Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004109

Physical Location & Seq

Genomic Coordinates Forward (+)

12004658 .. 12006276

Gene Structure 1619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G28160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGAAGGAAGAGTCAACGCTCTGTCAAACATAAACGATCTCGAACTTCACAATTTCTTGGTCGATCCAAACTTCGATCAGTTCATAAACCTCATAAGAGGAGATCATCAAACCATTGACGAAAACCCAGTTCTTGATTTCGATCTTGGTCCATTACAAAACAGCCCCTGTTTCATAGACGAGAACCAGTTCATCCCAACACCTGTCGATGACCTCTTCGACGAATTGCCTGACTTAGACTCCAACGTTGCTGAATCATTCCGTAGCTTCGACGGTGATAGTGTTAGAGCCGGTGGTGAAGAAGATGAAGAAGATTACAACGACGGTGATGATTCTTCAGCCACTACTACGAATAATGATGGGACCCGTAAGACGAAGACTGATCGGTCTAGGACTTTGATCTCTGAGAGAAGAAGGAGAGGGCGTATGAAGGATAAGCTTTATGCATTGAGATCTCTTGTTCCCAATATTACTAAGATGGATAAAGCATCCATTGTTGGAGATGCAGTGTTGTATGTTCAAGAACTTCAGTCACAAGCGAAGAAACTCAAATCCGATATCGCGGGTCTTGAAGCTTCTTTAAACTCTACTGGAGGGTACCAAGAACATGCTCCTGATGCTCAAAAGACTCAACCTTTTCGCGGTATCAATCCTCCTGCTTCCAAAAAAATCATTCAGATGGATGTTATACAAGTGGAGGAGAAAGGGTTTTATGTGAGATTGGTGTGTAACAAAGGAGAAGGTGTTGCTCCATCTCTTTACAAGTCTTTGGAGTCTCTTACAAGTTTCCAAGTGCAGAACTCTAACCTAAGCTCTCCTTCTCCGGACACATACCTCTTAACATATACCTTAGATGGGACATGCTTCGAACAGAGCTTAAACTTGCCTAACCTGAAGCTGTGGATCACTGGATCACTTTTAAATCAAGGTTTTGAATTCATCAAGTCATTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006979 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010468 GO:0010556 GO:0010959 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032870 GO:0032879 GO:0033554 GO:0034599 GO:0034614 GO:0034756 GO:0035690 GO:0042221 GO:0042493 GO:0043269 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071731 GO:0071732 GO:0080090 GO:0097366 GO:0140110 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

318

Amino Acids

35.52

Weight (kDa)

