RLG00000035134

Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004109
Physical Location & Seq
Reverse (-)
61384286 .. 61385866
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035134

Sequence Viewer

Length: 984 bp
ATGGACGGGATGGGTGCATCTGGAAACCACGATCTAGGAGGTCACAGTATCATTAATCACTTTGAGTTGCAAGACTTCATAGATGATGCAAACTTCGACCAGTTCATCAATCTTATTCGCGGCGAAAATGAGGACCCAGCAGCAGCTCATTTTGATTGCGACCTTATCAGTGGCTCGTGCTTTGTTGATAACCAGTTTAGTCCAACTACTCCGGGTAGTGGTTTCTTTGGTTTAGATCATAATTCTACTGTCGTATCCGATCCAGCTCCTTTTCTTACTACATTACCACATTTTGATGGAGAAATGAACGATATTGGGGAAGAAGATAATGACGCAGACTCATGTGGAACAACGACAACAACCACCACAAATACCACAGCCACGACGACAAAGAAGCCAAAGGTTGATCGGTCGAGAACCTTGGTTTCGGAGAGGAAGAGGAGGGGAAGGATGAAAGAAAAACTGTATGCATTGCGGTCCTTGGTTCCTAACATCACTAAGATGGATAAAGCCTCCATCGTTGGAGATGCTGTATCATATGTACAAGATCTGCAAAAACACGCTAAGAAGCTGGAAGCGGAGATTTCAGGTCTTGAAGCATCCATAGAAGGATCAGGGGTAAAGCAAGCAGTATCAACCCAAAATCCAACCAAGAATAAATTAGTTGCAGACAAGTACCATTTAACTCCCACGGAAATCATTCAGATAGATGTATCCCAAGTGGAGGAGAAAAGCTTTTATGTGAAAGTGGGATGCAACAAAGGAGTAGGCGTGGCCACAGCACTTTACAAGGCTATTGAATCCCTTACAAGCTTCAATGTTCTGAGTTCAAACTTGAACACGGTTAATTCTGGGAGATTCGAAATAACACTCACTTTGAATGTGAAAGAAAGCGAGCAGGAGATCATCAACTTACCAAACCTGAAACTTTGGGTGACTGGAGCTTTCCTGAACCAAGGTTTTGAGTTAGCTACACGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

328

Amino Acids

35.72

Weight (kDa)

