Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001460.1

Orthogroup ID

OG0004109

Physical Location & Seq

Genomic Coordinates Forward (+)

58633 .. 60906

Gene Structure 2274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001460.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

atggatgggatgggtgcatctggaaaccacgacctaggaggtcacagcatcattaatgactttgagttacaagacttcatagatgatgcaaacttcgaccagttcatcaatcttattcgcggcgaaaatgaggatccagcagcagctcattttgattgcgaccttatcagtggctcgtgctttgttgataaccagtttaatccaactactccgggtagtggtttctttggtttagatcataatactactgtcggatccgatccagctccttttcttactacattaccaaattttgatggagaaatgaacgatattggggaagaagataatgacgcagactcatgtggaacaacgacaacaaccaccacaaataccacagccacgacgacaaagaagccaaaggttgatcggtccagaaccttggtttctgagaggaagaggaggggaaggatgaaagaaaaactctatgcattgcggtccttggttcctaacatcactaagatggataaagcctccatcgttggagatgctgtatcatatgtacaagatcttcaaaaacacgctaagaagctggaagctgagatttcaggtcttgaagcatccatagaaggatcaggggtaaagcaagcagtatcaacccaaaatccaaccaagaataaattagttgcagacaagtaccatttaactcccacggaaatcattcagatagatgtatcccaagtagaggagaaaagcttttatgtgaaagtgggatgcaacaaaggagtaggcgtggccacagcgctttacaaggctatcgaatcccttacaagcttcaatgttctgagttcaaacttgaacacggttaattctgggagattcgaaataacactcagtttgaatgtgaaagaaagcgagcaggagatcatcaacttaccaaacctgaaactttgggagagcaccaacctcgtcacaaggttcttttctctgcctttcggaaaaggacttctttccttacgggtaagggctttggttgtgatctcttcgcgtcaccgaatagatactcaacattgtaggttgagcagaacaatcactgggaagtttggagaaagcatgggtttaataaagcgtatctttagcttagctgggttgcgagggcattacccttacttcgctgggttgcgagggcgttacccttactgcgctagtttgcaactgggttgcaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

402

Amino Acids

44.17

Weight (kDa)

