FvH4_3g30650

Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004109
Physical Location & Seq
Reverse (-)
24012205 .. 24014599
2395 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30650.t1

Sequence Viewer

Length: 984 bp
ATGGAGGGGATGTGTGCATATGGAAACCAAGATCTTGGAGGTCACAGTATCATTAATGATTTTGAGTTGCAAGACTTCATAGATGATGAAAACTTCGACCAGTTCATCAATCTTATTCGTGGAGAAAATGAAGATCCAGCAGCTCAATTTGATATCGACCTTATCACCGGGTCATGCTTTAATAACCAGCTGCTTGGTCCAATTACTGATCCGGTCGGTTTGTTTGGTTTTGATCATAATACTGCAGTCCTATGCGATCCAACTCCTCTTCTTACTACATTACCGAGTTCTGGGAAAGAATTGAACGACATTCAAGAAGAAGATAATGATGAGGAGGACTCGTGTGGGACGACGACAACAACGACCACCACAAACACCACAACTACGACGACTAAGAAGCCAAAGGTTGATCGGTCGAGAACCTTGGTTTCAGAAAGGAGGAGGAGAGGGAGGATGAAGGATAAACTGTATGCATTGAGATCCTTGGTTCCTAACATCACTAAGATGGATAAGGCGTCCATTATTGGAGATGCTGTAATGTATGTGCAAGACCTGCAAAAGCAAGCTAAGAAGCTGAAAGGTGAAATTTCTGGGCTTCAAGCATCCTTGGAAGGATCAAGGGATATTCAAGGATCAACCCAAAATCCAACCAAGAATATATTAGTTGCAGACAATTACCGTTTACAGACCAAGGAAATCGTTCAGATAGATGTGTCTCAAGTAGAGGAGAAAGGCTTTCATGTGAAAGTGGGATGCAACAGAGGAGTAGGGGTGGCCGCAGCACTTTACAGAGCTATAGAATCCCTTACAAGCTTCAATGTTCAGAGTTCAAACTTGAACATGGTTAATTCCAAGATATTCGAAATAACACTCATTTTGAACGTAAAAGAGTGCGAGCAGGAGATCATGAACTTACCAAATTTGAAATTTTGGGTGACTGGGGCTTTTCTGAACCAGGGTTTTGAATTAGCCACAGGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

328

Amino Acids

36.23

Weight (kDa)

