Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004109

Physical Location & Seq

Genomic Coordinates Forward (+)

28928941 .. 28930502

Gene Structure 1562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00023430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGATGGGATGGGTGCATCCGGAAACCATGATCTTAGAGGTCACAGCGTCATTAGTGACTTTGAGTTACAAGACTTCATAGATGATGCAAACTTCGACCAGTTCATCGATCTTATTCGTGGAGAAAATGAAGATCCAGCAGCTCAGTTTAATCTTGACCTTACCAGCGAGTCATTCTTTGATAACCAACTTTGTCCAACTACTGATACGATGGATAAGGCGTCCATTATTGGAGATGCTGTATTGTATGTGCAAGACCTGGAAAAGCAGGCTAAGAAGCTGAAAGCTGAGATTTTGGGACTTCAAGCATCCTTAGAAGGATCACAGGAAAATCAAGGATCAACCCAAAATCCAACCAAGAATAAATTAGTTACAGACAATTACCATTTAATTCCCAAGGGAACCATTCAGATAGATGTGTCTCAAGTAAAGGAGAAAGGCTTTTATGTGAAAGTGGGATGCAACAGAGGAGTAGGGGTGGCCACAGCACTTTACAAGGCCATAGAATCCCTTACAAGCTTCACTGTTCAGAGTTCAAACTTGAACATGGTTAATTCCAAGAGATTCGAAATAACACTCGCTTTGAACGTAAAAGAGTGCGAGCACGAGGTCATGAACTTACCAAATTTGAAACTTTGGGTGACTGGGGCTTTTCTGAACCAGGGTTTTGAATTAGCTACAGGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

229

Amino Acids

25.26

Weight (kDa)

4.66

Isoelectric Point (pI)

