Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004109

Physical Location & Seq

Genomic Coordinates Forward (+)

35315482 .. 35316003

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0303200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTCAATCCAAAGCCTTACCATGGTTATTACGGACAGTTCCCCCTTGTACCAGAGCATTGGCGTTGAAGATGCCTCCAACTATGAATCCCTTACAAGCTTCACACAAACAATGTGGCCTGATGGTCATGACCAGTGCTGTACTGATGCTTCCGATGTTGATTTATTTCGTTACGACAGTAACACTGTGATTGCCATGGTGAAGAAGCTGGATGAGCTTAAGGAAATGATTGAAATGATGATTCTTGATAGCTATGGTTTGGGAGAGAACTCAGATTCAATCATGGCGTGTAAGACGCTGCTACGAGTACAGAAGTACGGTGCACCTCCATTAGGGGAGTATGTGAATGGGCTCAATGCTCACACTGACAAAGCATTGACCGCAATCCTTTGTGATGATCAAGTTTCAGGGCTTGAATTTGAAACTAAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

144

Amino Acids

15.94

Weight (kDa)

4.17

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28160 AT2G28160
fragaria_vesca	FvH4_3g30650 FvH4_3g30660 FvH4_3g30660
malus_domestica	MD03G1127500.v1.1 MD03G1127600.v1.1 MD03G1129100.v1.1
prunus_persica	Prupe.6G112500_v2.0.a1 Prupe.6G112600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056871 RchiOBHm_Chr5g0056881
rosa_laevigata	RLG00000035133 RLG00000035134
rosa_multiflora	Rmu_sc0001460.1_g000011 Rmu_sc0001460.1_g000020
rosa_roxburghii	Rroxscaffold_1G00023420 Rroxscaffold_1G00023430
rosa_rugosa	Rorug05G0302900 Rorug05G0303000 Rorug05G0303200 Rorug05G0303300
rosa_samantha	Rh5AG373100 Rh5AG373300 Rh5BG384200 Rh5BG384300 Rh5CG407300 Rh5CG407500 Rh5DG397300 Rh5DG397600
rosa_wichuraiana	Rw5G034980 Rw5G035090 Rw5G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	416
AfaI	GTAC	4 cut(s)	50, 142, 309, 317
AfiI	CCNNNNNNNGG	2 cut(s)	22, 332
AflII	CTTAAG	1 cut(s)	218
AgsI	TTSAA	5 cut(s)	68, 233, 279, 416, 422
AluBI	AGCT	4 cut(s)	99, 208, 217, 252
AluI	AGCT	4 cut(s)	99, 208, 217, 252
Alw21I	GWGCWC	1 cut(s)	325
Alw44I	GTGCAC	1 cut(s)	321
AoxI	GGCC	1 cut(s)	116
ApaLI	GTGCAC	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	298
ApoI	RAATTY	1 cut(s)	416
AsuHPI	GGTGA	1 cut(s)	211
BaeGI	GKGCMC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	354
BarI	GAAGNNNNNNTAC	2 cut(s)	133, 165
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	285
BccI	CCATC	1 cut(s)	116
BclI	TGATCA	1 cut(s)	397
BfrI	CTTAAG	1 cut(s)	218
BisI	GCNGC	1 cut(s)	299
BlsI	GCNGC	1 cut(s)	300
BmsI	GCATC	2 cut(s)	61, 136
BsaJI	CCNNGG	2 cut(s)	21, 195
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 332
Bse1I	ACTGG	1 cut(s)	133
BseDI	CCNNGG	2 cut(s)	21, 195
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	2 cut(s)	22, 332
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	133
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	285
BshFI	GGCC	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	325
BslI	CCNNNNNNNGG	2 cut(s)	22, 332
BsnI	GGCC	1 cut(s)	118
Bsp1286I	GDGCHC	2 cut(s)	325, 354
Bsp143I	GATC	1 cut(s)	397
Bsp19I	CCATGG	2 cut(s)	21, 195
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	1 cut(s)	118
BspCNI	CTCAG	1 cut(s)	284
BspHI	TCATGA	1 cut(s)	127
BspTI	CTTAAG	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	2 cut(s)	21, 195
BssMI	GATC	1 cut(s)	397
BssT1I	CCWWGG	2 cut(s)	21, 195
Bst4CI	ACNGT	4 cut(s)	38, 179, 187, 320
BstAFI	CTTAAG	1 cut(s)	218
BstDEI	CTNAG	1 cut(s)	271
BstDSI	CCRYGG	2 cut(s)	21, 195
