Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001460.1

Orthogroup ID

OG0004109

Physical Location & Seq

Genomic Coordinates Forward (+)

95975 .. 97523

Gene Structure 1549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001460.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

atggatgggatgggtgcatccggaaaccatgatcttagaggtcacagcgtcattaatgactttgagttacaagatttcgtagatgatgcaaacttcgaccagttcatcgatcttattcgtggagaaaatgaagatccagcagctcagtttaatcttgaccttacctgcagcgggtcattctttgataaccaactttgtccaactactgatacggtcagtttttttggttttgatcataatcttacaatcctatgcgatccacctccctttcttactacattaccgagttttggtggagaaatgaacgacattggcgaagaagataatgatgggggagattcgtgtgggacaacgacaacgacaacaacaaccaccacaaccacagccacaacgacgaagaagccaaaggttgatcggtcgagaaccttggtttcggaaagaaggagaaggggaaggatgaaggaaaaactctatgcattgcgttccttggttcctaacatcactaagatggataaggcgtccattattggagatgctgtattgtatgtgcaagacctggaaaagcaggctaagaagctgagagctgagattttgggacttgaagcatccttagaaggatcagaggaaaatcaaggatcaccccaaaatccaaccaagaataaattagttacagacaattaccatttaattcccaagggaaccattcagatagatgtgtctcaagtaaaggagaaaggctttcatgtgaaagtgggatgcaacagaggagtcggggtggccacagcactttacaaggccatagaatcccttacaagcttcactgttcagagttcaaacttgaacatggttaattccaagagattcgaaataacactcgccttgaacgtaaaagagtgcgagcacgagatcatgaacttaccaaatttgaaactttgggtgactggggcttttctgaaccagggttttgaattagctacaatcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

328

Amino Acids

36.17

Weight (kDa)