6.52

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28160 AT2G28160
fragaria_vesca	FvH4_3g30650 FvH4_3g30660 FvH4_3g30660
malus_domestica	MD03G1127500.v1.1 MD03G1127600.v1.1 MD03G1129100.v1.1
prunus_persica	Prupe.6G112500_v2.0.a1 Prupe.6G112600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056871 RchiOBHm_Chr5g0056881
rosa_laevigata	RLG00000035133 RLG00000035134
rosa_multiflora	Rmu_sc0001460.1_g000011 Rmu_sc0001460.1_g000020
rosa_roxburghii	Rroxscaffold_1G00023420 Rroxscaffold_1G00023430
rosa_rugosa	Rorug05G0302900 Rorug05G0303000 Rorug05G0303200 Rorug05G0303300
rosa_samantha	Rh5AG373100 Rh5AG373300 Rh5BG384200 Rh5BG384300 Rh5CG407300 Rh5CG407500 Rh5DG397300 Rh5DG397600
rosa_wichuraiana	Rw5G034980 Rw5G035090 Rw5G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1194
AccII	CGCG	2 cut(s)	120, 1027
AciI	CCGC	2 cut(s)	120, 475
AclWI	GGATC	6 cut(s)	128, 141, 249, 254, 262, 619
AcoI	YGGCCR	1 cut(s)	774
AcsI	RAATTY	1 cut(s)	289
AfaI	GTAC	2 cut(s)	543, 677
AfeI	AGCGCT	1 cut(s)	783
AfiI	CCNNNNNNNGG	2 cut(s)	218, 724
AgsI	TTSAA	6 cut(s)	554, 596, 817, 831, 838, 880
AluBI	AGCT	8 cut(s)	146, 266, 571, 578, 735, 813, 1119, 1124
AluI	AGCT	8 cut(s)	146, 266, 571, 578, 735, 813, 1119, 1124
Alw21I	GWGCWC	1 cut(s)	941
AlwI	GGATC	6 cut(s)	128, 141, 249, 254, 262, 619
Aor51HI	AGCGCT	1 cut(s)	783
AoxI	GGCC	1 cut(s)	774
ApeKI	GCWGC	2 cut(s)	140, 143
ApoI	RAATTY	1 cut(s)	289
AseI	ATTAAT	1 cut(s)	54
Asp700I	GAANNNNTTC	1 cut(s)	699
AspA2I	CCTAGG	1 cut(s)	34
AspLEI	GCGC	2 cut(s)	784, 1184
AspS9I	GGNCC	2 cut(s)	411, 477
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	1022
AsuII	TTCGAA	1 cut(s)	861
AvaII	GGWCC	2 cut(s)	411, 477
AvrII	CCTAGG	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	776
BamHI	GGATCC	2 cut(s)	133, 254
BarI	GAAGNNNNNNTAC	2 cut(s)	534, 566
BauI	CACGAG	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	941
BbvI	GCAGC	2 cut(s)	152, 155
BccI	CCATC	4 cut(s)	4, 290, 496, 524
BcgI	CGANNNNNNTGC	2 cut(s)	928, 962
BciVI	GTATCC	1 cut(s)	724
BcnI	CCSGG	1 cut(s)	213
BfaI	CTAG	2 cut(s)	35, 1185
BfoI	RGCGCY	1 cut(s)	785
BfuAI	ACCTGC	1 cut(s)	1194
BfuI	GTATCC	1 cut(s)	724
BglII	AGATCT	1 cut(s)	547
BisI	GCNGC	3 cut(s)	121, 141, 144
BlnI	CCTAGG	1 cut(s)	34
BlpI	GCTNAGC	1 cut(s)	1120
BlsI	GCNGC	3 cut(s)	122, 142, 145
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	2 cut(s)	411, 477
BmgT120I	GGNCC	2 cut(s)	411, 477
BmiI	GGNNCC	3 cut(s)	135, 256, 486
BmrFI	CCNGG	1 cut(s)	213
BmrI	ACTGGG	2 cut(s)	1083, 1205
BmsI	GCATC	6 cut(s)	26, 57, 76, 517, 608, 743
BmuI	ACTGGG	2 cut(s)	1083, 1205
Bpu1102I	GCTNAGC	1 cut(s)	1120
Bpu14I	TTCGAA	1 cut(s)	861
BpuMI	CCSGG	1 cut(s)	213
BsaJI	CCNNGG	4 cut(s)	34, 420, 480, 690
BsaXI	ACNNNNNCTCC	4 cut(s)	516, 546, 756, 786
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 724
Bse1I	ACTGG	4 cut(s)	100, 193, 1078, 1200
Bse3DI	GCAATG	1 cut(s)	470
BseDI	CCNNGG	4 cut(s)	34, 420, 480, 690
BseGI	GGATG	5 cut(s)	10, 15, 456, 599, 758
BseLI	CCNNNNNNNGG	2 cut(s)	218, 724
BseMI	GCAATG	1 cut(s)	470
BseMII	CTCAG	4 cut(s)	420, 570, 815, 886
BseNI	ACTGG	4 cut(s)	100, 193, 1078, 1200
BseRI	GAGGAG	2 cut(s)	454, 740
BseXI	GCAGC	2 cut(s)	152, 155
BseYI	CCCAGC	2 cut(s)	1124, 1154
Bsh1236I	CGCG	2 cut(s)	120, 1027
BshFI	GGCC	1 cut(s)	776
BsiHKAI	GWGCWC	1 cut(s)	941
