Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004109

Physical Location & Seq

Genomic Coordinates Forward (+)

35298058 .. 35298736

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0302900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCAAACCCTAAATCCCAACAACCACGAAGAAGAGTACTTCCTTTCCGCGACTCACTGCGATTACGACTTCGCTTACCAGATCTGTGTTGCTGACGACGACCGCGATCTTGATCTTGACCTAATTCCCACCAAGAAACGAAAATCGCGACACGACGACGACTGGAAGGTCTCGATCGTCTGGAACGTGATCAGAAGCTTTTACTGTTCCGACGACCGCACGCGGCAGATCGTGGACGTCGATTTCAAAACGGCGACGTTTCGCGATATGGAATTTTGGTTGTTTACGGAAACTGACGAGAATGGGGTTGGAGTCATCGACCGGATGTTGACTGTAATTGGGCGTATCGTTGAGGACGGCGTGCCGTTTGACGACGTCGAGGAGATGATTGCGCAAATACGGCGCGTCGTTTGTTCGGCTGTGAGGTCGGGAAGGCGGAAGGAGAATCTGGATATAGTGGTCACGGTTCGAAACCAGTCTGGGTTGCCGCGGAGAGAATATGAAGCAATGAACTCTTGTCATAAAATCTCAATCAACACACGTTTCCAATGTTGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

186

Amino Acids

21.8

Weight (kDa)

