Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004109

Physical Location & Seq

Genomic Coordinates Forward (+)

8117199 .. 8118769

Gene Structure 1571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G112600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGATCAATGGCTGCTTTGATGATTATAACCTGTTTTGTCCAGCAAGTACTACTCCAGGTGTGGTTTTTGGTTTCAATGATGCCGTTGCATCCGACCCAAGTGCTTCTTTTCTTGGCACATTATCCGACCCAAGTGCTCCTTTGCTTACTACATTACCAAATTTTGATGGAGAAATGAAGGGTGGGGAAGAAGATCATAATGGCGAGGATTCGTCTGGAACAACGACCACGAACAAGAGGCAAAAGGTTGATCGATCGAGAACCTTGGTCTCGGAGAGGAGGAGGAGGGGGAGGATGAAAGAAAGGCTCTATGCACTGCGGTCCTTGGTTCCGAACATAACTAAGATGGATAAGGCCTCCATTGTTGGAGATGCTGTGCTGTATGTACAAGACCTACAAAAGCAGGCAAAGAAGTTGAAAGCTGAGATTGAAAGCCTTGAAGCATCCTTACCAGGAGCAGATGATCATGAGGGATATCAAGACGGATCAACCGAAAATCCAAGCAAGAATAAAGTTACAAACAACATCAATTTAGTTTCCAAAGGCATCATTCAAATAGATGTGTCTCAAGTGGAGGAAAAAGGTTTTTATGTGAAGGTGGCATGTAACAAGGGAGGAGGAGTAGCCGCGGCACTTTACAAGGCTCTCGAATCCTTTACAAGCTTCAATGTTCAGAGTTCTAACTTGAACACAGTTTCGACTGATAGATTTGAGTTAACACTTGCTTTAAATGTAAAGGAATGTGAGCAGGACATCATCAACTTGCCAAACTTGAAACTTTGGGTGACGGGGGCTTTTCTGAATCAAGGTTTTGAATTGGCTTCTGGGTTCTCAGCTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

281

Amino Acids

30.43

Weight (kDa)

