Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004109

Physical Location & Seq

Genomic Coordinates Reverse (-)

24017520 .. 24019596

Gene Structure 2077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g30660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGATGGGATAGGCGCATCTGGAAACCACGATCTAGGAGGTCACAGCATCATTAACGACTTTGAGTTACAAGACTTCATAGACGATGCAAACTTCGACCAGTTCATCGATCTTATTCGCGGCGAAAATGAGGATCCAGCAGCAGCTCATTTTGATTGCGACCTTCTCAGTGGCTCGTGCTTTGTTGATAACCAGTGCGTTCAAATTACTCCGGATAGCGGTTTCTTTGGTTTTGGTCATAATACTACTGGCATATCCGATGCGGCTCCTTTTCTTACTACATTACCACATTTCGATGGAGAAATGAACAATATTGGTAGAGAAGAAGAAAATGACGCAGACTCGTGTGGAACAACGACAACAACCACCACAAATACCACAGGCACGACAACAAAGAAGCCAAAAGTTGATCGGTCGAGAACCTTGGTTTCGGAGAGGAAGAGAAGAGGAAGGATGAAAGAAAAGCTCTATGCATTGCGGTCCTTAGTTCCTAATATCACTAAGATGGATAAGGCATCCATTGTTGGAGATGCAGTAGCGTATGTACAAGATCTCCAAAAACACGCTAAGAAGCTAGAAGTTGAGATTACAGGCCTTGAAGAGTCCATAGAAGGATCCGGGGGAAAGCAAGTACGGTCGTCAATGCAAAATTCAACCAAGAATAAATTTGTTGCAGATAATTATCATTTAACTCCCAAGGGAATCATTCAGATAGATGTGTCCCAAGTAGAGGAGAAAGGCTTTTACGTGAAAGTGGGATGCAACAAAGGAGTAGGCGTGGCCACATCACTTTACAAGGCTATTGAATCCCTTACGAGCTTCAATGTTCTGAGTTCCAACTTGAACACGATTAATTCTGGGAGATTCGAAATAACACTCATTCTAGATGTAAAAGAAAGCCAGCAGGAGATCATCAACTTACCAAACTTGAAACTTTGGGTGACTGGAGCTTTTTTGAACCAAGGTTTTGAACTAGCTACATGCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

330

Amino Acids

35.97

Weight (kDa)