4.95

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28160 AT2G28160
fragaria_vesca	FvH4_3g30650 FvH4_3g30660 FvH4_3g30660
malus_domestica	MD03G1127500.v1.1 MD03G1127600.v1.1 MD03G1129100.v1.1
prunus_persica	Prupe.6G112500_v2.0.a1 Prupe.6G112600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056871 RchiOBHm_Chr5g0056881
rosa_laevigata	RLG00000035133 RLG00000035134
rosa_multiflora	Rmu_sc0001460.1_g000011 Rmu_sc0001460.1_g000020
rosa_roxburghii	Rroxscaffold_1G00023420 Rroxscaffold_1G00023430
rosa_rugosa	Rorug05G0302900 Rorug05G0303000 Rorug05G0303200 Rorug05G0303300
rosa_samantha	Rh5AG373100 Rh5AG373300 Rh5BG384200 Rh5BG384300 Rh5CG407300 Rh5CG407500 Rh5DG397300 Rh5DG397600
rosa_wichuraiana	Rw5G034980 Rw5G035090 Rw5G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
AatII	GACGTC	2 cut(s)	240, 378
Acc16I	TGCGCA	1 cut(s)	393
AccII	CGCG	7 cut(s)	50, 105, 148, 223, 264, 405, 490
AciI	CCGC	7 cut(s)	48, 103, 217, 223, 436, 488, 490
AcsI	RAATTY	1 cut(s)	272
AcyI	GRCGYC	2 cut(s)	237, 375
AfaI	GTAC	1 cut(s)	38
AflIII	ACRYGT	1 cut(s)	539
AgsI	TTSAA	1 cut(s)	247
AluBI	AGCT	1 cut(s)	198
AluI	AGCT	1 cut(s)	198
Alw26I	GTCTC	1 cut(s)	175
ApoI	RAATTY	1 cut(s)	272
AspLEI	GCGC	2 cut(s)	394, 405
AsuII	TTCGAA	1 cut(s)	469
BceAI	ACGGC	4 cut(s)	267, 349, 373, 416
BclI	TGATCA	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	175
BglII	AGATCT	1 cut(s)	81
BisI	GCNGC	2 cut(s)	224, 488
BlsI	GCNGC	2 cut(s)	225, 489
BmcAI	AGTACT	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	469
BsaBI	GATNNNNATC	1 cut(s)	111
BsaHI	GRCGYC	2 cut(s)	237, 375
BsaI	GGTCTC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	488
BsaWI	WCCGGW	1 cut(s)	321
Bse1I	ACTGG	2 cut(s)	167, 475
Bse3DI	GCAATG	1 cut(s)	513
Bse8I	GATNNNNATC	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	488
BseGI	GGATG	1 cut(s)	330
BseJI	GATNNNNATC	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	513
BseNI	ACTGG	2 cut(s)	167, 475
BseRI	GAGGAG	1 cut(s)	395
Bsh1236I	CGCG	7 cut(s)	50, 105, 148, 223, 264, 405, 490
Bsh1285I	CGRYCG	4 cut(s)	103, 177, 217, 322
BsiEI	CGRYCG	4 cut(s)	103, 177, 217, 322
BsiSI	CCGG	1 cut(s)	322
BsmAI	GTCTC	1 cut(s)	175
Bso31I	GGTCTC	1 cut(s)	175
Bsp119I	TTCGAA	1 cut(s)	469
Bsp143I	GATC	6 cut(s)	81, 106, 112, 174, 189, 228
Bsp68I	TCGCGA	2 cut(s)	148, 264
BspACI	CCGC	7 cut(s)	48, 103, 217, 223, 436, 488, 490
BspFNI	CGCG	7 cut(s)	50, 105, 148, 223, 264, 405, 490
BspHI	TCATGA	1 cut(s)	557
BspT104I	TTCGAA	1 cut(s)	469
BspTNI	GGTCTC	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	513
BsrI	ACTGG	2 cut(s)	167, 475
BssECI	CCNNGG	1 cut(s)	488
BssMI	GATC	6 cut(s)	81, 106, 112, 174, 189, 228
BssNI	GRCGYC	2 cut(s)	237, 375
Bst4CI	ACNGT	3 cut(s)	206, 334, 466
Bst6I	CTCTTC	1 cut(s)	27
BstACI	GRCGYC	2 cut(s)	237, 375
BstBI	TTCGAA	1 cut(s)	469
BstC8I	GCNNGC	2 cut(s)	221, 362
BstDSI	CCRYGG	1 cut(s)	488
BstF5I	GGATG	1 cut(s)	330
BstFNI	CGCG	7 cut(s)	50, 105, 148, 223, 264, 405, 490
BstHHI	GCGC	2 cut(s)	394, 405
BstKTI	GATC	6 cut(s)	84, 109, 115, 177, 192, 231
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	6 cut(s)	81, 106, 112, 174, 189, 228
BstMCI	CGRYCG	4 cut(s)	103, 177, 217, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	400
BstUI	CGCG	7 cut(s)	50, 105, 148, 223, 264, 405, 490
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	488
BtsCI	GGATG	1 cut(s)	330
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
BtuMI	TCGCGA	2 cut(s)	148, 264
Cac8I	GCNNGC	2 cut(s)	221, 362
CciI	TCATGA	1 cut(s)	557
CfoI	GCGC	2 cut(s)	394, 405
Cfr42I	CCGCGG	1 cut(s)	491
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	1 cut(s)	558
CviJI	RGCY	2 cut(s)	198, 419