5.09

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 141 - 185 3.8e-10 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 120
AciI CCGC 3 cut(s) 120, 475, 578
AclWI GGATC 2 cut(s) 254, 619
AcoI YGGCCR 1 cut(s) 774
AfaI GTAC 2 cut(s) 543, 677
AfiI CCNNNNNNNGG 2 cut(s) 218, 724
AgsI TTSAA 6 cut(s) 596, 800, 817, 831, 838, 880
AluBI AGCT 7 cut(s) 146, 266, 571, 735, 813, 944, 971
AluI AGCT 7 cut(s) 146, 266, 571, 735, 813, 944, 971
AlwI GGATC 2 cut(s) 254, 619
AoxI GGCC 1 cut(s) 774
ApeKI GCWGC 2 cut(s) 140, 143
AseI ATTAAT 1 cut(s) 54
Asp700I GAANNNNTTC 1 cut(s) 699
AspS9I GGNCC 2 cut(s) 133, 477
AsuC2I CCSGG 1 cut(s) 213
AsuHPI GGTGA 1 cut(s) 946
AsuII TTCGAA 1 cut(s) 861
AvaII GGWCC 2 cut(s) 133, 477
BaeI ACNNNNGTAYC 2 cut(s) 237, 270
BalI TGGCCA 1 cut(s) 776
BauI CACGAG 1 cut(s) 175
BbvI GCAGC 2 cut(s) 152, 155
BccI CCATC 4 cut(s) 4, 290, 496, 524
BciVI GTATCC 2 cut(s) 265, 724
BcnI CCSGG 1 cut(s) 213
BfaI CTAG 1 cut(s) 35
BfuI GTATCC 2 cut(s) 265, 724
BglII AGATCT 1 cut(s) 547
BisI GCNGC 3 cut(s) 121, 141, 144
BlsI GCNGC 3 cut(s) 122, 142, 145
Bme1390I CCNGG 1 cut(s) 213
Bme18I GGWCC 2 cut(s) 133, 477
BmgT120I GGNCC 2 cut(s) 133, 477
BmiI GGNNCC 2 cut(s) 135, 486
BmrFI CCNGG 1 cut(s) 213
BmsI GCATC 5 cut(s) 26, 76, 517, 608, 743
BpmI CTGGAG 1 cut(s) 960
Bpu14I TTCGAA 1 cut(s) 861
BpuMI CCSGG 1 cut(s) 213
BsaJI CCNNGG 4 cut(s) 420, 480, 690, 955
BsaXI ACNNNNNCTCC 4 cut(s) 516, 546, 756, 786
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 724
Bse1I ACTGG 3 cut(s) 100, 193, 943
Bse3DI GCAATG 1 cut(s) 470
BseDI CCNNGG 4 cut(s) 420, 480, 690, 955
BseGI GGATG 4 cut(s) 15, 456, 599, 758
BseLI CCNNNNNNNGG 2 cut(s) 218, 724
BseMI GCAATG 1 cut(s) 470
BseMII CTCAG 1 cut(s) 815
BseNI ACTGG 3 cut(s) 100, 193, 943
BseRI GAGGAG 2 cut(s) 454, 740
BseXI GCAGC 2 cut(s) 152, 155
BseYI CCCAGC 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 120
Bsh1285I CGRYCG 1 cut(s) 413
BshFI GGCC 1 cut(s) 776
BsiEI CGRYCG 1 cut(s) 413
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 2 cut(s) 218, 724
BsnI GGCC 1 cut(s) 776
Bsp119I TTCGAA 1 cut(s) 861
Bsp1407I TGTACA 1 cut(s) 541
Bsp143I GATC 7 cut(s) 31, 235, 259, 406, 547, 611, 903
BspACI CCGC 3 cut(s) 120, 475, 578
BspANI GGCC 1 cut(s) 776
BspCNI CTCAG 1 cut(s) 816
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 135, 486
BspPI GGATC 2 cut(s) 254, 619
BspT104I TTCGAA 1 cut(s) 861
BsrDI GCAATG 1 cut(s) 470
BsrGI TGTACA 1 cut(s) 541
BsrI ACTGG 3 cut(s) 100, 193, 943
BssECI CCNNGG 4 cut(s) 420, 480, 690, 955
BssMI GATC 7 cut(s) 31, 235, 259, 406, 547, 611, 903
BssSI CACGAG 1 cut(s) 175
BssT1I CCWWGG 3 cut(s) 420, 480, 955
Bst2BI CACGAG 1 cut(s) 175
Bst4CI ACNGT 4 cut(s) 47, 250, 465, 844
Bst6I CTCTTC 1 cut(s) 431
BstAUI TGTACA 1 cut(s) 541
BstBI TTCGAA 1 cut(s) 861
BstC8I GCNNGC 2 cut(s) 627, 896
BstDEI CTNAG 3 cut(s) 498, 564, 824
BstDSI CCRYGG 1 cut(s) 690
BstF5I GGATG 4 cut(s) 15, 456, 599, 758
BstFNI CGCG 1 cut(s) 120
BstKTI GATC 7 cut(s) 34, 238, 262, 409, 550, 614, 906
BstMBI GATC 7 cut(s) 31, 235, 259, 406, 547, 611, 903
BstMCI CGRYCG 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 211
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 152, 155
BstX2I RGATCY 1 cut(s) 547
BstYI RGATCY 1 cut(s) 547
BsuI GTATCC 2 cut(s) 265, 724
BsuRI GGCC 1 cut(s) 776
BtgI CCRYGG 1 cut(s) 690
BtsCI GGATG 4 cut(s) 15, 456, 599, 758
BtsIMutI CAGTG 1 cut(s) 175
Cac8I GCNNGC 2 cut(s) 627, 896
Cfr13I GGNCC 2 cut(s) 133, 477
CseI GACGC 1 cut(s) 341
Csp6I GTAC 2 cut(s) 542, 676
CviAII CATG 1 cut(s) 342
CviQI GTAC 2 cut(s) 542, 676
DdeI CTNAG 3 cut(s) 498, 564, 824
DpnI GATC 7 cut(s) 33, 237, 261, 408, 549, 613, 905
DpnII GATC 7 cut(s) 31, 235, 259, 406, 547, 611, 903
EaeI YGGCCR 1 cut(s) 774
Eam1104I CTCTTC 1 cut(s) 431
EarI CTCTTC 1 cut(s) 431
Eco130I CCWWGG 3 cut(s) 420, 480, 955
Eco47I GGWCC 2 cut(s) 133, 477