4.76

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 142 - 186 7.7e-10 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 561
AciI CCGC 1 cut(s) 777
AclWI GGATC 6 cut(s) 128, 203, 251, 474, 622, 640
AcoI YGGCCR 1 cut(s) 774
AcsI RAATTY 3 cut(s) 585, 919, 926
AcyI GRCGYC 1 cut(s) 515
AfiI CCNNNNNNNGG 1 cut(s) 290
AjnI CCWGG 1 cut(s) 954
AluBI AGCT 6 cut(s) 143, 190, 566, 574, 794, 813
AluI AGCT 6 cut(s) 143, 190, 566, 574, 794, 813
Alw26I GTCTC 1 cut(s) 720
AlwI GGATC 6 cut(s) 128, 203, 251, 474, 622, 640
AoxI GGCC 1 cut(s) 774
ApeKI GCWGC 3 cut(s) 140, 190, 779
ApoI RAATTY 3 cut(s) 585, 919, 926
AseI ATTAAT 1 cut(s) 54
Asp700I GAANNNNTTC 1 cut(s) 699
AspS9I GGNCC 1 cut(s) 197
AsuC2I CCSGG 1 cut(s) 169
AsuHPI GGTGA 3 cut(s) 157, 593, 946
AsuII TTCGAA 1 cut(s) 861
AvaII GGWCC 1 cut(s) 197
BauI CACGAG 1 cut(s) 340
BbvI GCAGC 3 cut(s) 152, 177, 791
BccI CCATC 1 cut(s) 499
BciT130I CCWGG 1 cut(s) 956
BclI TGATCA 1 cut(s) 232
BcnI CCSGG 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 720
BfmI CTRYAG 2 cut(s) 243, 795
BfuAI ACCTGC 1 cut(s) 561
BglII AGATCT 1 cut(s) 31
BisI GCNGC 4 cut(s) 141, 191, 777, 780
BlsI GCNGC 4 cut(s) 142, 192, 778, 781
Bme1390I CCNGG 2 cut(s) 169, 956
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 489
BmrFI CCNGG 2 cut(s) 169, 956
BmrI ACTGGG 1 cut(s) 948
BmsI GCATC 3 cut(s) 520, 611, 743
BmuI ACTGGG 1 cut(s) 948
BplI GAGNNNNNCTC 2 cut(s) 323, 355
Bpu14I TTCGAA 1 cut(s) 861
BpuEI CTTGAG 1 cut(s) 702
BpuMI CCSGG 1 cut(s) 169
BsaHI GRCGYC 1 cut(s) 515
BsaJI CCNNGG 5 cut(s) 423, 483, 606, 690, 955
BsaWI WCCGGW 1 cut(s) 211
BsaXI ACNNNNNCTCC 7 cut(s) 26, 326, 356, 519, 549, 756, 786
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse1I ACTGG 2 cut(s) 100, 943
BseBI CCWGG 1 cut(s) 956
BseDI CCNNGG 5 cut(s) 423, 483, 606, 690, 955
BseGI GGATG 4 cut(s) 15, 459, 602, 758
BseLI CCNNNNNNNGG 1 cut(s) 290
BseNI ACTGG 2 cut(s) 100, 943
BseRI GAGGAG 6 cut(s) 255, 347, 454, 457, 740, 777
BseXI GCAGC 3 cut(s) 152, 177, 791
Bsh1285I CGRYCG 2 cut(s) 216, 416
BshFI GGCC 1 cut(s) 776
BsiEI CGRYCG 2 cut(s) 216, 416
BsiSI CCGG 2 cut(s) 168, 212
BslFI GGGAC 1 cut(s) 361
BslI CCNNNNNNNGG 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 720
BsmFI GGGAC 1 cut(s) 361
BsnI GGCC 1 cut(s) 776
Bsp119I TTCGAA 1 cut(s) 861
BspACI CCGC 1 cut(s) 777
BspANI GGCC 1 cut(s) 776
BspHI TCATGA 1 cut(s) 906
BspLI GGNNCC 1 cut(s) 489
BspMAI CTGCAG 1 cut(s) 247
BspMI ACCTGC 1 cut(s) 561
BspPI GGATC 6 cut(s) 128, 203, 251, 474, 622, 640
BspT104I TTCGAA 1 cut(s) 861
BsrI ACTGG 2 cut(s) 100, 943
BssECI CCNNGG 5 cut(s) 423, 483, 606, 690, 955
BssNI GRCGYC 1 cut(s) 515
BssSI CACGAG 1 cut(s) 340
BssT1I CCWWGG 4 cut(s) 423, 483, 606, 690
Bst2BI CACGAG 1 cut(s) 340
Bst2UI CCWGG 1 cut(s) 956
Bst4CI ACNGT 3 cut(s) 47, 468, 680
Bst6I CTCTTC 1 cut(s) 273
BstACI GRCGYC 1 cut(s) 515
BstAPI GCANNNNNTGC 1 cut(s) 553
BstBI TTCGAA 1 cut(s) 861
BstC8I GCNNGC 2 cut(s) 564, 896
BstDEI CTNAG 3 cut(s) 393, 501, 567
BstF5I GGATG 4 cut(s) 15, 459, 602, 758
BstMAI GTCTC 1 cut(s) 720
BstMCI CGRYCG 2 cut(s) 216, 416
BstMWI GCNNNNNNNGC 1 cut(s) 553
BstNI CCWGG 1 cut(s) 956
BstSCI CCNGG 2 cut(s) 167, 954
BstSFI CTRYAG 2 cut(s) 243, 795
BstV1I GCAGC 3 cut(s) 152, 177, 791
BstX2I RGATCY 3 cut(s) 31, 133, 479
BstXI CCANNNNNNTGG 2 cut(s) 35, 194
BstYI RGATCY 3 cut(s) 31, 133, 479
BsuRI GGCC 1 cut(s) 776
BtsCI GGATG 4 cut(s) 15, 459, 602, 758
BveI ACCTGC 1 cut(s) 561
Cac8I GCNNGC 2 cut(s) 564, 896
CciI TCATGA 1 cut(s) 906
Cfr13I GGNCC 1 cut(s) 197
CseI GACGC 1 cut(s) 504
CviAII CATG 4 cut(s) 174, 740, 841, 907
DdeI CTNAG 3 cut(s) 393, 501, 567
EaeI YGGCCR 1 cut(s) 774
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco130I CCWWGG 4 cut(s) 423, 483, 606, 690