26.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28160 AT2G28160
fragaria_vesca	FvH4_3g30650 FvH4_3g30660 FvH4_3g30660
malus_domestica	MD03G1127500.v1.1 MD03G1127600.v1.1 MD03G1129100.v1.1
prunus_persica	Prupe.6G112500_v2.0.a1 Prupe.6G112600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056871 RchiOBHm_Chr5g0056881
rosa_laevigata	RLG00000035133 RLG00000035134
rosa_multiflora	Rmu_sc0001460.1_g000011 Rmu_sc0001460.1_g000020
rosa_roxburghii	Rroxscaffold_1G00023420 Rroxscaffold_1G00023430
rosa_rugosa	Rorug05G0302900 Rorug05G0303000 Rorug05G0303200 Rorug05G0303300
rosa_samantha	Rh5AG373100 Rh5AG373300 Rh5BG384200 Rh5BG384300 Rh5CG407300 Rh5CG407500 Rh5DG397300 Rh5DG397600
rosa_wichuraiana	Rw5G034980 Rw5G035090 Rw5G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	20
AclWI	GGATC	3 cut(s)	128, 328, 346
AcoI	YGGCCR	1 cut(s)	480
AcsI	RAATTY	1 cut(s)	625
AcyI	GRCGYC	1 cut(s)	221
AgsI	TTSAA	6 cut(s)	305, 537, 544, 586, 631, 671
AjnI	CCWGG	2 cut(s)	258, 660
AluBI	AGCT	5 cut(s)	143, 280, 287, 519, 677
AluI	AGCT	5 cut(s)	143, 280, 287, 519, 677
Alw21I	GWGCWC	1 cut(s)	606
Alw26I	GTCTC	1 cut(s)	426
AlwI	GGATC	3 cut(s)	128, 328, 346
Aor13HI	TCCGGA	1 cut(s)	20
AoxI	GGCC	2 cut(s)	480, 498
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	625
AsuHPI	GGTGA	1 cut(s)	652
AsuII	TTCGAA	1 cut(s)	567
BalI	TGGCCA	1 cut(s)	482
BauI	CACGAG	1 cut(s)	605
Bbv12I	GWGCWC	1 cut(s)	606
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	2 cut(s)	4, 205
BciT130I	CCWGG	2 cut(s)	260, 662
BcoDI	GTCTC	1 cut(s)	426
BfmI	CTRYAG	1 cut(s)	678
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	2 cut(s)	260, 662
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	2 cut(s)	260, 662
BmrI	ACTGGG	1 cut(s)	654
BmsI	GCATC	5 cut(s)	26, 76, 226, 317, 449
BmuI	ACTGGG	1 cut(s)	654
Bpu14I	TTCGAA	1 cut(s)	567
BpuEI	CTTGAG	1 cut(s)	408
Bsa29I	ATCGAT	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	396, 661
BsaWI	WCCGGW	1 cut(s)	20
BsaXI	ACNNNNNCTCC	4 cut(s)	225, 255, 462, 492
Bse1I	ACTGG	2 cut(s)	100, 649
BseAI	TCCGGA	1 cut(s)	20
BseBI	CCWGG	2 cut(s)	260, 662
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	396, 661
BseGI	GGATG	5 cut(s)	10, 15, 17, 308, 464
BseMII	CTCAG	2 cut(s)	158, 279
BseNI	ACTGG	2 cut(s)	100, 649
BseRI	GAGGAG	1 cut(s)	483
BseXI	GCAGC	1 cut(s)	152
BshFI	GGCC	2 cut(s)	482, 500
BshVI	ATCGAT	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	606
BsiSI	CCGG	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	312
BsmAI	GTCTC	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	2 cut(s)	482, 500
Bsp119I	TTCGAA	1 cut(s)	567
Bsp1286I	GDGCHC	1 cut(s)	606
Bsp13I	TCCGGA	1 cut(s)	20
Bsp143I	GATC	5 cut(s)	31, 109, 133, 320, 338
BspANI	GGCC	2 cut(s)	482, 500
BspCNI	CTCAG	2 cut(s)	157, 280
BspDI	ATCGAT	1 cut(s)	108
BspEI	TCCGGA	1 cut(s)	20
BspHI	TCATGA	1 cut(s)	612
BspLI	GGNNCC	1 cut(s)	403
BspPI	GGATC	3 cut(s)	128, 328, 346
BspT104I	TTCGAA	1 cut(s)	567
BsrI	ACTGG	2 cut(s)	100, 649
BssECI	CCNNGG	2 cut(s)	396, 661
BssMI	GATC	5 cut(s)	31, 109, 133, 320, 338
BssNI	GRCGYC	1 cut(s)	221
BssSI	CACGAG	1 cut(s)	605
BssT1I	CCWWGG	1 cut(s)	396
Bst2BI	CACGAG	1 cut(s)	605
Bst2UI	CCWGG	2 cut(s)	260, 662
Bst4CI	ACNGT	1 cut(s)	526
BstACI	GRCGYC	1 cut(s)	221
BstBI	TTCGAA	1 cut(s)	567
BstC8I	GCNNGC	2 cut(s)	270, 602
BstDEI	CTNAG	5 cut(s)	35, 144, 273, 288, 313
BstF5I	GGATG	5 cut(s)	10, 15, 17, 308, 464
BstKTI	GATC	5 cut(s)	34, 112, 136, 323, 341
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	5 cut(s)	31, 109, 133, 320, 338
BstNI	CCWGG	2 cut(s)	260, 662
BstSCI	CCNGG	2 cut(s)	258, 660
BstSFI	CTRYAG	1 cut(s)	678
BstV1I	GCAGC	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
Bsu15I	ATCGAT	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	482, 500
BsuTUI	ATCGAT	1 cut(s)	108
