Rh5DG319900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0005147
Physical Location & Seq
Forward (+)
41194939 .. 41195223
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG319900.1

Sequence Viewer

Length: 285 bp
ATGATGGGGGACCGTTTATTGGGCGCCGCACTCGGAAGCATACTCACCGGAATCCGACGAAGCATCTACAACTCCATTTCTGGTACCAAACCTGAATCCGACCCAGTGGCAGTGTTCTTATTATTCGGGATGGGTGAGATCAGTGAGAGCGAGGGGGCGGTCGGCAGCCTCGGAGATGTGAACCGGAAGCTTCTTGTAGCCTATGGATCCGATGGCAGCGTAGATGGCTTCGATTTGGATGAAAAGCATGTTATCGTAGTGGAGATTTGTTGCCAGATCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

9.89

Weight (kDa)

4.46

Isoelectric Point (pI)

26.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 83
AccB1I GGYRCC 2 cut(s) 23, 83
AciI CCGC 2 cut(s) 27, 158
AclWI GGATC 3 cut(s) 201, 214, 271
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 1 cut(s) 85
AfiI CCNNNNNNNGG 1 cut(s) 19
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
AlwI GGATC 3 cut(s) 201, 214, 271
ApeKI GCWGC 2 cut(s) 165, 216
Asp718I GGTACC 1 cut(s) 83
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 10
AsuHPI GGTGA 2 cut(s) 37, 146
AvaII GGWCC 1 cut(s) 10
BamHI GGATCC 1 cut(s) 206
BanI GGYRCC 2 cut(s) 23, 83
BbvI GCAGC 2 cut(s) 177, 228
BccI CCATC 3 cut(s) 124, 206, 218
BfoI RGCGCY 1 cut(s) 27
BisI GCNGC 3 cut(s) 27, 166, 217
BlsI GCNGC 3 cut(s) 28, 167, 218
Bme18I GGWCC 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 4 cut(s) 11, 25, 85, 208
BmrI ACTGGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 169
BsaWI WCCGGW 2 cut(s) 47, 183
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse1I ACTGG 2 cut(s) 104, 280
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 2 cut(s) 135, 244
BseLI CCNNNNNNNGG 1 cut(s) 19
BseNI ACTGG 2 cut(s) 104, 280
BseXI GCAGC 2 cut(s) 177, 228
Bsh1285I CGRYCG 1 cut(s) 162
BshNI GGYRCC 2 cut(s) 23, 83
BsiEI CGRYCG 1 cut(s) 162
BsiSI CCGG 2 cut(s) 48, 184
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 23
Bsp143I GATC 3 cut(s) 138, 206, 276
BspACI CCGC 2 cut(s) 27, 158
BspLI GGNNCC 4 cut(s) 11, 25, 85, 208
BspPI GGATC 3 cut(s) 201, 214, 271
BspT107I GGYRCC 2 cut(s) 23, 83
BsrI ACTGG 2 cut(s) 104, 280
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 3 cut(s) 138, 206, 276
BssNI GRCGYC 1 cut(s) 24
Bst4CI ACNGT 1 cut(s) 14
BstACI GRCGYC 1 cut(s) 24
BstF5I GGATG 2 cut(s) 135, 244
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 3 cut(s) 141, 209, 279
BstMBI GATC 3 cut(s) 138, 206, 276
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 251
BstV1I GCAGC 2 cut(s) 177, 228
BstX2I RGATCY 2 cut(s) 206, 276
BstYI RGATCY 2 cut(s) 206, 276
BtsCI GGATG 2 cut(s) 135, 244
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 3 cut(s) 111, 117, 148
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 10
Csp6I GTAC 1 cut(s) 84
CviAII CATG 1 cut(s) 248
CviJI RGCY 4 cut(s) 168, 190, 200, 228
CviKI_1 RGCY 4 cut(s) 168, 190, 200, 228
CviQI GTAC 1 cut(s) 84
DinI GGCGCC 1 cut(s) 25
DpnI GATC 3 cut(s) 140, 208, 278
DpnII GATC 3 cut(s) 138, 206, 276
Eco47I GGWCC 1 cut(s) 10
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
FaeI CATG 1 cut(s) 251
FaiI YATR 3 cut(s) 41, 204, 249
FaqI GGGAC 1 cut(s) 23
FatI CATG 1 cut(s) 247
Fnu4HI GCNGC 3 cut(s) 27, 166, 217
FokI GGATG 2 cut(s) 142, 251
Fsp4HI GCNGC 3 cut(s) 27, 166, 217
GlaI GCGC 1 cut(s) 25
GluI GCNGC 3 cut(s) 27, 166, 217
HaeII RGCGCY 1 cut(s) 27
HapII CCGG 2 cut(s) 48, 184
HhaI GCGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 1 cut(s) 251
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 2 cut(s) 51, 95
HpaII CCGG 2 cut(s) 48, 184
HphI GGTGA 2 cut(s) 37, 146
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 5 cut(s) 35, 56, 100, 173, 211
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 1 cut(s) 60
HpyCH4III ACNGT 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 1 cut(s) 251
HspAI GCGC 1 cut(s) 24
KasI GGCGCC 1 cut(s) 23
KpnI GGTACC 1 cut(s) 87
Kzo9I GATC 3 cut(s) 138, 206, 276
LpnPI CCDG 5 cut(s) 61, 66, 105, 117, 197
Lsp1109I GCAGC 2 cut(s) 177, 228
LweI GCATC 1 cut(s) 72
MalI GATC 3 cut(s) 140, 208, 278
MboI GATC 3 cut(s) 138, 206, 276
MflI RGATCY 2 cut(s) 206, 276
Mly113I GGCGCC 1 cut(s) 24
MmeI TCCRAC 2 cut(s) 79, 123
MnlI CCTC 2 cut(s) 145, 179
MspI CCGG 2 cut(s) 48, 184
MwoI GCNNNNNNNGC 1 cut(s) 225
NarI GGCGCC 1 cut(s) 24
NdeII GATC 3 cut(s) 138, 206, 276
NlaIII CATG 1 cut(s) 251
NlaIV GGNNCC 4 cut(s) 11, 25, 85, 208
NspI RCATGY 1 cut(s) 251
PfeI GAWTC 2 cut(s) 51, 95
PkrI GCNGC 3 cut(s) 28, 167, 218
PluTI GGCGCC 1 cut(s) 27
PspN4I GGNNCC 4 cut(s) 11, 25, 85, 208
PspPI GGNCC 1 cut(s) 10
PsuI RGATCY 2 cut(s) 206, 276
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
SatI GCNGC 3 cut(s) 27, 166, 217
Sau3AI GATC 3 cut(s) 138, 206, 276
Sau96I GGNCC 1 cut(s) 10
SetI ASST 2 cut(s) 94, 192
SfaNI GCATC 1 cut(s) 72
SfoI GGCGCC 1 cut(s) 25
SinI GGWCC 1 cut(s) 10
SsiI CCGC 2 cut(s) 27, 158
SspDI GGCGCC 1 cut(s) 23
TaaI ACNGT 1 cut(s) 14
TaqI TCGA 1 cut(s) 231
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 2 cut(s) 51, 95
TscAI CASTG 3 cut(s) 111, 117, 148
TseI GCWGC 2 cut(s) 165, 216
TspDTI ATGAA 1 cut(s) 255
TspRI CASTG 3 cut(s) 111, 117, 148
VpaK11BI GGWCC 1 cut(s) 10
XceI RCATGY 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.