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	218, 724
BsnI	GGCC	1 cut(s)	776
Bsp119I	TTCGAA	1 cut(s)	861
Bsp1286I	GDGCHC	1 cut(s)	941
Bsp1407I	TGTACA	1 cut(s)	541
Bsp143I	GATC	9 cut(s)	133, 235, 254, 259, 406, 547, 611, 903, 1017
Bsp1720I	GCTNAGC	1 cut(s)	1120
BspACI	CCGC	2 cut(s)	120, 475
BspANI	GGCC	1 cut(s)	776
BspCNI	CTCAG	4 cut(s)	421, 571, 816, 885
BspFNI	CGCG	2 cut(s)	120, 1027
BspLI	GGNNCC	3 cut(s)	135, 256, 486
BspMI	ACCTGC	1 cut(s)	1194
BspPI	GGATC	6 cut(s)	128, 141, 249, 254, 262, 619
BspT104I	TTCGAA	1 cut(s)	861
BsrDI	GCAATG	1 cut(s)	470
BsrGI	TGTACA	1 cut(s)	541
BsrI	ACTGG	4 cut(s)	100, 193, 1078, 1200
BssECI	CCNNGG	4 cut(s)	34, 420, 480, 690
BssMI	GATC	9 cut(s)	133, 235, 254, 259, 406, 547, 611, 903, 1017
BssSI	CACGAG	1 cut(s)	175
BssT1I	CCWWGG	3 cut(s)	34, 420, 480
Bst2BI	CACGAG	1 cut(s)	175
Bst4CI	ACNGT	2 cut(s)	250, 844
Bst6I	CTCTTC	2 cut(s)	431, 1027
BstAUI	TGTACA	1 cut(s)	541
BstBI	TTCGAA	1 cut(s)	861
BstC8I	GCNNGC	2 cut(s)	627, 896
BstDEI	CTNAG	7 cut(s)	429, 498, 564, 579, 824, 872, 1120
BstDSI	CCRYGG	1 cut(s)	690
BstF5I	GGATG	5 cut(s)	10, 15, 456, 599, 758
BstFNI	CGCG	2 cut(s)	120, 1027
BstH2I	RGCGCY	1 cut(s)	785
BstHHI	GCGC	2 cut(s)	784, 1184
BstKTI	GATC	9 cut(s)	136, 238, 257, 262, 409, 550, 614, 906, 1020
BstMBI	GATC	9 cut(s)	133, 235, 254, 259, 406, 547, 611, 903, 1017
BstSCI	CCNGG	1 cut(s)	211
BstUI	CGCG	2 cut(s)	120, 1027
BstV1I	GCAGC	2 cut(s)	152, 155
BstX2I	RGATCY	3 cut(s)	133, 254, 547
BstXI	CCANNNNNNTGG	1 cut(s)	421
BstYI	RGATCY	3 cut(s)	133, 254, 547
BsuI	GTATCC	1 cut(s)	724
BsuRI	GGCC	1 cut(s)	776
BtgI	CCRYGG	1 cut(s)	690
BtsCI	GGATG	5 cut(s)	10, 15, 456, 599, 758
BtsIMutI	CAGTG	2 cut(s)	175, 1071
BveI	ACCTGC	1 cut(s)	1194
Cac8I	GCNNGC	2 cut(s)	627, 896
CfoI	GCGC	2 cut(s)	784, 1184
Cfr13I	GGNCC	2 cut(s)	411, 477
CseI	GACGC	2 cut(s)	341, 1016
Csp6I	GTAC	2 cut(s)	542, 676
CviAII	CATG	2 cut(s)	342, 1093
CviQI	GTAC	2 cut(s)	542, 676
DdeI	CTNAG	7 cut(s)	429, 498, 564, 579, 824, 872, 1120
DpnI	GATC	9 cut(s)	135, 237, 256, 261, 408, 549, 613, 905, 1019
DpnII	GATC	9 cut(s)	133, 235, 254, 259, 406, 547, 611, 903, 1017
EaeI	YGGCCR	1 cut(s)	774
Eam1104I	CTCTTC	2 cut(s)	431, 1027
EarI	CTCTTC	2 cut(s)	431, 1027
Eco130I	CCWWGG	3 cut(s)	34, 420, 480
Eco47I	GGWCC	2 cut(s)	411, 477
Eco47III	AGCGCT	1 cut(s)	783
EcoT14I	CCWWGG	3 cut(s)	34, 420, 480
EcoT22I	ATGCAT	1 cut(s)	472
ErhI	CCWWGG	3 cut(s)	34, 420, 480
FaeI	CATG	2 cut(s)	345, 1096
FaiI	YATR	9 cut(s)	80, 240, 343, 468, 538, 540, 605, 741, 1094
FalI	AAGNNNNNCTT	4 cut(s)	972, 1004, 1097, 1129
FatI	CATG	2 cut(s)	341, 1092
FauNDI	CATATG	1 cut(s)	538
Fnu4HI	GCNGC	3 cut(s)	121, 141, 144
FokI	GGATG	5 cut(s)	17, 22, 463, 586, 765
Fsp4HI	GCNGC	3 cut(s)	121, 141, 144
FspBI	CTAG	2 cut(s)	35, 1185
GlaI	GCGC	2 cut(s)	783, 1183
GluI	GCNGC	3 cut(s)	121, 141, 144
GsaI	CCCAGC	2 cut(s)	1128, 1158
HaeII	RGCGCY	1 cut(s)	785
HaeIII	GGCC	1 cut(s)	776
HapII	CCGG	1 cut(s)	212
HgaI	GACGC	2 cut(s)	341, 1016
HhaI	GCGC	2 cut(s)	784, 1184
Hin1II	CATG	2 cut(s)	345, 1096
Hin6I	GCGC	2 cut(s)	782, 1182
HinP1I	GCGC	2 cut(s)	782, 1182
HindIII	AAGCTT	2 cut(s)	733, 811
HinfI	GANTC	3 cut(s)	338, 800, 858
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	1 cut(s)	1022
Hpy188I	TCNGA	6 cut(s)	254, 259, 430, 705, 825, 977