4.59

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	132 - 177	9.7e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0004109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28160 AT2G28160
fragaria_vesca	FvH4_3g30650 FvH4_3g30660 FvH4_3g30660
malus_domestica	MD03G1127500.v1.1 MD03G1127600.v1.1 MD03G1129100.v1.1
prunus_persica	Prupe.6G112500_v2.0.a1 Prupe.6G112600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056871 RchiOBHm_Chr5g0056881
rosa_laevigata	RLG00000035133 RLG00000035134
rosa_multiflora	Rmu_sc0001460.1_g000011 Rmu_sc0001460.1_g000020
rosa_roxburghii	Rroxscaffold_1G00023420 Rroxscaffold_1G00023430
rosa_rugosa	Rorug05G0302900 Rorug05G0303000 Rorug05G0303200 Rorug05G0303300
rosa_samantha	Rh5AG373100 Rh5AG373300 Rh5BG384200 Rh5BG384300 Rh5CG407300 Rh5CG407500 Rh5DG397300 Rh5DG397600
rosa_wichuraiana	Rw5G034980 Rw5G035090 Rw5G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	385
Acc65I	GGTACC	1 cut(s)	597
AccB1I	GGYRCC	1 cut(s)	597
AccII	CGCG	2 cut(s)	563, 642
AccIII	TCCGGA	1 cut(s)	823
AciI	CCGC	2 cut(s)	563, 642
AclI	AACGTT	1 cut(s)	246
AclWI	GGATC	3 cut(s)	59, 911, 919
AcsI	RAATTY	1 cut(s)	935
AcuI	CTGAAG	3 cut(s)	321, 512, 914
AfaI	GTAC	1 cut(s)	599
AfiI	CCNNNNNNNGG	2 cut(s)	641, 855
AgsI	TTSAA	3 cut(s)	521, 572, 935
AluBI	AGCT	6 cut(s)	267, 439, 575, 813, 876, 898
AluI	AGCT	6 cut(s)	267, 439, 575, 813, 876, 898
Alw26I	GTCTC	1 cut(s)	780
AlwI	GGATC	3 cut(s)	59, 911, 919
AlwNI	CAGNNNCTG	1 cut(s)	168
Aor13HI	TCCGGA	1 cut(s)	823
ApoI	RAATTY	1 cut(s)	935
Asp700I	GAANNNNTTC	1 cut(s)	188
Asp718I	GGTACC	1 cut(s)	597
AspS9I	GGNCC	2 cut(s)	149, 363
AsuHPI	GGTGA	3 cut(s)	287, 308, 338
AsuII	TTCGAA	1 cut(s)	867
AvaII	GGWCC	2 cut(s)	149, 363
BanI	GGYRCC	1 cut(s)	597
BbsI	GAAGAC	1 cut(s)	383
BccI	CCATC	5 cut(s)	353, 472, 673, 760, 848
BcoDI	GTCTC	1 cut(s)	780
BfaI	CTAG	1 cut(s)	390
BglII	AGATCT	1 cut(s)	452
Bme18I	GGWCC	2 cut(s)	149, 363
BmgT120I	GGNCC	2 cut(s)	149, 363
BmiI	GGNNCC	3 cut(s)	364, 365, 599
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	3 cut(s)	493, 497, 607
BmuI	ACTGGG	1 cut(s)	122
BpiI	GAAGAC	1 cut(s)	383
BpmI	CTGGAG	1 cut(s)	612
Bpu10I	CCTNAGC	1 cut(s)	809
Bpu14I	TTCGAA	1 cut(s)	867
BsaBI	GATNNNNATC	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	823
Bsc4I	CCNNNNNNNGG	2 cut(s)	641, 855
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	4 cut(s)	128, 187, 595, 913
Bse8I	GATNNNNATC	1 cut(s)	141
BseAI	TCCGGA	1 cut(s)	823
BseGI	GGATG	3 cut(s)	192, 488, 688
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	2 cut(s)	641, 855
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	4 cut(s)	128, 187, 595, 913
