Rorug05G0303000

Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004109
Physical Location & Seq
Reverse (-)
35300239 .. 35303119
2881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0303000.1

Sequence Viewer

Length: 1539 bp
ATGGACCTCCAGTTCTCTTCCTTCCATGTCATACTTACCTTTTCTCTCTTTGTGATTATGGTACTCAAAATAGCAAGAAGAGGCAAAACCAAAAGCTCCAGTTCAAATCTACCACCAGGACCACGCAAGCTACCCTTTATAGGGAACATCCACCAGCTTGCTGGATCTCTACCCCATCACAGTCTGCGAAACTTGGCCAAGAAATATGGACCCTTTATGCACCTAAGGCTTGGAGAAGTTTCCACCGTAGTTGTTTCATCAGCAGAGTTTGCCAGAGAGGTGATGAAAACTCACGACGCTACTTTTGCATCAAGGCCCCATCTCCTTGCTGCAACCATCGTGTCTTACAACGCCACAAACATTGTGTTTGCAAAATATGGTGACTACTGGAGACAACTGCGAAAAATTTGCACACTAGAGCTCTTAAGCACAAAGCGTGTTCAATCTTATCGACCTATTAGAGAGGAAGAGATGCTGAATCTCATCAAATGGATTGCTTCGAAAGCCAGGTCACCTATCAATCTTACAGAGAAAATTCACTCATCTACATATATGATCACTTCACGAGCAGCCTTTGGTAAAAAGAGCAAATATCATGAAAATTTTATAGATGTTGTGAAGGAAGGTATACAATTGGGAGGAGGCTTTGATCTTGCAGATGTCTTTCCTTCTTTCAGGTTGCTTCATATGATAACTGGGATGAGGCCTAAACTTGAAAGGTTGCACAAAAAAACTGACAAGATACTGGAAAACATCATCAAAGAACACAAAGATAAGGCAACATCAAAAGGTTCTGAGAGGGAAGCACAGGAAGACCTGGTAGATGTACTCTTAAAATTTCACGAGGGTAATGATGGCCCTGAGTTTAACCTAACTACTGACAACATCAAAGCAGTAATCTTGGACATTTTCGGAGCTGGAAGTGAGACATCAGCAACAGCTGTAGACTGGGCAATGTCAGAAATGGTTAAAAATCCACAAATAATGAAAAGGGCACAGGATGAGGTGAGGGAAGTGTTCAATAGAAAAGGGCAGGTAAGTGAAACAAGCATCAAAGAGATGAAATATTTAAACTCAATTATTAAGGAGACACTCAGATTGCACCCATCTGCCCCTCTGTTAATTCCAAGAGAATGCGGAGAGAGGTGTGAGATTGGTGGATATGAAATACCTGTCAAAACAAAGGTAATTGTCAATGGATGGGCAATTGGTAGAGATCCAAAGTACTGGACTGAACCTGAGAGCTTTCATCCAGAGAGATTCCTTGATAGCTCAATTGATTTCAGGGGAACAAACTTTGAGTATATCCCATTTGGTGCTGGAAGAAGAATATGTCCCGGCATAACATATGGTCTGGCCAATGTGGAGCTCCCACTTGCAATGTTATTATACCATTTTGATTGGAAACTCCCAAATGGAATGAAACATGAAGACCTGGACATGACTGAGGCCTTTGGCATTACAGTCCGTAGAAAAGAAGATCTGCGCCTTATACCCATCCCATATCATCCTCCACCAACTGAACAAACCCAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

512

Amino Acids

58.28

Weight (kDa)