Hpy188III	TCNNGA	3 cut(s)	21, 414, 593
Hpy99I	CGWCG	1 cut(s)	388
HpyAV	CCTTC	2 cut(s)	441, 602
HpyCH4III	ACNGT	2 cut(s)	250, 844
HpyCH4V	TGCA	7 cut(s)	17, 89, 470, 668, 756, 1192, 1203
HpyF3I	CTNAG	7 cut(s)	429, 498, 564, 579, 824, 872, 1120
Hsp92II	CATG	2 cut(s)	345, 1096
HspAI	GCGC	2 cut(s)	782, 1182
Kzo9I	GATC	9 cut(s)	133, 235, 254, 259, 406, 547, 611, 903, 1017
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	2 cut(s)	152, 155
LweI	GCATC	6 cut(s)	26, 57, 76, 517, 608, 743
MaeI	CTAG	2 cut(s)	35, 1185
MaeIII	GTNAC	5 cut(s)	41, 66, 949, 1028, 1169
MalI	GATC	9 cut(s)	135, 237, 256, 261, 408, 549, 613, 905, 1019
MboI	GATC	9 cut(s)	133, 235, 254, 259, 406, 547, 611, 903, 1017
MboII	GAAGA	5 cut(s)	332, 335, 448, 542, 1014
MflI	RGATCY	3 cut(s)	133, 254, 547
MhlI	GDGCHC	1 cut(s)	941
MlsI	TGGCCA	1 cut(s)	776
MluCI	AATT	3 cut(s)	289, 659, 847
MluNI	TGGCCA	1 cut(s)	776
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	4 cut(s)	227, 232, 502, 671
Mox20I	TGGCCA	1 cut(s)	776
Mph1103I	ATGCAT	1 cut(s)	472
MroXI	GAANNNNTTC	1 cut(s)	699
MscI	TGGCCA	1 cut(s)	776
MseI	TTAA	5 cut(s)	54, 198, 683, 846, 1100
MslI	CAYNNNNRTG	1 cut(s)	500
Msp20I	TGGCCA	1 cut(s)	776
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	213
MvnI	CGCG	2 cut(s)	120, 1027
NciI	CCSGG	1 cut(s)	213
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	9 cut(s)	133, 235, 254, 259, 406, 547, 611, 903, 1017
NlaIII	CATG	2 cut(s)	345, 1096
NlaIV	GGNNCC	3 cut(s)	135, 256, 486
NmuCI	GTSAC	3 cut(s)	41, 949, 1028
NsiI	ATGCAT	1 cut(s)	472
NspV	TTCGAA	1 cut(s)	861
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	2 cut(s)	800, 858
PkrI	GCNGC	3 cut(s)	122, 142, 145
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
PshBI	ATTAAT	1 cut(s)	54
PspFI	CCCAGC	2 cut(s)	1124, 1154
PspN4I	GGNNCC	3 cut(s)	135, 256, 486
PspPI	GGNCC	2 cut(s)	411, 477
PsuI	RGATCY	3 cut(s)	133, 254, 547
RsaI	GTAC	2 cut(s)	543, 677
RsaNI	GTAC	2 cut(s)	542, 676
RseI	CAYNNNNRTG	1 cut(s)	500
SaqAI	TTAA	5 cut(s)	54, 198, 683, 846, 1100
SatI	GCNGC	3 cut(s)	121, 141, 144
Sau3AI	GATC	9 cut(s)	133, 235, 254, 259, 406, 547, 611, 903, 1017
Sau96I	GGNCC	2 cut(s)	411, 477
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	941
SfaNI	GCATC	6 cut(s)	26, 57, 76, 517, 608, 743
SfuI	TTCGAA	1 cut(s)	861
SinI	GGWCC	2 cut(s)	411, 477
SmiMI	CAYNNNNRTG	1 cut(s)	500
Sse9I	AATT	3 cut(s)	289, 659, 847
SsiI	CCGC	2 cut(s)	120, 475
SspMI	CTAG	2 cut(s)	35, 1185
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	3 cut(s)	34, 420, 480
TaaI	ACNGT	2 cut(s)	250, 844
TaqI	TCGA	3 cut(s)	96, 798, 861
TaqII	GACCGA	1 cut(s)	399
TasI	AATT	3 cut(s)	289, 659, 847
TatI	WGTACW	1 cut(s)	541
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	2 cut(s)	800, 858
Tru1I	TTAA	5 cut(s)	54, 198, 683, 846, 1100
Tru9I	TTAA	5 cut(s)	54, 198, 683, 846, 1100
TscAI	CASTG	2 cut(s)	175, 1078
TseFI	GTSAC	3 cut(s)	41, 949, 1028
TseI	GCWGC	2 cut(s)	140, 143
Tsp45I	GTSAC	3 cut(s)	41, 949, 1028
TspDTI	ATGAA	4 cut(s)	67, 94, 320, 467
TspGWI	ACGGA	1 cut(s)	707
TspRI	CASTG	2 cut(s)	175, 1078
VpaK11BI	GGWCC	2 cut(s)	411, 477
VspI	ATTAAT	1 cut(s)	54
XapI	RAATTY	1 cut(s)	289
XmaJI	CCTAGG	1 cut(s)	34
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	2 cut(s)	35, 1185
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.