BseRI	GAGGAG	2 cut(s)	114, 713
BsgI	GTGCAG	1 cut(s)	815
Bsh1236I	CGCG	2 cut(s)	563, 642
BshNI	GGYRCC	1 cut(s)	597
BsiSI	CCGG	2 cut(s)	291, 824
BslFI	GGGAC	2 cut(s)	376, 871
BslI	CCNNNNNNNGG	2 cut(s)	641, 855
BsmAI	GTCTC	1 cut(s)	780
BsmFI	GGGAC	2 cut(s)	376, 871
Bsp119I	TTCGAA	1 cut(s)	867
Bsp13I	TCCGGA	1 cut(s)	823
BspACI	CCGC	2 cut(s)	563, 642
BspCNI	CTCAG	1 cut(s)	397
BspEI	TCCGGA	1 cut(s)	823
BspFNI	CGCG	2 cut(s)	563, 642
BspLI	GGNNCC	3 cut(s)	364, 365, 599
BspPI	GGATC	3 cut(s)	59, 911, 919
BspT104I	TTCGAA	1 cut(s)	867
BspT107I	GGYRCC	1 cut(s)	597
BsrFI	RCCGGY	1 cut(s)	290
BsrI	ACTGG	4 cut(s)	128, 187, 595, 913
BssAI	RCCGGY	1 cut(s)	290
Bst4CI	ACNGT	2 cut(s)	275, 326
Bst6I	CTCTTC	2 cut(s)	4, 221
BstBI	TTCGAA	1 cut(s)	867
BstDEI	CTNAG	5 cut(s)	235, 405, 474, 809, 850
BstF5I	GGATG	3 cut(s)	192, 488, 688
BstFNI	CGCG	2 cut(s)	563, 642
BstMAI	GTCTC	1 cut(s)	780
BstMWI	GCNNNNNNNGC	1 cut(s)	617
BstNSI	RCATGY	2 cut(s)	611, 864
BstUI	CGCG	2 cut(s)	563, 642
BstV2I	GAAGAC	1 cut(s)	383
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
BtsCI	GGATG	3 cut(s)	192, 488, 688
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	2 cut(s)	513, 906
CaiI	CAGNNNCTG	1 cut(s)	168
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	2 cut(s)	149, 363
Csp6I	GTAC	1 cut(s)	598
CviAII	CATG	2 cut(s)	608, 861
CviJI	RGCY	9 cut(s)	165, 267, 290, 341, 439, 575, 813, 876, 898
CviKI_1	RGCY	9 cut(s)	165, 267, 290, 341, 439, 575, 813, 876, 898
CviQI	GTAC	1 cut(s)	598
DdeI	CTNAG	5 cut(s)	235, 405, 474, 809, 850
DraI	TTTAAA	2 cut(s)	582, 921
DrdI	GACNNNNNNGTC	1 cut(s)	385
DseDI	GACNNNNNNGTC	1 cut(s)	385
Eam1104I	CTCTTC	2 cut(s)	4, 221
EarI	CTCTTC	2 cut(s)	4, 221
Eco32I	GATATC	1 cut(s)	559
Eco47I	GGWCC	2 cut(s)	149, 363
Eco57I	CTGAAG	3 cut(s)	321, 512, 914
EcoO109I	RGGNCCY	1 cut(s)	363
EcoRI	GAATTC	1 cut(s)	935
EcoRV	GATATC	1 cut(s)	559
EcoT22I	ATGCAT	1 cut(s)	448
FaeI	CATG	2 cut(s)	611, 864
FalI	AAGNNNNNCTT	2 cut(s)	802, 834
FaqI	GGGAC	2 cut(s)	376, 871
FatI	CATG	2 cut(s)	607, 860
FauI	CCCGC	1 cut(s)	556
FokI	GGATG	3 cut(s)	179, 475, 695
FspBI	CTAG	1 cut(s)	390
GsuI	CTGGAG	1 cut(s)	612
HapII	CCGG	2 cut(s)	291, 824
Hin1II	CATG	2 cut(s)	611, 864
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HindIII	AAGCTT	2 cut(s)	437, 573
HinfI	GANTC	6 cut(s)	12, 239, 254, 332, 628, 773
HpaII	CCGG	2 cut(s)	291, 824
HphI	GGTGA	3 cut(s)	287, 308, 338
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	3 cut(s)	406, 556, 678
Hpy188III	TCNNGA	6 cut(s)	41, 134, 521, 569, 614, 824
Hpy8I	GTNNAC	1 cut(s)	16
Hpy99I	CGWCG	3 cut(s)	224, 275, 326
HpyAV	CCTTC	4 cut(s)	408, 424, 734, 828