9.22

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 38 - 488 3.1e-109 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1024
AccI GTMKAC 2 cut(s) 628, 945
AciI CCGC 1 cut(s) 1137
AclWI GGATC 2 cut(s) 172, 1211
AcoI YGGCCR 2 cut(s) 195, 1356
AcsI RAATTY 4 cut(s) 405, 534, 601, 836
AfaI GTAC 3 cut(s) 63, 828, 1226
AfiI CCNNNNNNNGG 2 cut(s) 140, 141
AflII CTTAAG 1 cut(s) 424
AgsI TTSAA 4 cut(s) 105, 443, 716, 1021
AjnI CCWGG 4 cut(s) 115, 506, 816, 1434
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 9 cut(s) 96, 130, 157, 421, 917, 941, 1245, 1272, 1369
AluI AGCT 9 cut(s) 96, 130, 157, 421, 917, 941, 1245, 1272, 1369
Alw21I GWGCWC 2 cut(s) 423, 1371
Alw26I GTCTC 3 cut(s) 385, 920, 1082
AlwI GGATC 2 cut(s) 172, 1211
AoxI GGCC 6 cut(s) 195, 314, 704, 856, 1356, 1449
ApeKI GCWGC 2 cut(s) 329, 569
ApoI RAATTY 4 cut(s) 405, 534, 601, 836
ArsI GACNNNNNNTTYG 4 cut(s) 287, 319, 494, 526
AspLEI GCGC 1 cut(s) 1488
AspS9I GGNCC 5 cut(s) 4, 119, 209, 315, 857
AsuC2I CCSGG 1 cut(s) 1338
AsuHPI GGTGA 4 cut(s) 292, 392, 504, 1018
AsuII TTCGAA 1 cut(s) 500
AvaII GGWCC 3 cut(s) 4, 119, 209
AxyI CCTNAGG 1 cut(s) 224
BaeGI GKGCMC 1 cut(s) 997
BalI TGGCCA 2 cut(s) 197, 1358
BanII GRGCYC 2 cut(s) 423, 1371
BauI CACGAG 2 cut(s) 564, 842
BbsI GAAGAC 2 cut(s) 819, 1437
Bbv12I GWGCWC 2 cut(s) 423, 1371
BbvI GCAGC 2 cut(s) 316, 581
BccI CCATC 7 cut(s) 183, 327, 344, 848, 1114, 1194, 1505
BcgI CGANNNNNNTGC 2 cut(s) 390, 424
BciT130I CCWGG 4 cut(s) 117, 508, 818, 1436
BclI TGATCA 1 cut(s) 555
BcnI CCSGG 1 cut(s) 1338
BcoDI GTCTC 3 cut(s) 385, 920, 1082
BfaI CTAG 1 cut(s) 416
BfmI CTRYAG 1 cut(s) 942
BfrI CTTAAG 1 cut(s) 424
BfuAI ACCTGC 1 cut(s) 1024
BglII AGATCT 1 cut(s) 1480
BisI GCNGC 2 cut(s) 330, 570
BlsI GCNGC 2 cut(s) 331, 571
BmcAI AGTACT 1 cut(s) 1226
Bme1390I CCNGG 5 cut(s) 117, 508, 818, 1338, 1436
Bme18I GGWCC 3 cut(s) 4, 119, 209
BmgT120I GGNCC 5 cut(s) 4, 119, 209, 315, 857
BmiI GGNNCC 2 cut(s) 211, 317
BmrFI CCNGG 5 cut(s) 117, 508, 818, 1338, 1436
BmrI ACTGGG 2 cut(s) 705, 958
BmsI GCATC 3 cut(s) 317, 462, 1059
BmuI ACTGGG 2 cut(s) 705, 958
BpiI GAAGAC 2 cut(s) 819, 1437
BpmI CTGGAG 2 cut(s) 82, 409
Bpu14I TTCGAA 1 cut(s) 500
BpuMI CCSGG 1 cut(s) 1338
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 141
Bse1I ACTGG 7 cut(s) 10, 99, 392, 700, 750, 953, 1232
Bse21I CCTNAGG 1 cut(s) 224
Bse3DI GCAATG 2 cut(s) 960, 1386
BseBI CCWGG 4 cut(s) 117, 508, 818, 1436
BseGI GGATG 7 cut(s) 147, 705, 1006, 1205, 1249, 1497, 1507
BseLI CCNNNNNNNGG 2 cut(s) 140, 141
BseMI GCAATG 2 cut(s) 960, 1386
BseMII CTCAG 5 cut(s) 786, 852, 1108, 1230, 1437
