 cut(s)	594
SatI	GCNGC	6 cut(s)	40, 147, 511, 559, 613, 645
Sau3AI	GATC	3 cut(s)	51, 352, 371
Sau96I	GGNCC	3 cut(s)	4, 217, 320
SchI	GAGTC	3 cut(s)	186, 195, 333
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	556
SetI	ASST	9 cut(s)	9, 41, 96, 109, 132, 228, 253, 537, 667
SfaNI	GCATC	2 cut(s)	283, 408
SfcI	CTRYAG	1 cut(s)	147
SgrAI	CRCCGGYG	1 cut(s)	140
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	566
SmlI	CTYRAG	2 cut(s)	315, 341
SmoI	CTYRAG	2 cut(s)	315, 341
Sse9I	AATT	2 cut(s)	358, 488
SsiI	CCGC	6 cut(s)	183, 461, 510, 559, 612, 632
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	1 cut(s)	118
TaaI	ACNGT	2 cut(s)	332, 604
TaqI	TCGA	1 cut(s)	622
TasI	AATT	2 cut(s)	358, 488
TauI	GCSGC	3 cut(s)	513, 561, 615
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	3 cut(s)	80, 337, 658
TseFI	GTSAC	2 cut(s)	332, 365
TseI	GCWGC	3 cut(s)	39, 146, 644
Tsp45I	GTSAC	2 cut(s)	332, 365
TspDTI	ATGAA	1 cut(s)	568
TspRI	CASTG	3 cut(s)	80, 337, 658
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.