5.16

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28160 AT2G28160
fragaria_vesca	FvH4_3g30650 FvH4_3g30660 FvH4_3g30660
malus_domestica	MD03G1127500.v1.1 MD03G1127600.v1.1 MD03G1129100.v1.1
prunus_persica	Prupe.6G112500_v2.0.a1 Prupe.6G112600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056871 RchiOBHm_Chr5g0056881
rosa_laevigata	RLG00000035133 RLG00000035134
rosa_multiflora	Rmu_sc0001460.1_g000011 Rmu_sc0001460.1_g000020
rosa_roxburghii	Rroxscaffold_1G00023420 Rroxscaffold_1G00023430
rosa_rugosa	Rorug05G0302900 Rorug05G0303000 Rorug05G0303200 Rorug05G0303300
rosa_samantha	Rh5AG373100 Rh5AG373300 Rh5BG384200 Rh5BG384300 Rh5CG407300 Rh5CG407500 Rh5DG397300 Rh5DG397600
rosa_wichuraiana	Rw5G034980 Rw5G035090 Rw5G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	27
AccII	CGCG	1 cut(s)	629
AciI	CCGC	3 cut(s)	319, 627, 629
AclWI	GGATC	1 cut(s)	493
AcsI	RAATTY	1 cut(s)	160
AfaI	GTAC	2 cut(s)	49, 387
AgsI	TTSAA	9 cut(s)	76, 418, 431, 440, 554, 667, 688, 775, 815
AjnI	CCWGG	2 cut(s)	55, 451
AluBI	AGCT	3 cut(s)	422, 663, 836
AluI	AGCT	3 cut(s)	422, 663, 836
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	2 cut(s)	274, 570
AlwI	GGATC	1 cut(s)	493
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	1 cut(s)	12
ApoI	RAATTY	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	321
AsuHPI	GGTGA	1 cut(s)	796
AvaII	GGWCC	1 cut(s)	321
BarI	GAAGNNNNNNTAC	2 cut(s)	432, 464
Bbv12I	GWGCWC	1 cut(s)	139
BccI	CCATC	2 cut(s)	161, 340
BceAI	ACGGC	1 cut(s)	68
BcgI	CGANNNNNNTGC	4 cut(s)	83, 116, 117, 150
BciT130I	CCWGG	2 cut(s)	57, 453
BclI	TGATCA	2 cut(s)	3, 463
BcoDI	GTCTC	2 cut(s)	274, 570
BisI	GCNGC	3 cut(s)	13, 627, 630
BlsI	GCNGC	3 cut(s)	14, 628, 631
BmcAI	AGTACT	1 cut(s)	49
Bme1390I	CCNGG	2 cut(s)	57, 453
Bme18I	GGWCC	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	321
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	2 cut(s)	57, 453
BmsI	GCATC	5 cut(s)	70, 98, 361, 452, 555
BpmI	CTGGAG	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	552
Bsa29I	ATCGAT	1 cut(s)	253
BsaI	GGTCTC	1 cut(s)	274
BsaJI	CCNNGG	3 cut(s)	264, 324, 627
BsaXI	ACNNNNNCTCC	4 cut(s)	360, 390, 606, 636
BseBI	CCWGG	2 cut(s)	57, 453
BseCI	ATCGAT	1 cut(s)	253
BseDI	CCNNGG	3 cut(s)	264, 324, 627
BseGI	GGATG	3 cut(s)	89, 300, 443
BseMII	CTCAG	1 cut(s)	414
BseRI	GAGGAG	5 cut(s)	292, 295, 298, 630, 633
Bsh1236I	CGCG	1 cut(s)	629
Bsh1285I	CGRYCG	1 cut(s)	257
BshFI	GGCC	1 cut(s)	356
BshVI	ATCGAT	1 cut(s)	253
BsiEI	CGRYCG	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	139
BsmAI	GTCTC	2 cut(s)	274, 570
BsnI	GGCC	1 cut(s)	356
Bso31I	GGTCTC	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp1407I	TGTACA	1 cut(s)	385
Bsp143I	GATC	6 cut(s)	3, 193, 250, 254, 463, 485
BspACI	CCGC	3 cut(s)	319, 627, 629
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	1 cut(s)	415
BspDI	ATCGAT	1 cut(s)	253
BspFNI	CGCG	1 cut(s)	629
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	1 cut(s)	330
BspPI	GGATC	1 cut(s)	493
BspTNI	GGTCTC	1 cut(s)	274
BsrGI	TGTACA	1 cut(s)	385
BssECI	CCNNGG	3 cut(s)	264, 324, 627
BssMI	GATC	6 cut(s)	3, 193, 250, 254, 463, 485
BssT1I	CCWWGG	2 cut(s)	264, 324
Bst2UI	CCWGG	2 cut(s)	57, 453
Bst4CI	ACNGT	1 cut(s)	694
BstAUI	TGTACA	1 cut(s)	385
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	3 cut(s)	342, 423, 832
BstDSI	CCRYGG	1 cut(s)	627
BstF5I	GGATG	3 cut(s)	89, 300, 443
BstFNI	CGCG	1 cut(s)	629
BstKTI	GATC	6 cut(s)	6, 196, 253, 257, 466, 488
BstMAI	GTCTC	2 cut(s)	274, 570
BstMBI	GATC	6 cut(s)	3, 193, 250, 254, 463, 485
BstMCI	CGRYCG	1 cut(s)	257
BstNI	CCWGG	2 cut(s)	57, 453
BstNSI	RCATGY	1 cut(s)	606
BstSCI	CCNGG	2 cut(s)	55, 451
BstUI	CGCG	1 cut(s)	629
Bsu15I	ATCGAT	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	356
BsuTUI	ATCGAT	1 cut(s)	253
BtgI	CCRYGG	1 cut(s)	627
BtsCI	GGATG	3 cut(s)	89, 300, 443
BtsI	GCAGTG	1 cut(s)	314
BtsIMutI	CAGTG	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	405
CciI	TCATGA	1 cut(s)	466