BseNI ACTGG 7 cut(s) 10, 99, 392, 700, 750, 953, 1232
BseRI GAGGAG 1 cut(s) 654
BseSI GKGCMC 1 cut(s) 997
BseXI GCAGC 2 cut(s) 316, 581
BshFI GGCC 6 cut(s) 197, 316, 706, 858, 1358, 1451
BsiHKAI GWGCWC 2 cut(s) 423, 1371
BsiSI CCGG 1 cut(s) 1338
BslFI GGGAC 1 cut(s) 1320
BslI CCNNNNNNNGG 2 cut(s) 140, 141
BsmAI GTCTC 3 cut(s) 385, 920, 1082
BsmFI GGGAC 1 cut(s) 1320
BsmI GAATGC 1 cut(s) 1139
BsnI GGCC 6 cut(s) 197, 316, 706, 858, 1358, 1451
Bsp119I TTCGAA 1 cut(s) 500
Bsp1286I GDGCHC 3 cut(s) 423, 997, 1371
Bsp143I GATC 5 cut(s) 164, 555, 649, 1216, 1480
BspACI CCGC 1 cut(s) 1137
BspANI GGCC 6 cut(s) 197, 316, 706, 858, 1358, 1451
BspCNI CTCAG 5 cut(s) 787, 853, 1107, 1231, 1438
BspHI TCATGA 1 cut(s) 595
BspLI GGNNCC 2 cut(s) 211, 317
BspMI ACCTGC 1 cut(s) 1024
BspPI GGATC 2 cut(s) 172, 1211
BspT104I TTCGAA 1 cut(s) 500
BspTI CTTAAG 1 cut(s) 424
BsrDI GCAATG 2 cut(s) 960, 1386
BsrI ACTGG 7 cut(s) 10, 99, 392, 700, 750, 953, 1232
BssMI GATC 5 cut(s) 164, 555, 649, 1216, 1480
BssNAI GTATAC 1 cut(s) 629
BssSI CACGAG 2 cut(s) 564, 842
Bst1107I GTATAC 1 cut(s) 629
Bst2BI CACGAG 2 cut(s) 564, 842
Bst2UI CCWGG 4 cut(s) 117, 508, 818, 1436
Bst4CI ACNGT 3 cut(s) 182, 247, 1465
Bst6I CTCTTC 3 cut(s) 22, 73, 462
BstAFI CTTAAG 1 cut(s) 424
BstAPI GCANNNNNTGC 1 cut(s) 269
BstBI TTCGAA 1 cut(s) 500
BstC8I GCNNGC 2 cut(s) 128, 159
BstDEI CTNAG 6 cut(s) 224, 795, 861, 1094, 1239, 1446
BstEII GGTNACC 1 cut(s) 510
BstF5I GGATG 7 cut(s) 147, 705, 1006, 1205, 1249, 1497, 1507
BstHHI GCGC 1 cut(s) 1488
BstKTI GATC 5 cut(s) 167, 558, 652, 1219, 1483
BstMAI GTCTC 3 cut(s) 385, 920, 1082
BstMBI GATC 5 cut(s) 164, 555, 649, 1216, 1480
BstMWI GCNNNNNNNGC 4 cut(s) 226, 269, 305, 503
BstNI CCWGG 4 cut(s) 117, 508, 818, 1436
BstPI GGTNACC 1 cut(s) 510
BstSCI CCNGG 5 cut(s) 115, 506, 816, 1336, 1434
BstSFI CTRYAG 1 cut(s) 942
BstSLI GKGCMC 1 cut(s) 997
BstV1I GCAGC 2 cut(s) 316, 581
BstV2I GAAGAC 2 cut(s) 819, 1437
BstX2I RGATCY 3 cut(s) 164, 1216, 1480
BstXI CCANNNNNNTGG 2 cut(s) 161, 1227
BstYI RGATCY 3 cut(s) 164, 1216, 1480
BstZ17I GTATAC 1 cut(s) 629
Bsu36I CCTNAGG 1 cut(s) 224
BsuRI GGCC 6 cut(s) 197, 316, 706, 858, 1358, 1451
BtsCI GGATG 7 cut(s) 147, 705, 1006, 1205, 1249, 1497, 1507
BveI ACCTGC 1 cut(s) 1024
Cac8I GCNNGC 2 cut(s) 128, 159
CciI TCATGA 1 cut(s) 595
CfoI GCGC 1 cut(s) 1488
Cfr13I GGNCC 5 cut(s) 4, 119, 209, 315, 857
CseI GACGC 1 cut(s) 305
CsiI ACCWGGT 1 cut(s) 816
Csp6I GTAC 3 cut(s) 62, 827, 1225
CspCI CAANNNNNGTGG 4 cut(s) 232, 267, 343, 378
CviAII CATG 4 cut(s) 26, 596, 1427, 1441