BstENI	CCTNNNNNAGG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	217
BstKTI	GATC	1 cut(s)	400
BstMBI	GATC	1 cut(s)	397
BstMWI	GCNNNNNNNGC	2 cut(s)	214, 380
BstSLI	GKGCMC	1 cut(s)	325
BstV1I	GCAGC	1 cut(s)	285
BstXI	CCANNNNNNTGG	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	118
BtgI	CCRYGG	2 cut(s)	21, 195
BtsCI	GGATG	1 cut(s)	217
BtsIMutI	CAGTG	3 cut(s)	140, 183, 363
CciI	TCATGA	1 cut(s)	127
CseI	GACGC	1 cut(s)	304
Csp6I	GTAC	4 cut(s)	49, 141, 308, 316
CspCI	CAANNNNNGTGG	2 cut(s)	95, 130
CviAII	CATG	4 cut(s)	22, 128, 196, 283
CviJI	RGCY	8 cut(s)	15, 99, 118, 208, 217, 252, 352, 412
CviKI_1	RGCY	8 cut(s)	15, 99, 118, 208, 217, 252, 352, 412
CviQI	GTAC	4 cut(s)	49, 141, 308, 316
DdeI	CTNAG	1 cut(s)	271
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
Eco130I	CCWWGG	2 cut(s)	21, 195
Eco24I	GRGCYC	1 cut(s)	354
EcoNI	CCTNNNNNAGG	1 cut(s)	330
EcoT14I	CCWWGG	2 cut(s)	21, 195
EcoT38I	GRGCYC	1 cut(s)	354
ErhI	CCWWGG	2 cut(s)	21, 195
FaeI	CATG	4 cut(s)	25, 131, 199, 286
FaiI	YATR	7 cut(s)	23, 84, 129, 197, 255, 284, 342
FatI	CATG	4 cut(s)	21, 127, 195, 282
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	1 cut(s)	299
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	1 cut(s)	299
GluI	GCNGC	1 cut(s)	299
HaeIII	GGCC	1 cut(s)	118
HgaI	GACGC	1 cut(s)	304
Hin1II	CATG	4 cut(s)	25, 131, 199, 286
HindIII	AAGCTT	1 cut(s)	97
HinfI	GANTC	3 cut(s)	86, 241, 275
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	2 cut(s)	154, 274
Hpy188III	TCNNGA	2 cut(s)	128, 245
Hpy8I	GTNNAC	1 cut(s)	323
HpyCH4III	ACNGT	4 cut(s)	38, 179, 187, 320
HpyCH4V	TGCA	1 cut(s)	323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	214, 380
HpyF3I	CTNAG	1 cut(s)	271
Hsp92II	CATG	4 cut(s)	25, 131, 199, 286
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	1 cut(s)	397
LpnPI	CCDG	5 cut(s)	65, 132, 146, 194, 393
Lsp1109I	GCAGC	1 cut(s)	285
LweI	GCATC	2 cut(s)	61, 136
MaeIII	GTNAC	2 cut(s)	170, 179
MalI	GATC	1 cut(s)	399
MboI	GATC	1 cut(s)	397
MboII	GAAGA	2 cut(s)	80, 214
MhlI	GDGCHC	2 cut(s)	325, 354
MluCI	AATT	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	2 cut(s)	85, 336
MseI	TTAA	1 cut(s)	219
MspCI	CTTAAG	1 cut(s)	218
MwoI	GCNNNNNNNGC	2 cut(s)	214, 380
NcoI	CCATGG	2 cut(s)	21, 195
NdeII	GATC	1 cut(s)	397
NlaIII	CATG	4 cut(s)	25, 131, 199, 286
PagI	TCATGA	1 cut(s)	127
PfeI	GAWTC	3 cut(s)	86, 241, 275
PkrI	GCNGC	1 cut(s)	300
RsaI	GTAC	4 cut(s)	50, 142, 309, 317
RsaNI	GTAC	4 cut(s)	49, 141, 308, 316
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	1 cut(s)	299
Sau3AI	GATC	1 cut(s)	397
SduI	GDGCHC	2 cut(s)	325, 354
SetI	ASST	5 cut(s)	101, 210, 219, 254, 328
SfaNI	GCATC	2 cut(s)	61, 136
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	1 cut(s)	416
SsiI	CCGC	1 cut(s)	381
StyI	CCWWGG	2 cut(s)	21, 195
TaaI	ACNGT	4 cut(s)	38, 179, 187, 320
TasI	AATT	1 cut(s)	416
TatI	WGTACW	2 cut(s)	140, 307
TfiI	GAWTC	3 cut(s)	86, 241, 275
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	3 cut(s)	140, 190, 370
TseI	GCWGC	1 cut(s)	298
TspDTI	ATGAA	1 cut(s)	99
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	3 cut(s)	140, 190, 370
Vha464I	CTTAAG	1 cut(s)	218
VneI	GTGCAC	1 cut(s)	321
XagI	CCTNNNNNAGG	1 cut(s)	330
XapI	RAATTY	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.