Cfr13I	GGNCC	1 cut(s)	321
Cfr42I	CCGCGG	1 cut(s)	630
ClaI	ATCGAT	1 cut(s)	253
Csp6I	GTAC	2 cut(s)	48, 386
CviAII	CATG	2 cut(s)	467, 603
CviQI	GTAC	2 cut(s)	48, 386
DdeI	CTNAG	3 cut(s)	342, 423, 832
DpnI	GATC	6 cut(s)	5, 195, 252, 256, 465, 487
DpnII	GATC	6 cut(s)	3, 193, 250, 254, 463, 485
DraI	TTTAAA	1 cut(s)	729
Eco130I	CCWWGG	2 cut(s)	264, 324
Eco147I	AGGCCT	1 cut(s)	356
Eco31I	GGTCTC	1 cut(s)	274
Eco32I	GATATC	1 cut(s)	476
Eco47I	GGWCC	1 cut(s)	321
EcoRII	CCWGG	2 cut(s)	55, 451
EcoRV	GATATC	1 cut(s)	476
EcoT14I	CCWWGG	2 cut(s)	264, 324
ErhI	CCWWGG	2 cut(s)	264, 324
FaeI	CATG	2 cut(s)	470, 606
FaiI	YATR	8 cut(s)	27, 198, 312, 338, 384, 468, 591, 604
FalI	AAGNNNNNCTT	4 cut(s)	91, 123, 124, 156
FatI	CATG	2 cut(s)	466, 602
FbaI	TGATCA	2 cut(s)	3, 463
Fnu4HI	GCNGC	3 cut(s)	13, 627, 630
FokI	GGATG	3 cut(s)	76, 307, 430
Fsp4HI	GCNGC	3 cut(s)	13, 627, 630
GluI	GCNGC	3 cut(s)	13, 627, 630
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	356
Hin1II	CATG	2 cut(s)	470, 606
HincII	GTYRAC	1 cut(s)	717
HindII	GTYRAC	1 cut(s)	717
HindIII	AAGCTT	1 cut(s)	661
HinfI	GANTC	3 cut(s)	209, 650, 802
HpaI	GTTAAC	1 cut(s)	717
HphI	GGTGA	1 cut(s)	796
Hpy166II	GTNNAC	1 cut(s)	717
Hpy188I	TCNGA	6 cut(s)	94, 127, 274, 333, 675, 801
Hpy188III	TCNNGA	5 cut(s)	216, 258, 467, 479, 647
Hpy8I	GTNNAC	1 cut(s)	717
HpyAV	CCTTC	2 cut(s)	172, 589
HpyCH4III	ACNGT	1 cut(s)	694
HpyCH4V	TGCA	2 cut(s)	89, 314
HpyF3I	CTNAG	3 cut(s)	342, 423, 832
Hsp92II	CATG	2 cut(s)	470, 606
Ksp22I	TGATCA	2 cut(s)	3, 463
KspAI	GTTAAC	1 cut(s)	717
KspI	CCGCGG	1 cut(s)	630
Kzo9I	GATC	6 cut(s)	3, 193, 250, 254, 463, 485
LmnI	GCTCC	2 cut(s)	142, 455
LweI	GCATC	5 cut(s)	70, 98, 361, 452, 555
MaeIII	GTNAC	3 cut(s)	514, 605, 784
MalI	GATC	6 cut(s)	5, 195, 252, 256, 465, 487
MboI	GATC	6 cut(s)	3, 193, 250, 254, 463, 485
MboII	GAAGA	2 cut(s)	200, 203
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	3 cut(s)	160, 529, 815
MmeI	TCCRAC	3 cut(s)	117, 150, 346
MseI	TTAA	2 cut(s)	716, 728
MspA1I	CMGCKG	1 cut(s)	629
MspR9I	CCNGG	2 cut(s)	57, 453
MvaI	CCWGG	2 cut(s)	57, 453
MvnI	CGCG	1 cut(s)	629
NdeII	GATC	6 cut(s)	3, 193, 250, 254, 463, 485
NlaIII	CATG	2 cut(s)	470, 606
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	1 cut(s)	784
NspI	RCATGY	1 cut(s)	606
PagI	TCATGA	1 cut(s)	466
PceI	AGGCCT	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	1 cut(s)	489
PfeI	GAWTC	3 cut(s)	209, 650, 802
PkrI	GCNGC	3 cut(s)	14, 628, 631
Ple19I	CGATCG	1 cut(s)	257
PsiI	TTATAA	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	55, 451
PspGI	CCWGG	2 cut(s)	55, 451
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	1 cut(s)	321
PvuI	CGATCG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	49, 387
RsaNI	GTAC	2 cut(s)	48, 386
SacII	CCGCGG	1 cut(s)	630
SaqAI	TTAA	2 cut(s)	716, 728
SatI	GCNGC	3 cut(s)	13, 627, 630
Sau3AI	GATC	6 cut(s)	3, 193, 250, 254, 463, 485
Sau96I	GGNCC	1 cut(s)	321
ScaI	AGTACT	1 cut(s)	49
ScrFI	CCNGG	2 cut(s)	57, 453
SduI	GDGCHC	1 cut(s)	139
SfaNI	GCATC	5 cut(s)	70, 98, 361, 452, 555
Sfr303I	CCGCGG	1 cut(s)	630
SgrBI	CCGCGG	1 cut(s)	630
SinI	GGWCC	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	567
SmoI	CTYRAG	1 cut(s)	567
Sse9I	AATT	3 cut(s)	160, 529, 815
SseBI	AGGCCT	1 cut(s)	356
SsiI	CCGC	3 cut(s)	319, 627, 629
StuI	AGGCCT	1 cut(s)	356
StyD4I	CCNGG	2 cut(s)	55, 451
StyI	CCWWGG	2 cut(s)	264, 324
TaaI	ACNGT	1 cut(s)	694
TaqI	TCGA	4 cut(s)	253, 257, 648, 698
TasI	AATT	3 cut(s)	160, 529, 815
TatI	WGTACW	2 cut(s)	47, 385
TauI	GCSGC	2 cut(s)	629, 632
TfiI	GAWTC	3 cut(s)	209, 650, 802
Tru1I	TTAA	2 cut(s)	716, 728
Tru9I	TTAA	2 cut(s)	716, 728
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	784
TseI	GCWGC	1 cut(s)	12
Tsp45I	GTSAC	1 cut(s)	784
TspDTI	ATGAA	2 cut(s)	191, 311
TspGWI	ACGGA	1 cut(s)	498
TspRI	CASTG	1 cut(s)	321
VpaK11BI	GGWCC	1 cut(s)	321
XapI	RAATTY	1 cut(s)	160
XceI	RCATGY	1 cut(s)	606
ZrmI	AGTACT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.