CviQI GTAC 3 cut(s) 62, 827, 1225
DdeI CTNAG 6 cut(s) 224, 795, 861, 1094, 1239, 1446
DpnI GATC 5 cut(s) 166, 557, 651, 1218, 1482
DpnII GATC 5 cut(s) 164, 555, 649, 1216, 1480
DraI TTTAAA 1 cut(s) 1071
EaeI YGGCCR 2 cut(s) 195, 1356
Eam1104I CTCTTC 3 cut(s) 22, 73, 462
EarI CTCTTC 3 cut(s) 22, 73, 462
Ecl136II GAGCTC 2 cut(s) 421, 1369
Eco147I AGGCCT 2 cut(s) 706, 1451
Eco24I GRGCYC 2 cut(s) 423, 1371
Eco47I GGWCC 3 cut(s) 4, 119, 209
Eco53kI GAGCTC 2 cut(s) 421, 1369
Eco81I CCTNAGG 1 cut(s) 224
Eco91I GGTNACC 1 cut(s) 510
EcoICRI GAGCTC 2 cut(s) 421, 1369
EcoO109I RGGNCCY 1 cut(s) 315
EcoO65I GGTNACC 1 cut(s) 510
EcoRII CCWGG 4 cut(s) 115, 506, 816, 1434
EcoT38I GRGCYC 2 cut(s) 423, 1371
FaeI CATG 4 cut(s) 29, 599, 1430, 1444
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FaqI GGGAC 1 cut(s) 1320
FatI CATG 4 cut(s) 25, 595, 1426, 1440
FauNDI CATATG 2 cut(s) 687, 1348
FbaI TGATCA 1 cut(s) 555
FblI GTMKAC 2 cut(s) 628, 945
Fnu4HI GCNGC 2 cut(s) 330, 570
FokI GGATG 7 cut(s) 134, 712, 1013, 1212, 1236, 1484, 1494
FriOI GRGCYC 2 cut(s) 423, 1371
Fsp4HI GCNGC 2 cut(s) 330, 570
FspBI CTAG 1 cut(s) 416
GlaI GCGC 1 cut(s) 1487
GluI GCNGC 2 cut(s) 330, 570
GsuI CTGGAG 2 cut(s) 82, 409
HaeIII GGCC 6 cut(s) 197, 316, 706, 858, 1358, 1451
HapII CCGG 1 cut(s) 1338
HgaI GACGC 1 cut(s) 305
HhaI GCGC 1 cut(s) 1488
Hin1II CATG 4 cut(s) 29, 599, 1430, 1444
Hin6I GCGC 1 cut(s) 1486
HinP1I GCGC 1 cut(s) 1486
HinfI GANTC 2 cut(s) 478, 1260
HpaII CCGG 1 cut(s) 1338
HphI GGTGA 4 cut(s) 292, 392, 504, 1018
Hpy166II GTNNAC 2 cut(s) 629, 946
Hpy188I TCNGA 4 cut(s) 796, 914, 961, 1097
Hpy188III TCNNGA 5 cut(s) 293, 564, 596, 842, 1253
Hpy8I GTNNAC 2 cut(s) 629, 946
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 4 cut(s) 31, 613, 617, 678
HpyCH4III ACNGT 3 cut(s) 182, 247, 1465
HpyCH4V TGCA 9 cut(s) 220, 308, 332, 371, 411, 656, 724, 1102, 1379
HpyF10VI GCNNNNNNNGC 4 cut(s) 226, 269, 305, 503
HpyF3I CTNAG 6 cut(s) 224, 795, 861, 1094, 1239, 1446
Hsp92II CATG 4 cut(s) 29, 599, 1430, 1444
HspAI GCGC 1 cut(s) 1486
Ksp22I TGATCA 1 cut(s) 555
Kzo9I GATC 5 cut(s) 164, 555, 649, 1216, 1480
LmnI GCTCC 4 cut(s) 101, 914, 1366, 1374
Lsp1109I GCAGC 2 cut(s) 316, 581
LweI GCATC 3 cut(s) 317, 462, 1059
MabI ACCWGGT 1 cut(s) 816
MaeI CTAG 1 cut(s) 416
MaeIII GTNAC 2 cut(s) 380, 510
MalI GATC 5 cut(s) 166, 557, 651, 1218, 1482
MboI GATC 5 cut(s) 164, 555, 649, 1216, 1480
MboII GAAGA 8 cut(s) 9, 90, 479, 824, 1335, 1338, 1442, 1490
MfeI CAATTG 3 cut(s) 632, 1206, 1275
MflI RGATCY 3 cut(s) 164, 1216, 1480
MhlI GDGCHC 3 cut(s) 423, 997, 1371
MlsI TGGCCA 2 cut(s) 197, 1358