5.03

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	142 - 186	5e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28160 AT2G28160
fragaria_vesca	FvH4_3g30650 FvH4_3g30660 FvH4_3g30660
malus_domestica	MD03G1127500.v1.1 MD03G1127600.v1.1 MD03G1129100.v1.1
prunus_persica	Prupe.6G112500_v2.0.a1 Prupe.6G112600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056871 RchiOBHm_Chr5g0056881
rosa_laevigata	RLG00000035133 RLG00000035134
rosa_multiflora	Rmu_sc0001460.1_g000011 Rmu_sc0001460.1_g000020
rosa_roxburghii	Rroxscaffold_1G00023420 Rroxscaffold_1G00023430
rosa_rugosa	Rorug05G0302900 Rorug05G0303000 Rorug05G0303200 Rorug05G0303300
rosa_samantha	Rh5AG373100 Rh5AG373300 Rh5BG384200 Rh5BG384300 Rh5CG407300 Rh5CG407500 Rh5DG397300 Rh5DG397600
rosa_wichuraiana	Rw5G034980 Rw5G035090 Rw5G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	120
AccIII	TCCGGA	1 cut(s)	211
AciI	CCGC	4 cut(s)	120, 219, 263, 478
AclWI	GGATC	4 cut(s)	128, 141, 609, 622
AcoI	YGGCCR	1 cut(s)	780
AcsI	RAATTY	2 cut(s)	649, 665
AfaI	GTAC	2 cut(s)	546, 633
AfiI	CCNNNNNNNGG	2 cut(s)	218, 730
AgsI	TTSAA	9 cut(s)	203, 599, 654, 806, 823, 844, 931, 958, 971
AluBI	AGCT	6 cut(s)	146, 466, 574, 819, 950, 977
AluI	AGCT	6 cut(s)	146, 466, 574, 819, 950, 977
AlwI	GGATC	4 cut(s)	128, 141, 609, 622
Aor13HI	TCCGGA	1 cut(s)	211
AoxI	GGCC	2 cut(s)	592, 780
ApeKI	GCWGC	2 cut(s)	140, 143
ApoI	RAATTY	2 cut(s)	649, 665
AseI	ATTAAT	1 cut(s)	852
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	480
AsuC2I	CCSGG	1 cut(s)	619
AsuHPI	GGTGA	1 cut(s)	952
AsuII	TTCGAA	1 cut(s)	867
AvaII	GGWCC	1 cut(s)	480
BalI	TGGCCA	1 cut(s)	782
BamHI	GGATCC	2 cut(s)	133, 614
BauI	CACGAG	2 cut(s)	175, 343
BbvI	GCAGC	2 cut(s)	152, 155
BccI	CCATC	2 cut(s)	290, 499
BcnI	CCSGG	1 cut(s)	619
BfaI	CTAG	4 cut(s)	35, 575, 884, 974
BglII	AGATCT	1 cut(s)	550
BisI	GCNGC	4 cut(s)	121, 141, 144, 264
BlsI	GCNGC	4 cut(s)	122, 142, 145, 265
Bme1390I	CCNGG	1 cut(s)	619
Bme18I	GGWCC	1 cut(s)	480
BmgT120I	GGNCC	1 cut(s)	480
BmiI	GGNNCC	3 cut(s)	135, 267, 616
BmrFI	CCNGG	1 cut(s)	619
BmsI	GCATC	7 cut(s)	26, 57, 76, 250, 520, 524, 749
BpmI	CTGGAG	1 cut(s)	966
Bpu14I	TTCGAA	1 cut(s)	867
BpuMI	CCSGG	1 cut(s)	619
Bsa29I	ATCGAT	1 cut(s)	108
BsaAI	YACGTR	1 cut(s)	748
BsaBI	GATNNNNATC	1 cut(s)	681
BsaJI	CCNNGG	4 cut(s)	423, 618, 696, 961
BsaWI	WCCGGW	1 cut(s)	211
BsaXI	ACNNNNNCTCC	6 cut(s)	519, 537, 549, 567, 762, 792
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 730
Bse1I	ACTGG	4 cut(s)	100, 193, 253, 949
Bse3DI	GCAATG	1 cut(s)	473
Bse8I	GATNNNNATC	1 cut(s)	681
BseAI	TCCGGA	1 cut(s)	211
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	4 cut(s)	423, 618, 696, 961
BseGI	GGATG	4 cut(s)	10, 459, 515, 764
BseJI	GATNNNNATC	1 cut(s)	681
BseLI	CCNNNNNNNGG	2 cut(s)	218, 730
BseMI	GCAATG	1 cut(s)	473
BseMII	CTCAG	2 cut(s)	181, 821
BseNI	ACTGG	4 cut(s)	100, 193, 253, 949
BseRI	GAGGAG	1 cut(s)	746
BseXI	GCAGC	2 cut(s)	152, 155
Bsh1236I	CGCG	1 cut(s)	120
Bsh1285I	CGRYCG	2 cut(s)	416, 638
BshFI	GGCC	2 cut(s)	594, 782
BshVI	ATCGAT	1 cut(s)	108
BsiEI	CGRYCG	2 cut(s)	416, 638
BsiSI	CCGG	2 cut(s)	212, 618
BslFI	GGGAC	1 cut(s)	706
BslI	CCNNNNNNNGG	2 cut(s)	218, 730