HpyCH4III	ACNGT	2 cut(s)	275, 326
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	3 cut(s)	446, 506, 796
HpyF10VI	GCNNNNNNNGC	1 cut(s)	617
HpyF3I	CTNAG	5 cut(s)	235, 405, 474, 809, 850
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	2 cut(s)	611, 864
KflI	GGGWCCC	1 cut(s)	363
Kpn2I	TCCGGA	1 cut(s)	823
KpnI	GGTACC	1 cut(s)	601
LmnI	GCTCC	2 cut(s)	616, 754
LweI	GCATC	3 cut(s)	493, 497, 607
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	2 cut(s)	531, 728
MflI	RGATCY	1 cut(s)	452
MluCI	AATT	3 cut(s)	52, 224, 935
MlyI	GAGTC	4 cut(s)	21, 233, 622, 782
MmeI	TCCRAC	2 cut(s)	267, 478
MnlI	CCTC	8 cut(s)	92, 101, 224, 413, 587, 663, 691, 845
Mph1103I	ATGCAT	1 cut(s)	448
MroI	TCCGGA	1 cut(s)	823
MroXI	GAANNNNTTC	1 cut(s)	188
MseI	TTAA	4 cut(s)	581, 839, 878, 920
MslI	CAYNNNNRTG	1 cut(s)	677
MspI	CCGG	2 cut(s)	291, 824
MvnI	CGCG	2 cut(s)	563, 642
MwoI	GCNNNNNNNGC	1 cut(s)	617
NlaIII	CATG	2 cut(s)	611, 864
NlaIV	GGNNCC	3 cut(s)	364, 365, 599
NmuCI	GTSAC	1 cut(s)	531
NsiI	ATGCAT	1 cut(s)	448
NspI	RCATGY	2 cut(s)	611, 864
NspV	TTCGAA	1 cut(s)	867
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	254, 332
PleI	GAGTC	4 cut(s)	20, 233, 622, 781
PpsI	GAGTC	4 cut(s)	20, 233, 622, 781
PpuMI	RGGWCCY	1 cut(s)	363
Psp1406I	AACGTT	1 cut(s)	246
Psp5II	RGGWCCY	1 cut(s)	363
PspN4I	GGNNCC	3 cut(s)	364, 365, 599
PspPI	GGNCC	2 cut(s)	149, 363
PspPPI	RGGWCCY	1 cut(s)	363
PstNI	CAGNNNCTG	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	452
RsaI	GTAC	1 cut(s)	599
RsaNI	GTAC	1 cut(s)	598
RseI	CAYNNNNRTG	1 cut(s)	677
SaqAI	TTAA	4 cut(s)	581, 839, 878, 920
Sau96I	GGNCC	2 cut(s)	149, 363
SchI	GAGTC	4 cut(s)	21, 233, 622, 782
SfaNI	GCATC	3 cut(s)	493, 497, 607
SfuI	TTCGAA	1 cut(s)	867
SinI	GGWCC	2 cut(s)	149, 363
SmiMI	CAYNNNNRTG	1 cut(s)	677
Sse9I	AATT	3 cut(s)	52, 224, 935
SsiI	CCGC	2 cut(s)	563, 642
SspI	AATATT	1 cut(s)	469
SspMI	CTAG	1 cut(s)	390
TaaI	ACNGT	2 cut(s)	275, 326
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	8 cut(s)	42, 63, 75, 141, 207, 219, 270, 867
TaqII	GACCGA	1 cut(s)	375
TasI	AATT	3 cut(s)	52, 224, 935
TfiI	GAWTC	2 cut(s)	254, 332
Tru1I	TTAA	4 cut(s)	581, 839, 878, 920
Tru9I	TTAA	4 cut(s)	581, 839, 878, 920
TscAI	CASTG	2 cut(s)	513, 913
TseFI	GTSAC	1 cut(s)	531
Tsp45I	GTSAC	1 cut(s)	531
TspDTI	ATGAA	6 cut(s)	73, 163, 181, 321, 443, 928
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	2 cut(s)	513, 913
VpaK11BI	GGWCC	2 cut(s)	149, 363
XapI	RAATTY	1 cut(s)	935
XceI	RCATGY	2 cut(s)	611, 864
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	1 cut(s)	390
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.