BtsCI	GGATG	5 cut(s)	10, 15, 17, 308, 464
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	2 cut(s)	270, 602
CciI	TCATGA	1 cut(s)	612
ClaI	ATCGAT	1 cut(s)	108
CseI	GACGC	2 cut(s)	37, 210
CviAII	CATG	3 cut(s)	29, 547, 613
DdeI	CTNAG	5 cut(s)	35, 144, 273, 288, 313
DpnI	GATC	5 cut(s)	33, 111, 135, 322, 340
DpnII	GATC	5 cut(s)	31, 109, 133, 320, 338
EaeI	YGGCCR	1 cut(s)	480
Eco130I	CCWWGG	1 cut(s)	396
EcoRII	CCWGG	2 cut(s)	258, 660
EcoT14I	CCWWGG	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	3 cut(s)	32, 550, 616
FaiI	YATR	7 cut(s)	30, 80, 249, 447, 503, 548, 614
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	3 cut(s)	28, 546, 612
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	5 cut(s)	4, 17, 22, 295, 471
Fsp4HI	GCNGC	1 cut(s)	141
GluI	GCNGC	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	482, 500
HapII	CCGG	1 cut(s)	21
HgaI	GACGC	2 cut(s)	37, 210
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	3 cut(s)	32, 550, 616
HindIII	AAGCTT	1 cut(s)	517
HinfI	GANTC	3 cut(s)	170, 506, 564
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	1 cut(s)	652
Hpy188I	TCNGA	3 cut(s)	411, 531, 657
Hpy188III	TCNNGA	3 cut(s)	21, 155, 613
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	1 cut(s)	526
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	4 cut(s)	17, 89, 253, 462
HpyF3I	CTNAG	5 cut(s)	35, 144, 273, 288, 313
HpySE526I	ACGT	1 cut(s)	588
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	3 cut(s)	32, 550, 616
Kpn2I	TCCGGA	1 cut(s)	20
Kzo9I	GATC	5 cut(s)	31, 109, 133, 320, 338
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	5 cut(s)	26, 76, 226, 317, 449
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	5 cut(s)	41, 56, 66, 370, 640
MalI	GATC	5 cut(s)	33, 111, 135, 322, 340
MboI	GATC	5 cut(s)	31, 109, 133, 320, 338
MboII	GAAGA	1 cut(s)	143
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	606
MlsI	TGGCCA	1 cut(s)	482
MluCI	AATT	6 cut(s)	365, 379, 390, 553, 625, 671
MluNI	TGGCCA	1 cut(s)	482
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	2 cut(s)	221, 377
MnlI	CCTC	3 cut(s)	32, 461, 601
Mox20I	TGGCCA	1 cut(s)	482
MroI	TCCGGA	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	482
MseI	TTAA	3 cut(s)	150, 389, 552
Msp20I	TGGCCA	1 cut(s)	482
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	2 cut(s)	260, 662
MvaI	CCWGG	2 cut(s)	260, 662
NdeII	GATC	5 cut(s)	31, 109, 133, 320, 338
NlaIII	CATG	3 cut(s)	32, 550, 616
NlaIV	GGNNCC	1 cut(s)	403
NmuCI	GTSAC	3 cut(s)	41, 56, 640
NspV	TTCGAA	1 cut(s)	567
PagI	TCATGA	1 cut(s)	612
PcsI	WCGNNNNNNNCGW	1 cut(s)	585
PfeI	GAWTC	2 cut(s)	506, 564
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Psp6I	CCWGG	2 cut(s)	258, 660
PspGI	CCWGG	2 cut(s)	258, 660
PspN4I	GGNNCC	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	133
SaqAI	TTAA	3 cut(s)	150, 389, 552
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	5 cut(s)	31, 109, 133, 320, 338
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	260, 662
SduI	GDGCHC	1 cut(s)	606
SfaNI	GCATC	5 cut(s)	26, 76, 226, 317, 449
SfcI	CTRYAG	1 cut(s)	678
SfuI	TTCGAA	1 cut(s)	567
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
Sse9I	AATT	6 cut(s)	365, 379, 390, 553, 625, 671
StyD4I	CCNGG	2 cut(s)	258, 660
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	526
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	3 cut(s)	96, 108, 567
TasI	AATT	6 cut(s)	365, 379, 390, 553, 625, 671
TfiI	GAWTC	2 cut(s)	506, 564
Tru1I	TTAA	3 cut(s)	150, 389, 552
Tru9I	TTAA	3 cut(s)	150, 389, 552
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	3 cut(s)	41, 56, 640
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	3 cut(s)	41, 56, 640
TspDTI	ATGAA	4 cut(s)	67, 94, 144, 629
TspRI	CASTG	1 cut(s)	529
XapI	RAATTY	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.