5.03

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28160 AT2G28160
fragaria_vesca	FvH4_3g30650 FvH4_3g30660 FvH4_3g30660
malus_domestica	MD03G1127500.v1.1 MD03G1127600.v1.1 MD03G1129100.v1.1
prunus_persica	Prupe.6G112500_v2.0.a1 Prupe.6G112600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056871 RchiOBHm_Chr5g0056881
rosa_laevigata	RLG00000035133 RLG00000035134
rosa_multiflora	Rmu_sc0001460.1_g000011 Rmu_sc0001460.1_g000020
rosa_roxburghii	Rroxscaffold_1G00023420 Rroxscaffold_1G00023430
rosa_rugosa	Rorug05G0302900 Rorug05G0303000 Rorug05G0303200 Rorug05G0303300
rosa_samantha	Rh5AG373100 Rh5AG373300 Rh5BG384200 Rh5BG384300 Rh5CG407300 Rh5CG407500 Rh5DG397300 Rh5DG397600
rosa_wichuraiana	Rw5G034980 Rw5G035090 Rw5G035100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	173
AccIII	TCCGGA	1 cut(s)	20
AciI	CCGC	1 cut(s)	171
AclWI	GGATC	4 cut(s)	128, 251, 625, 643
AcoI	YGGCCR	1 cut(s)	777
AcsI	RAATTY	1 cut(s)	922
AcyI	GRCGYC	1 cut(s)	518
AfiI	CCNNNNNNNGG	2 cut(s)	171, 290
AgsI	TTSAA	6 cut(s)	602, 834, 841, 883, 928, 968
AjnI	CCWGG	2 cut(s)	555, 957
AluBI	AGCT	5 cut(s)	143, 577, 584, 816, 974
AluI	AGCT	5 cut(s)	143, 577, 584, 816, 974
Alw21I	GWGCWC	1 cut(s)	903
Alw26I	GTCTC	1 cut(s)	723
AlwI	GGATC	4 cut(s)	128, 251, 625, 643
Aor13HI	TCCGGA	1 cut(s)	20
AoxI	GGCC	2 cut(s)	777, 795
ApeKI	GCWGC	2 cut(s)	140, 168
ApoI	RAATTY	1 cut(s)	922
AseI	ATTAAT	1 cut(s)	54
AsuHPI	GGTGA	2 cut(s)	630, 949
AsuII	TTCGAA	1 cut(s)	864
BalI	TGGCCA	1 cut(s)	779
BauI	CACGAG	1 cut(s)	902
Bbv12I	GWGCWC	1 cut(s)	903
BbvI	GCAGC	2 cut(s)	152, 180
BccI	CCATC	3 cut(s)	4, 323, 502
BciT130I	CCWGG	2 cut(s)	557, 959
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	723
BfmI	CTRYAG	1 cut(s)	166
BfuAI	ACCTGC	1 cut(s)	173
BisI	GCNGC	2 cut(s)	141, 169
BlsI	GCNGC	2 cut(s)	142, 170
Bme1390I	CCNGG	2 cut(s)	557, 959
BmiI	GGNNCC	2 cut(s)	492, 700
BmrFI	CCNGG	2 cut(s)	557, 959
BmrI	ACTGGG	1 cut(s)	951
BmsI	GCATC	5 cut(s)	26, 76, 523, 614, 746
BmuI	ACTGGG	1 cut(s)	951
Bpu14I	TTCGAA	1 cut(s)	864
BpuEI	CTTGAG	1 cut(s)	705
Bsa29I	ATCGAT	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	518
BsaJI	CCNNGG	4 cut(s)	426, 486, 693, 958
BsaWI	WCCGGW	1 cut(s)	20
BsaXI	ACNNNNNCTCC	4 cut(s)	522, 552, 759, 789
Bsc4I	CCNNNNNNNGG	2 cut(s)	171, 290
Bse1I	ACTGG	2 cut(s)	100, 946
Bse3DI	GCAATG	1 cut(s)	476
Bse8I	GATNNNNATC	1 cut(s)	237
BseAI	TCCGGA	1 cut(s)	20
BseBI	CCWGG	2 cut(s)	557, 959
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	4 cut(s)	426, 486, 693, 958
BseGI	GGATG	6 cut(s)	10, 15, 17, 462, 605, 761
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	2 cut(s)	171, 290
BseMI	GCAATG	1 cut(s)	476
BseMII	CTCAG	3 cut(s)	158, 569, 576
BseNI	ACTGG	2 cut(s)	100, 946
BseRI	GAGGAG	1 cut(s)	780
BseXI	GCAGC	2 cut(s)	152, 180
Bsh1285I	CGRYCG	1 cut(s)	419
BshFI	GGCC	2 cut(s)	779, 797
BshVI	ATCGAT	1 cut(s)	108
BsiEI	CGRYCG	1 cut(s)	419
BsiHKAI	GWGCWC	1 cut(s)	903
BsiSI	CCGG	1 cut(s)	21
BslFI	GGGAC	2 cut(s)	361, 609
BslI	CCNNNNNNNGG	2 cut(s)	171, 290
BsmAI	GTCTC	1 cut(s)	723