EcoO109I RGGNCCY 1 cut(s) 133
EcoT14I CCWWGG 3 cut(s) 420, 480, 955
EcoT22I ATGCAT 1 cut(s) 472
ErhI CCWWGG 3 cut(s) 420, 480, 955
FaeI CATG 1 cut(s) 345
FaiI YATR 8 cut(s) 80, 240, 343, 468, 538, 540, 605, 741
FatI CATG 1 cut(s) 341
FauNDI CATATG 1 cut(s) 538
Fnu4HI GCNGC 3 cut(s) 121, 141, 144
FokI GGATG 4 cut(s) 22, 463, 586, 765
Fsp4HI GCNGC 3 cut(s) 121, 141, 144
FspBI CTAG 1 cut(s) 35
GluI GCNGC 3 cut(s) 121, 141, 144
GsaI CCCAGC 1 cut(s) 140
GsuI CTGGAG 1 cut(s) 960
HaeIII GGCC 1 cut(s) 776
HapII CCGG 1 cut(s) 212
HgaI GACGC 1 cut(s) 341
Hin1II CATG 1 cut(s) 345
HindIII AAGCTT 2 cut(s) 733, 811
HinfI GANTC 3 cut(s) 338, 800, 858
HpaII CCGG 1 cut(s) 212
HphI GGTGA 1 cut(s) 946
Hpy188I TCNGA 4 cut(s) 259, 430, 705, 825
Hpy188III TCNNGA 4 cut(s) 21, 414, 593, 949
Hpy99I CGWCG 1 cut(s) 388
HpyAV CCTTC 2 cut(s) 441, 602
HpyCH4III ACNGT 4 cut(s) 47, 250, 465, 844
HpyCH4V TGCA 7 cut(s) 17, 70, 89, 470, 553, 668, 756
HpyF3I CTNAG 3 cut(s) 498, 564, 824
Hsp92II CATG 1 cut(s) 345
Kzo9I GATC 7 cut(s) 31, 235, 259, 406, 547, 611, 903
LmnI GCTCC 2 cut(s) 271, 941
Lsp1109I GCAGC 2 cut(s) 152, 155
LweI GCATC 5 cut(s) 26, 76, 517, 608, 743
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 2 cut(s) 41, 934
MalI GATC 7 cut(s) 33, 237, 261, 408, 549, 613, 905
MboI GATC 7 cut(s) 31, 235, 259, 406, 547, 611, 903
MboII GAAGA 3 cut(s) 332, 335, 448
MflI RGATCY 1 cut(s) 547
MlsI TGGCCA 1 cut(s) 776
MluCI AATT 3 cut(s) 241, 659, 847
MluNI TGGCCA 1 cut(s) 776
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 3 cut(s) 227, 502, 671
MnlI CCTC 7 cut(s) 32, 124, 426, 432, 435, 523, 718
Mox20I TGGCCA 1 cut(s) 776
Mph1103I ATGCAT 1 cut(s) 472
MroXI GAANNNNTTC 1 cut(s) 699
MscI TGGCCA 1 cut(s) 776
MseI TTAA 3 cut(s) 54, 683, 846
MslI CAYNNNNRTG 2 cut(s) 294, 500
Msp20I TGGCCA 1 cut(s) 776
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 213
MvnI CGCG 1 cut(s) 120
NciI CCSGG 1 cut(s) 213
NdeI CATATG 1 cut(s) 538
NdeII GATC 7 cut(s) 31, 235, 259, 406, 547, 611, 903
NlaIII CATG 1 cut(s) 345
NlaIV GGNNCC 2 cut(s) 135, 486
NmuCI GTSAC 2 cut(s) 41, 934
NsiI ATGCAT 1 cut(s) 472
NspV TTCGAA 1 cut(s) 861
PdmI GAANNNNTTC 1 cut(s) 699
PfeI GAWTC 2 cut(s) 800, 858
PkrI GCNGC 3 cut(s) 122, 142, 145
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
PpuMI RGGWCCY 1 cut(s) 133
PshBI ATTAAT 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 133
PspFI CCCAGC 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 135, 486
PspPI GGNCC 2 cut(s) 133, 477
PspPPI RGGWCCY 1 cut(s) 133
PsuI RGATCY 1 cut(s) 547
RsaI GTAC 2 cut(s) 543, 677
RsaNI GTAC 2 cut(s) 542, 676
RseI CAYNNNNRTG 2 cut(s) 294, 500
SaqAI TTAA 3 cut(s) 54, 683, 846
SatI GCNGC 3 cut(s) 121, 141, 144
Sau3AI GATC 7 cut(s) 31, 235, 259, 406, 547, 611, 903
Sau96I GGNCC 2 cut(s) 133, 477
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 1 cut(s) 213
SfaNI GCATC 5 cut(s) 26, 76, 517, 608, 743
SfuI TTCGAA 1 cut(s) 861
SinI GGWCC 2 cut(s) 133, 477
SmiMI CAYNNNNRTG 2 cut(s) 294, 500
Sse9I AATT 3 cut(s) 241, 659, 847
SsiI CCGC 3 cut(s) 120, 475, 578
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 211
StyI CCWWGG 3 cut(s) 420, 480, 955
TaaI ACNGT 4 cut(s) 47, 250, 465, 844
TaqI TCGA 3 cut(s) 96, 413, 861
TaqII GACCGA 1 cut(s) 399
TasI AATT 3 cut(s) 241, 659, 847
TatI WGTACW 1 cut(s) 541
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 2 cut(s) 800, 858
Tru1I TTAA 3 cut(s) 54, 683, 846
Tru9I TTAA 3 cut(s) 54, 683, 846
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 2 cut(s) 41, 934
TseI GCWGC 2 cut(s) 140, 143
Tsp45I GTSAC 2 cut(s) 41, 934
TspDTI ATGAA 4 cut(s) 67, 94, 320, 467
TspGWI ACGGA 1 cut(s) 707
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 2 cut(s) 133, 477
VspI ATTAAT 1 cut(s) 54
XmnI GAANNNNTTC 1 cut(s) 699
XspI CTAG 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.