MluNI TGGCCA 2 cut(s) 197, 1358
Mox20I TGGCCA 2 cut(s) 197, 1358
MscI TGGCCA 2 cut(s) 197, 1358
MseI TTAA 7 cut(s) 425, 833, 867, 969, 1070, 1083, 1121
Msp20I TGGCCA 2 cut(s) 197, 1358
MspA1I CMGCKG 1 cut(s) 941
MspCI CTTAAG 1 cut(s) 424
MspI CCGG 1 cut(s) 1338
MspR9I CCNGG 5 cut(s) 117, 508, 818, 1338, 1436
MunI CAATTG 3 cut(s) 632, 1206, 1275
Mva1269I GAATGC 1 cut(s) 1139
MvaI CCWGG 4 cut(s) 117, 508, 818, 1436
MwoI GCNNNNNNNGC 4 cut(s) 226, 269, 305, 503
NciI CCSGG 1 cut(s) 1338
NdeI CATATG 2 cut(s) 687, 1348
NdeII GATC 5 cut(s) 164, 555, 649, 1216, 1480
NlaIII CATG 4 cut(s) 29, 599, 1430, 1444
NlaIV GGNNCC 2 cut(s) 211, 317
NmuCI GTSAC 2 cut(s) 380, 510
NspV TTCGAA 1 cut(s) 500
PagI TCATGA 1 cut(s) 595
PceI AGGCCT 2 cut(s) 706, 1451
PctI GAATGC 1 cut(s) 1139
PfeI GAWTC 2 cut(s) 478, 1260
PkrI GCNGC 2 cut(s) 331, 571
Psp124BI GAGCTC 2 cut(s) 423, 1371
Psp6I CCWGG 4 cut(s) 115, 506, 816, 1434
PspEI GGTNACC 1 cut(s) 510
PspGI CCWGG 4 cut(s) 115, 506, 816, 1434
PspN4I GGNNCC 2 cut(s) 211, 317
PspPI GGNCC 5 cut(s) 4, 119, 209, 315, 857
PsuI RGATCY 3 cut(s) 164, 1216, 1480
PvuII CAGCTG 1 cut(s) 941
RsaI GTAC 3 cut(s) 63, 828, 1226
RsaNI GTAC 3 cut(s) 62, 827, 1225
SacI GAGCTC 2 cut(s) 423, 1371
SaqAI TTAA 7 cut(s) 425, 833, 867, 969, 1070, 1083, 1121
SatI GCNGC 2 cut(s) 330, 570
Sau3AI GATC 5 cut(s) 164, 555, 649, 1216, 1480
Sau96I GGNCC 5 cut(s) 4, 119, 209, 315, 857
ScaI AGTACT 1 cut(s) 1226
ScrFI CCNGG 5 cut(s) 117, 508, 818, 1338, 1436
SduI GDGCHC 3 cut(s) 423, 997, 1371
SexAI ACCWGGT 1 cut(s) 816
SfaNI GCATC 3 cut(s) 317, 462, 1059
SfcI CTRYAG 1 cut(s) 942
SfuI TTCGAA 1 cut(s) 500
SinI GGWCC 3 cut(s) 4, 119, 209
SmlI CTYRAG 1 cut(s) 424
SmoI CTYRAG 1 cut(s) 424
SseBI AGGCCT 2 cut(s) 706, 1451
SsiI CCGC 1 cut(s) 1137
SspI AATATT 1 cut(s) 1067
SspMI CTAG 1 cut(s) 416
SstI GAGCTC 2 cut(s) 423, 1371
StuI AGGCCT 2 cut(s) 706, 1451
StyD4I CCNGG 5 cut(s) 115, 506, 816, 1336, 1434
TaaI ACNGT 3 cut(s) 182, 247, 1465
TaqI TCGA 2 cut(s) 451, 500
TatI WGTACW 2 cut(s) 826, 1224
TfiI GAWTC 2 cut(s) 478, 1260
Tru1I TTAA 7 cut(s) 425, 833, 867, 969, 1070, 1083, 1121
Tru9I TTAA 7 cut(s) 425, 833, 867, 969, 1070, 1083, 1121
TseFI GTSAC 2 cut(s) 380, 510
TseI GCWGC 2 cut(s) 329, 569
Tsp45I GTSAC 2 cut(s) 380, 510
TspGWI ACGGA 1 cut(s) 1457
Vha464I CTTAAG 1 cut(s) 424
VpaK11BI GGWCC 3 cut(s) 4, 119, 209
XapI RAATTY 4 cut(s) 405, 534, 601, 836
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XmiI GTMKAC 2 cut(s) 628, 945
XspI CTAG 1 cut(s) 416
ZrmI AGTACT 1 cut(s) 1226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.