BsmFI	GGGAC	2 cut(s)	361, 609
BsnI	GGCC	2 cut(s)	779, 797
Bsp119I	TTCGAA	1 cut(s)	864
Bsp1286I	GDGCHC	1 cut(s)	903
Bsp13I	TCCGGA	1 cut(s)	20
Bsp143I	GATC	9 cut(s)	31, 109, 133, 232, 256, 412, 617, 635, 906
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	2 cut(s)	779, 797
BspCNI	CTCAG	3 cut(s)	157, 570, 577
BspDI	ATCGAT	1 cut(s)	108
BspEI	TCCGGA	1 cut(s)	20
BspHI	TCATGA	1 cut(s)	909
BspLI	GGNNCC	2 cut(s)	492, 700
BspMAI	CTGCAG	1 cut(s)	170
BspMI	ACCTGC	1 cut(s)	173
BspPI	GGATC	4 cut(s)	128, 251, 625, 643
BspT104I	TTCGAA	1 cut(s)	864
BsrDI	GCAATG	1 cut(s)	476
BsrI	ACTGG	2 cut(s)	100, 946
BssECI	CCNNGG	4 cut(s)	426, 486, 693, 958
BssMI	GATC	9 cut(s)	31, 109, 133, 232, 256, 412, 617, 635, 906
BssNI	GRCGYC	1 cut(s)	518
BssSI	CACGAG	1 cut(s)	902
BssT1I	CCWWGG	3 cut(s)	426, 486, 693
Bst2BI	CACGAG	1 cut(s)	902
Bst2UI	CCWGG	2 cut(s)	557, 959
Bst4CI	ACNGT	2 cut(s)	214, 823
BstACI	GRCGYC	1 cut(s)	518
BstBI	TTCGAA	1 cut(s)	864
BstC8I	GCNNGC	2 cut(s)	567, 899
BstDEI	CTNAG	7 cut(s)	35, 144, 504, 570, 578, 585, 610
BstF5I	GGATG	6 cut(s)	10, 15, 17, 462, 605, 761
BstKTI	GATC	9 cut(s)	34, 112, 136, 235, 259, 415, 620, 638, 909
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	9 cut(s)	31, 109, 133, 232, 256, 412, 617, 635, 906
BstMCI	CGRYCG	1 cut(s)	419
BstNI	CCWGG	2 cut(s)	557, 959
BstSCI	CCNGG	2 cut(s)	555, 957
BstSFI	CTRYAG	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	152, 180
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
Bsu15I	ATCGAT	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	779, 797
BsuTUI	ATCGAT	1 cut(s)	108
BtsCI	GGATG	6 cut(s)	10, 15, 17, 462, 605, 761
BtsIMutI	CAGTG	1 cut(s)	819
BveI	ACCTGC	1 cut(s)	173
Cac8I	GCNNGC	2 cut(s)	567, 899
CciI	TCATGA	1 cut(s)	909
ClaI	ATCGAT	1 cut(s)	108
CseI	GACGC	2 cut(s)	37, 507
CviAII	CATG	4 cut(s)	29, 743, 844, 910
DdeI	CTNAG	7 cut(s)	35, 144, 504, 570, 578, 585, 610
DpnI	GATC	9 cut(s)	33, 111, 135, 234, 258, 414, 619, 637, 908
DpnII	GATC	9 cut(s)	31, 109, 133, 232, 256, 412, 617, 635, 906
EaeI	YGGCCR	1 cut(s)	777
Eco130I	CCWWGG	3 cut(s)	426, 486, 693
EcoRII	CCWGG	2 cut(s)	555, 957
EcoT14I	CCWWGG	3 cut(s)	426, 486, 693
EcoT22I	ATGCAT	1 cut(s)	478
ErhI	CCWWGG	3 cut(s)	426, 486, 693
FaeI	CATG	4 cut(s)	32, 746, 847, 913
FaiI	YATR	9 cut(s)	30, 237, 253, 474, 546, 744, 800, 845, 911
FaqI	GGGAC	2 cut(s)	361, 609
FatI	CATG	4 cut(s)	28, 742, 843, 909
FauI	CCCGC	1 cut(s)	164
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	2 cut(s)	141, 169
FokI	GGATG	6 cut(s)	4, 17, 22, 469, 592, 768
Fsp4HI	GCNGC	2 cut(s)	141, 169
GluI	GCNGC	2 cut(s)	141, 169
HaeIII	GGCC	2 cut(s)	779, 797
HapII	CCGG	1 cut(s)	21
HgaI	GACGC	2 cut(s)	37, 507
Hin1I	GRCGYC	1 cut(s)	518
Hin1II	CATG	4 cut(s)	32, 746, 847, 913
HindIII	AAGCTT	1 cut(s)	814
HinfI	GANTC	4 cut(s)	338, 768, 803, 861
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	2 cut(s)	630, 949
Hpy188I	TCNGA	5 cut(s)	436, 622, 708, 828, 954
Hpy188III	TCNNGA	4 cut(s)	21, 155, 420, 910
Hpy99I	CGWCG	1 cut(s)	397
HpyAV	CCTTC	5 cut(s)	435, 441, 447, 454, 608