CviKI_1	RGCY	2 cut(s)	198, 419
CviQI	GTAC	1 cut(s)	37
DpnI	GATC	6 cut(s)	83, 108, 114, 176, 191, 230
DpnII	GATC	6 cut(s)	81, 106, 112, 174, 189, 228
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	451
Eco31I	GGTCTC	1 cut(s)	175
FaeI	CATG	1 cut(s)	561
FaiI	YATR	5 cut(s)	269, 455, 501, 522, 559
FatI	CATG	1 cut(s)	557
FbaI	TGATCA	1 cut(s)	189
Fnu4HI	GCNGC	2 cut(s)	224, 488
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	2 cut(s)	224, 488
FspI	TGCGCA	1 cut(s)	393
GlaI	GCGC	2 cut(s)	393, 404
GluI	GCNGC	2 cut(s)	224, 488
HapII	CCGG	1 cut(s)	322
HgaI	GACGC	1 cut(s)	394
HhaI	GCGC	2 cut(s)	394, 405
Hin1I	GRCGYC	2 cut(s)	237, 375
Hin1II	CATG	1 cut(s)	561
Hin6I	GCGC	2 cut(s)	392, 403
HinP1I	GCGC	2 cut(s)	392, 403
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HindIII	AAGCTT	1 cut(s)	196
HinfI	GANTC	3 cut(s)	52, 312, 445
HpaII	CCGG	1 cut(s)	322
Hpy166II	GTNNAC	3 cut(s)	235, 285, 330
Hpy188I	TCNGA	2 cut(s)	194, 211
Hpy188III	TCNNGA	9 cut(s)	110, 116, 147, 172, 181, 263, 429, 449, 558
Hpy8I	GTNNAC	3 cut(s)	235, 285, 330
Hpy99I	CGWCG	9 cut(s)	101, 158, 161, 215, 242, 259, 377, 380, 410
HpyAV	CCTTC	3 cut(s)	160, 426, 433
HpyCH4III	ACNGT	3 cut(s)	206, 334, 466
HpyCH4IV	ACGT	5 cut(s)	186, 237, 257, 375, 541
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	400
HpySE526I	ACGT	5 cut(s)	186, 237, 257, 375, 541
Hsp92I	GRCGYC	2 cut(s)	237, 375
Hsp92II	CATG	1 cut(s)	561
HspAI	GCGC	2 cut(s)	392, 403
Ksp22I	TGATCA	1 cut(s)	189
KspI	CCGCGG	1 cut(s)	491
Kzo9I	GATC	6 cut(s)	81, 106, 112, 174, 189, 228
LpnPI	CCDG	7 cut(s)	92, 148, 166, 335, 434, 465, 488
MaeII	ACGT	5 cut(s)	186, 237, 257, 375, 541
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	6 cut(s)	83, 108, 114, 176, 191, 230
MboI	GATC	6 cut(s)	81, 106, 112, 174, 189, 228
MboII	GAAGA	2 cut(s)	41, 44
MflI	RGATCY	1 cut(s)	81
MluCI	AATT	3 cut(s)	123, 272, 336
MlyI	GAGTC	2 cut(s)	46, 321
MmeI	TCCRAC	2 cut(s)	234, 289
MnlI	CCTC	3 cut(s)	346, 373, 417
MspA1I	CMGCKG	1 cut(s)	490
MspI	CCGG	1 cut(s)	322
MvnI	CGCG	7 cut(s)	50, 105, 148, 223, 264, 405, 490
MwoI	GCNNNNNNNGC	1 cut(s)	400
NdeII	GATC	6 cut(s)	81, 106, 112, 174, 189, 228
NlaIII	CATG	1 cut(s)	561
NmuCI	GTSAC	1 cut(s)	460
NruI	TCGCGA	2 cut(s)	148, 264
NsbI	TGCGCA	1 cut(s)	393
NspV	TTCGAA	1 cut(s)	469
PagI	TCATGA	1 cut(s)	557
PcsI	WCGNNNNNNNCGW	4 cut(s)	102, 145, 183, 237
PfeI	GAWTC	1 cut(s)	445
PflFI	GACNNNGTC	1 cut(s)	374
PkrI	GCNGC	2 cut(s)	225, 489
Ple19I	CGATCG	1 cut(s)	177
PleI	GAGTC	2 cut(s)	46, 320
PpsI	GAGTC	2 cut(s)	46, 320
PsuI	RGATCY	1 cut(s)	81
PsyI	GACNNNGTC	1 cut(s)	374
PvuI	CGATCG	1 cut(s)	177
RruI	TCGCGA	2 cut(s)	148, 264
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SacII	CCGCGG	1 cut(s)	491
SatI	GCNGC	2 cut(s)	224, 488
Sau3AI	GATC	6 cut(s)	81, 106, 112, 174, 189, 228
ScaI	AGTACT	1 cut(s)	38
SchI	GAGTC	2 cut(s)	46, 321
SetI	ASST	9 cut(s)	123, 171, 189, 200, 240, 260, 378, 428, 544
Sfr303I	CCGCGG	1 cut(s)	491
SfuI	TTCGAA	1 cut(s)	469
SgrBI	CCGCGG	1 cut(s)	491
Sse9I	AATT	3 cut(s)	123, 272, 336
SsiI	CCGC	7 cut(s)	48, 103, 217, 223, 436, 488, 490
TaaI	ACNGT	3 cut(s)	206, 334, 466
TaiI	ACGT	5 cut(s)	189, 240, 260, 378, 544
TaqI	TCGA	5 cut(s)	173, 240, 318, 378, 469
TasI	AATT	3 cut(s)	123, 272, 336
TatI	WGTACW	1 cut(s)	36
TauI	GCSGC	2 cut(s)	226, 490
TfiI	GAWTC	1 cut(s)	445
TscAI	CASTG	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	460
Tsp45I	GTSAC	1 cut(s)	460
TspDTI	ATGAA	2 cut(s)	516, 524
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	62
Tth111I	GACNNNGTC	1 cut(s)	374
XapI	RAATTY	1 cut(s)	272
ZraI	GACGTC	2 cut(s)	238, 376
ZrmI	AGTACT	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.