BsmFI	GGGAC	1 cut(s)	706
BsnI	GGCC	2 cut(s)	594, 782
Bsp119I	TTCGAA	1 cut(s)	867
Bsp13I	TCCGGA	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	544
Bsp143I	GATC	7 cut(s)	31, 109, 133, 409, 550, 614, 909
BspACI	CCGC	4 cut(s)	120, 219, 263, 478
BspANI	GGCC	2 cut(s)	594, 782
BspCNI	CTCAG	2 cut(s)	180, 822
BspDI	ATCGAT	1 cut(s)	108
BspEI	TCCGGA	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	3 cut(s)	135, 267, 616
BspPI	GGATC	4 cut(s)	128, 141, 609, 622
BspT104I	TTCGAA	1 cut(s)	867
BsrDI	GCAATG	1 cut(s)	473
BsrGI	TGTACA	1 cut(s)	544
BsrI	ACTGG	4 cut(s)	100, 193, 253, 949
BssECI	CCNNGG	4 cut(s)	423, 618, 696, 961
BssMI	GATC	7 cut(s)	31, 109, 133, 409, 550, 614, 909
BssSI	CACGAG	2 cut(s)	175, 343
BssT1I	CCWWGG	3 cut(s)	423, 696, 961
Bst2BI	CACGAG	2 cut(s)	175, 343
Bst4CI	ACNGT	1 cut(s)	636
Bst6I	CTCTTC	3 cut(s)	434, 439, 594
BstAUI	TGTACA	1 cut(s)	544
BstBAI	YACGTR	1 cut(s)	748
BstBI	TTCGAA	1 cut(s)	867
BstC8I	GCNNGC	1 cut(s)	902
BstDEI	CTNAG	5 cut(s)	167, 484, 501, 567, 830
BstF5I	GGATG	4 cut(s)	10, 459, 515, 764
BstFNI	CGCG	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	7 cut(s)	34, 112, 136, 412, 553, 617, 912
BstMBI	GATC	7 cut(s)	31, 109, 133, 409, 550, 614, 909
BstMCI	CGRYCG	2 cut(s)	416, 638
BstNSI	RCATGY	1 cut(s)	984
BstSCI	CCNGG	1 cut(s)	617
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	152, 155
BstX2I	RGATCY	3 cut(s)	133, 550, 614
BstYI	RGATCY	3 cut(s)	133, 550, 614
Bsu15I	ATCGAT	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	594, 782
BsuTUI	ATCGAT	1 cut(s)	108
BtsCI	GGATG	4 cut(s)	10, 459, 515, 764
BtsIMutI	CAGTG	2 cut(s)	175, 200
Cac8I	GCNNGC	1 cut(s)	902
CfoI	GCGC	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	480
ClaI	ATCGAT	1 cut(s)	108
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	2 cut(s)	545, 632
CviAII	CATG	1 cut(s)	981
CviQI	GTAC	2 cut(s)	545, 632
DdeI	CTNAG	5 cut(s)	167, 484, 501, 567, 830
DpnI	GATC	7 cut(s)	33, 111, 135, 411, 552, 616, 911
DpnII	GATC	7 cut(s)	31, 109, 133, 409, 550, 614, 909
EaeI	YGGCCR	1 cut(s)	780
Eam1104I	CTCTTC	3 cut(s)	434, 439, 594
EarI	CTCTTC	3 cut(s)	434, 439, 594
Eco130I	CCWWGG	3 cut(s)	423, 696, 961
Eco147I	AGGCCT	1 cut(s)	594
Eco47I	GGWCC	1 cut(s)	480
EcoT14I	CCWWGG	3 cut(s)	423, 696, 961
EcoT22I	ATGCAT	1 cut(s)	475
ErhI	CCWWGG	3 cut(s)	423, 696, 961
FaeI	CATG	1 cut(s)	984
FaiI	YATR	7 cut(s)	80, 240, 254, 471, 543, 608, 982
FaqI	GGGAC	1 cut(s)	706
FatI	CATG	1 cut(s)	980
Fnu4HI	GCNGC	4 cut(s)	121, 141, 144, 264
FokI	GGATG	4 cut(s)	17, 466, 502, 771
Fsp4HI	GCNGC	4 cut(s)	121, 141, 144, 264
FspBI	CTAG	4 cut(s)	35, 575, 884, 974
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	4 cut(s)	121, 141, 144, 264
GsuI	CTGGAG	1 cut(s)	966
HaeIII	GGCC	2 cut(s)	594, 782
HapII	CCGG	2 cut(s)	212, 618
HgaI	GACGC	1 cut(s)	344
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	984
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HinfI	GANTC	5 cut(s)	341, 602, 702, 806, 864
HpaII	CCGG	2 cut(s)	212, 618
HphI	GGTGA	1 cut(s)	952
Hpy188I	TCNGA	4 cut(s)	259, 433, 711, 831
Hpy188III	TCNNGA	4 cut(s)	21, 212, 417, 884
HpyAV	CCTTC	3 cut(s)	173, 444, 605
HpyCH4III	ACNGT	1 cut(s)	636
HpyCH4IV	ACGT	1 cut(s)	747
