AT2G28430

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
12159548 .. 12160466
919 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G28430.1

Sequence Viewer

Length: 258 bp
ATGATCAGCATTCTCGCTCAGGAACGTCTTCTTGGTTACACTCTTGGTAGCGCTTTGACTGGATTCATCGTTTTTGAGCAGAGAAAACTCATCCATGACTCCGTTTCCGATCCTAAATCTCAATCCATTGATCAAGCTCAGGTGAGTGATCGTATTTTCGGGAAGAAATATCGTATGGAATTTGCGTCTCTGTGGAACAAAGCTGTGGATCAGACTTTTGAACCTGCGATTGAGTATCTTAGTTCACGTAAATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.79

Weight (kDa)

8.03

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 232
AclWI GGATC 2 cut(s) 104, 216
AcsI RAATTY 1 cut(s) 179
AfeI AGCGCT 1 cut(s) 52
AgsI TTSAA 1 cut(s) 221
AjuI GAANNNNNNNTTGG 2 cut(s) 15, 47
AluBI AGCT 2 cut(s) 137, 203
AluI AGCT 2 cut(s) 137, 203
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 2 cut(s) 104, 216
Aor51HI AGCGCT 1 cut(s) 52
ApoI RAATTY 1 cut(s) 179
Asp700I GAANNNNTTC 1 cut(s) 27
AspLEI GCGC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 154
BbsI GAAGAC 1 cut(s) 20
BclI TGATCA 2 cut(s) 3, 130
BcoDI GTCTC 1 cut(s) 192
BfoI RGCGCY 1 cut(s) 54
BfuAI ACCTGC 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 20
Bpu10I CCTNAGC 2 cut(s) 18, 138
BsaAI YACGTR 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 64
BseGI GGATG 1 cut(s) 90
BseMII CTCAG 2 cut(s) 32, 152
BseNI ACTGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 192
BsmBI CGTCTC 1 cut(s) 192
BsmI GAATGC 1 cut(s) 9
Bsp143I GATC 5 cut(s) 3, 109, 130, 148, 208
BspCNI CTCAG 2 cut(s) 31, 151
BspMI ACCTGC 1 cut(s) 232
BspPI GGATC 2 cut(s) 104, 216
BsrI ACTGG 1 cut(s) 64
BssMI GATC 5 cut(s) 3, 109, 130, 148, 208
BstBAI YACGTR 1 cut(s) 248
BstDEI CTNAG 3 cut(s) 18, 138, 239
BstF5I GGATG 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 5 cut(s) 6, 112, 133, 151, 211
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 5 cut(s) 3, 109, 130, 148, 208
BstV2I GAAGAC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 90
BveI ACCTGC 1 cut(s) 232
CfoI GCGC 1 cut(s) 53
CseI GACGC 1 cut(s) 174
CviAII CATG 1 cut(s) 95
CviJI RGCY 2 cut(s) 137, 203
CviKI_1 RGCY 2 cut(s) 137, 203
DdeI CTNAG 3 cut(s) 18, 138, 239
DpnI GATC 5 cut(s) 5, 111, 132, 150, 210
DpnII GATC 5 cut(s) 3, 109, 130, 148, 208
Eco47III AGCGCT 1 cut(s) 52
Esp3I CGTCTC 1 cut(s) 192
FaeI CATG 1 cut(s) 98
FaiI YATR 2 cut(s) 96, 176
FatI CATG 1 cut(s) 94
FbaI TGATCA 2 cut(s) 3, 130
FokI GGATG 1 cut(s) 77
GlaI GCGC 1 cut(s) 52
HaeII RGCGCY 1 cut(s) 54
HgaI GACGC 1 cut(s) 174
HhaI GCGC 1 cut(s) 53
Hin1II CATG 1 cut(s) 98
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 2 cut(s) 63, 98
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 245
Hpy188I TCNGA 2 cut(s) 109, 213
Hpy188III TCNNGA 2 cut(s) 20, 160
Hpy8I GTNNAC 1 cut(s) 245
HpyCH4IV ACGT 2 cut(s) 25, 247
HpyF3I CTNAG 3 cut(s) 18, 138, 239
HpySE526I ACGT 2 cut(s) 25, 247
Hsp92II CATG 1 cut(s) 98
HspAI GCGC 1 cut(s) 51
Ksp22I TGATCA 2 cut(s) 3, 130
Kzo9I GATC 5 cut(s) 3, 109, 130, 148, 208
LpnPI CCDG 4 cut(s) 5, 45, 125, 237
MaeII ACGT 2 cut(s) 25, 247
MaeIII GTNAC 1 cut(s) 35
MalI GATC 5 cut(s) 5, 111, 132, 150, 210
MboI GATC 5 cut(s) 3, 109, 130, 148, 208
MboII GAAGA 2 cut(s) 20, 175
MluCI AATT 1 cut(s) 179
MlyI GAGTC 1 cut(s) 92
MroXI GAANNNNTTC 1 cut(s) 27
MslI CAYNNNNRTG 1 cut(s) 250
Mva1269I GAATGC 1 cut(s) 9
NdeII GATC 5 cut(s) 3, 109, 130, 148, 208
NlaIII CATG 1 cut(s) 98
PctI GAATGC 1 cut(s) 9
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 63
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
Ppu21I YACGTR 1 cut(s) 248
RseI CAYNNNNRTG 1 cut(s) 250
Sau3AI GATC 5 cut(s) 3, 109, 130, 148, 208
SchI GAGTC 1 cut(s) 92
SetI ASST 6 cut(s) 28, 139, 144, 205, 226, 250
SmiMI CAYNNNNRTG 1 cut(s) 250
Sse9I AATT 1 cut(s) 179
TaiI ACGT 2 cut(s) 28, 250
TasI AATT 1 cut(s) 179
TfiI GAWTC 1 cut(s) 63
TspDTI ATGAA 1 cut(s) 55
TspGWI ACGGA 1 cut(s) 91
XapI RAATTY 1 cut(s) 179
XmnI GAANNNNTTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.