HpyCH4III	ACNGT	2 cut(s)	214, 823
HpyCH4IV	ACGT	1 cut(s)	885
HpyCH4V	TGCA	6 cut(s)	17, 89, 168, 476, 550, 759
HpyF3I	CTNAG	7 cut(s)	35, 144, 504, 570, 578, 585, 610
HpySE526I	ACGT	1 cut(s)	885
Hsp92I	GRCGYC	1 cut(s)	518
Hsp92II	CATG	4 cut(s)	32, 746, 847, 913
Kpn2I	TCCGGA	1 cut(s)	20
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	9 cut(s)	31, 109, 133, 232, 256, 412, 617, 635, 906
Lsp1109I	GCAGC	2 cut(s)	152, 180
LweI	GCATC	5 cut(s)	26, 76, 523, 614, 746
MaeII	ACGT	1 cut(s)	885
MaeIII	GTNAC	4 cut(s)	41, 66, 667, 937
MalI	GATC	9 cut(s)	33, 111, 135, 234, 258, 414, 619, 637, 908
MboI	GATC	9 cut(s)	31, 109, 133, 232, 256, 412, 617, 635, 906
MboII	GAAGA	4 cut(s)	143, 329, 332, 409
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	903
MlsI	TGGCCA	1 cut(s)	779
MluCI	AATT	6 cut(s)	662, 676, 687, 850, 922, 968
MluNI	TGGCCA	1 cut(s)	779
MlyI	GAGTC	1 cut(s)	777
MmeI	TCCRAC	2 cut(s)	224, 674
MnlI	CCTC	4 cut(s)	32, 273, 616, 758
Mox20I	TGGCCA	1 cut(s)	779
Mph1103I	ATGCAT	1 cut(s)	478
MroI	TCCGGA	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	779
MseI	TTAA	4 cut(s)	54, 150, 686, 849
MslI	CAYNNNNRTG	1 cut(s)	506
Msp20I	TGGCCA	1 cut(s)	779
MspA1I	CMGCKG	1 cut(s)	171
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	2 cut(s)	557, 959
MvaI	CCWGG	2 cut(s)	557, 959
NdeII	GATC	9 cut(s)	31, 109, 133, 232, 256, 412, 617, 635, 906
NlaIII	CATG	4 cut(s)	32, 746, 847, 913
NlaIV	GGNNCC	2 cut(s)	492, 700
NmuCI	GTSAC	2 cut(s)	41, 937
NsiI	ATGCAT	1 cut(s)	478
NspV	TTCGAA	1 cut(s)	864
PagI	TCATGA	1 cut(s)	909
PcsI	WCGNNNNNNNCGW	2 cut(s)	312, 882
PfeI	GAWTC	3 cut(s)	338, 803, 861
PkrI	GCNGC	2 cut(s)	142, 170
PleI	GAGTC	1 cut(s)	776
PpsI	GAGTC	1 cut(s)	776
PshBI	ATTAAT	1 cut(s)	54
Psp6I	CCWGG	2 cut(s)	555, 957
PspGI	CCWGG	2 cut(s)	555, 957
PspN4I	GGNNCC	2 cut(s)	492, 700
PstI	CTGCAG	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	506
SaqAI	TTAA	4 cut(s)	54, 150, 686, 849
SatI	GCNGC	2 cut(s)	141, 169
Sau3AI	GATC	9 cut(s)	31, 109, 133, 232, 256, 412, 617, 635, 906
SchI	GAGTC	1 cut(s)	777
ScrFI	CCNGG	2 cut(s)	557, 959
SduI	GDGCHC	1 cut(s)	903
SfaNI	GCATC	5 cut(s)	26, 76, 523, 614, 746
SfcI	CTRYAG	1 cut(s)	166
SfuI	TTCGAA	1 cut(s)	864
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	1 cut(s)	720
SmoI	CTYRAG	1 cut(s)	720
Sse9I	AATT	6 cut(s)	662, 676, 687, 850, 922, 968
SsiI	CCGC	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	555, 957
StyI	CCWWGG	3 cut(s)	426, 486, 693
TaaI	ACNGT	2 cut(s)	214, 823
TaiI	ACGT	1 cut(s)	888
TaqI	TCGA	4 cut(s)	96, 108, 419, 864
TaqII	GACCGA	1 cut(s)	405
TasI	AATT	6 cut(s)	662, 676, 687, 850, 922, 968
TfiI	GAWTC	3 cut(s)	338, 803, 861
Tru1I	TTAA	4 cut(s)	54, 150, 686, 849
Tru9I	TTAA	4 cut(s)	54, 150, 686, 849
TscAI	CASTG	1 cut(s)	826
TseFI	GTSAC	2 cut(s)	41, 937
TseI	GCWGC	2 cut(s)	140, 168
Tsp45I	GTSAC	2 cut(s)	41, 937
TspDTI	ATGAA	6 cut(s)	94, 144, 317, 473, 731, 926
TspRI	CASTG	1 cut(s)	826
VspI	ATTAAT	1 cut(s)	54
XapI	RAATTY	1 cut(s)	922
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.