HpyCH4V	TGCA	6 cut(s)	89, 473, 533, 646, 674, 762
HpyF3I	CTNAG	5 cut(s)	167, 484, 501, 567, 830
HpySE526I	ACGT	1 cut(s)	747
Hsp92II	CATG	1 cut(s)	984
HspAI	GCGC	1 cut(s)	15
Kpn2I	TCCGGA	1 cut(s)	211
Kzo9I	GATC	7 cut(s)	31, 109, 133, 409, 550, 614, 909
LmnI	GCTCC	2 cut(s)	271, 947
Lsp1109I	GCAGC	2 cut(s)	152, 155
LweI	GCATC	7 cut(s)	26, 57, 76, 250, 520, 524, 749
MaeI	CTAG	4 cut(s)	35, 575, 884, 974
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	3 cut(s)	41, 66, 940
MalI	GATC	7 cut(s)	33, 111, 135, 411, 552, 616, 911
MboI	GATC	7 cut(s)	31, 109, 133, 409, 550, 614, 909
MboII	GAAGA	5 cut(s)	335, 338, 451, 456, 611
MflI	RGATCY	3 cut(s)	133, 550, 614
MlsI	TGGCCA	1 cut(s)	782
MluCI	AATT	5 cut(s)	204, 649, 665, 679, 853
MluNI	TGGCCA	1 cut(s)	782
MlyI	GAGTC	2 cut(s)	335, 611
MmeI	TCCRAC	2 cut(s)	505, 861
MnlI	CCTC	5 cut(s)	32, 124, 429, 440, 724
Mox20I	TGGCCA	1 cut(s)	782
Mph1103I	ATGCAT	1 cut(s)	475
MroI	TCCGGA	1 cut(s)	211
MscI	TGGCCA	1 cut(s)	782
MseI	TTAA	3 cut(s)	54, 689, 852
MslI	CAYNNNNRTG	2 cut(s)	294, 503
Msp20I	TGGCCA	1 cut(s)	782
MspI	CCGG	2 cut(s)	212, 618
MspR9I	CCNGG	1 cut(s)	619
MvnI	CGCG	1 cut(s)	120
NciI	CCSGG	1 cut(s)	619
NdeII	GATC	7 cut(s)	31, 109, 133, 409, 550, 614, 909
NlaIII	CATG	1 cut(s)	984
NlaIV	GGNNCC	3 cut(s)	135, 267, 616
NmuCI	GTSAC	2 cut(s)	41, 940
NsiI	ATGCAT	1 cut(s)	475
NspI	RCATGY	1 cut(s)	984
NspV	TTCGAA	1 cut(s)	867
PceI	AGGCCT	1 cut(s)	594
PfeI	GAWTC	3 cut(s)	702, 806, 864
PkrI	GCNGC	4 cut(s)	122, 142, 145, 265
PleI	GAGTC	2 cut(s)	335, 610
PpsI	GAGTC	2 cut(s)	335, 610
Ppu21I	YACGTR	1 cut(s)	748
PshBI	ATTAAT	1 cut(s)	852
PspN4I	GGNNCC	3 cut(s)	135, 267, 616
PspPI	GGNCC	1 cut(s)	480
PsuI	RGATCY	3 cut(s)	133, 550, 614
RsaI	GTAC	2 cut(s)	546, 633
RsaNI	GTAC	2 cut(s)	545, 632
RseI	CAYNNNNRTG	2 cut(s)	294, 503
SaqAI	TTAA	3 cut(s)	54, 689, 852
SatI	GCNGC	4 cut(s)	121, 141, 144, 264
Sau3AI	GATC	7 cut(s)	31, 109, 133, 409, 550, 614, 909
Sau96I	GGNCC	1 cut(s)	480
SchI	GAGTC	2 cut(s)	335, 611
ScrFI	CCNGG	1 cut(s)	619
SfaNI	GCATC	7 cut(s)	26, 57, 76, 250, 520, 524, 749
SfuI	TTCGAA	1 cut(s)	867
SinI	GGWCC	1 cut(s)	480
SmiMI	CAYNNNNRTG	2 cut(s)	294, 503
Sse9I	AATT	5 cut(s)	204, 649, 665, 679, 853
SseBI	AGGCCT	1 cut(s)	594
SsiI	CCGC	4 cut(s)	120, 219, 263, 478
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	4 cut(s)	35, 575, 884, 974
StuI	AGGCCT	1 cut(s)	594
StyD4I	CCNGG	1 cut(s)	617
StyI	CCWWGG	3 cut(s)	423, 696, 961
TaaI	ACNGT	1 cut(s)	636
TaiI	ACGT	1 cut(s)	750
TaqI	TCGA	5 cut(s)	96, 108, 294, 416, 867
TaqII	GACCGA	1 cut(s)	402
TasI	AATT	5 cut(s)	204, 649, 665, 679, 853
TatI	WGTACW	1 cut(s)	544
TauI	GCSGC	2 cut(s)	123, 266
TfiI	GAWTC	3 cut(s)	702, 806, 864
Tru1I	TTAA	3 cut(s)	54, 689, 852
Tru9I	TTAA	3 cut(s)	54, 689, 852
TscAI	CASTG	2 cut(s)	175, 200
TseFI	GTSAC	2 cut(s)	41, 940
TseI	GCWGC	2 cut(s)	140, 143
Tsp45I	GTSAC	2 cut(s)	41, 940
TspDTI	ATGAA	4 cut(s)	67, 94, 320, 470
TspRI	CASTG	2 cut(s)	175, 200
VpaK11BI	GGWCC	1 cut(s)	480
VspI	ATTAAT	1 cut(s)	852
XapI	RAATTY	2 cut(s)	649, 665
XbaI	TCTAGA	1 cut(s)	883
XceI	RCATGY	1 cut(s)	984
XspI	CTAG	4 cut(s)	35, 575, 884, 974
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.