Eco32I GATATC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 954
EcoRV GATATC 1 cut(s) 154
EcoT14I CCWWGG 4 cut(s) 423, 483, 606, 690
EcoT22I ATGCAT 1 cut(s) 475
ErhI CCWWGG 4 cut(s) 423, 483, 606, 690
FaeI CATG 4 cut(s) 177, 743, 844, 910
FaqI GGGAC 1 cut(s) 361
FatI CATG 4 cut(s) 173, 739, 840, 906
FauNDI CATATG 1 cut(s) 19
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 4 cut(s) 141, 191, 777, 780
FokI GGATG 4 cut(s) 22, 466, 589, 765
Fsp4HI GCNGC 4 cut(s) 141, 191, 777, 780
GluI GCNGC 4 cut(s) 141, 191, 777, 780
HaeIII GGCC 1 cut(s) 776
HapII CCGG 2 cut(s) 168, 212
HgaI GACGC 1 cut(s) 504
Hin1I GRCGYC 1 cut(s) 515
Hin1II CATG 4 cut(s) 177, 743, 844, 910
HindIII AAGCTT 1 cut(s) 811
HinfI GANTC 2 cut(s) 338, 800
HpaII CCGG 2 cut(s) 168, 212
HphI GGTGA 3 cut(s) 157, 593, 946
Hpy166II GTNNAC 1 cut(s) 683
Hpy188I TCNGA 4 cut(s) 433, 705, 825, 951
Hpy188III TCNNGA 3 cut(s) 314, 417, 907
Hpy8I GTNNAC 1 cut(s) 683
Hpy99I CGWCG 2 cut(s) 355, 391
HpyAV CCTTC 2 cut(s) 451, 605
HpyCH4III ACNGT 3 cut(s) 47, 468, 680
HpyCH4IV ACGT 1 cut(s) 882
HpyCH4V TGCA 8 cut(s) 17, 70, 245, 473, 547, 556, 668, 756
HpyF10VI GCNNNNNNNGC 1 cut(s) 553
HpyF3I CTNAG 3 cut(s) 393, 501, 567
HpySE526I ACGT 1 cut(s) 882
Hsp92I GRCGYC 1 cut(s) 515
Hsp92II CATG 4 cut(s) 177, 743, 844, 910
Ksp22I TGATCA 1 cut(s) 232
Lsp1109I GCAGC 3 cut(s) 152, 177, 791
LweI GCATC 3 cut(s) 520, 611, 743
MaeII ACGT 1 cut(s) 882
MaeIII GTNAC 2 cut(s) 41, 934
MboII GAAGA 4 cut(s) 143, 260, 329, 332
MflI RGATCY 3 cut(s) 31, 133, 479
MluCI AATT 9 cut(s) 146, 201, 299, 585, 673, 847, 919, 926, 965
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 2 cut(s) 284, 671
Mph1103I ATGCAT 1 cut(s) 475
MroXI GAANNNNTTC 1 cut(s) 699
MseI TTAA 3 cut(s) 54, 180, 846
MslI CAYNNNNRTG 1 cut(s) 503
MspA1I CMGCKG 1 cut(s) 190
MspI CCGG 2 cut(s) 168, 212
MspR9I CCNGG 2 cut(s) 169, 956
MvaI CCWGG 1 cut(s) 956
MwoI GCNNNNNNNGC 1 cut(s) 553
NciI CCSGG 1 cut(s) 169
NdeI CATATG 1 cut(s) 19
NlaIII CATG 4 cut(s) 177, 743, 844, 910
NlaIV GGNNCC 1 cut(s) 489
NmuCI GTSAC 2 cut(s) 41, 934
NsiI ATGCAT 1 cut(s) 475
NspV TTCGAA 1 cut(s) 861
PagI TCATGA 1 cut(s) 906
PcsI WCGNNNNNNNCGW 2 cut(s) 347, 359
PdmI GAANNNNTTC 1 cut(s) 699
PfeI GAWTC 1 cut(s) 800
PkrI GCNGC 4 cut(s) 142, 192, 778, 781
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
PshBI ATTAAT 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 954
PspGI CCWGG 1 cut(s) 954
PspN4I GGNNCC 1 cut(s) 489
PspPI GGNCC 1 cut(s) 197
PstI CTGCAG 1 cut(s) 247
PsuI RGATCY 3 cut(s) 31, 133, 479
PvuII CAGCTG 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 503
SaqAI TTAA 3 cut(s) 54, 180, 846
SatI GCNGC 4 cut(s) 141, 191, 777, 780
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 2 cut(s) 169, 956
SfaNI GCATC 3 cut(s) 520, 611, 743
SfcI CTRYAG 2 cut(s) 243, 795
SfuI TTCGAA 1 cut(s) 861
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 717
SmoI CTYRAG 1 cut(s) 717
Sse9I AATT 9 cut(s) 146, 201, 299, 585, 673, 847, 919, 926, 965
SsiI CCGC 1 cut(s) 777
StyD4I CCNGG 2 cut(s) 167, 954
StyI CCWWGG 4 cut(s) 423, 483, 606, 690
TaaI ACNGT 3 cut(s) 47, 468, 680
TaiI ACGT 1 cut(s) 885
TaqI TCGA 4 cut(s) 96, 156, 416, 861
TaqII GACCGA 1 cut(s) 402
TasI AATT 9 cut(s) 146, 201, 299, 585, 673, 847, 919, 926, 965
TauI GCSGC 1 cut(s) 779
TfiI GAWTC 1 cut(s) 800
Tru1I TTAA 3 cut(s) 54, 180, 846
Tru9I TTAA 3 cut(s) 54, 180, 846
TseFI GTSAC 2 cut(s) 41, 934
TseI GCWGC 3 cut(s) 140, 190, 779
Tsp45I GTSAC 2 cut(s) 41, 934
TspDTI ATGAA 7 cut(s) 67, 94, 102, 144, 470, 728, 923
VpaK11BI GGWCC 1 cut(s) 197
VspI ATTAAT 1 cut(s) 54
XapI RAATTY 3 cut(s) 585, 919, 926
XmnI GAANNNNTTC 1 cut(s) 699
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.