Rroxscaffold_1G00021330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005147
Physical Location & Seq
Forward (+)
26141205 .. 26144111
2907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021330.1

Sequence Viewer

Length: 258 bp
ATGATAAGCGTTCTTGCTCAGGAGCGTCTATTGGGCGCCGCACTCGGAAGCATACTCACCGGAATCGTTGTCTTTGAGCAGCGACGAAGCATCTACAACTCCATTTCTGGTACCCAACCAGAATCCGTTGCCCGATCTCAGATGAGAGAGCCCATATTTGGAAGGAAATCTCGCTCAGAGTTTGCGCACCTCTGGAACAAGGCTGTGGACCAGACATTTCGACCAGTGATCGAGTCCCTTAGTTCATCTGGATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.48

Weight (kDa)

10.22

Isoelectric Point (pI)

71.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 186
Acc65I GGTACC 1 cut(s) 110
AccB1I GGYRCC 2 cut(s) 35, 110
AciI CCGC 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 79
Asp718I GGTACC 1 cut(s) 110
AspLEI GCGC 2 cut(s) 38, 187
AspS9I GGNCC 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 49
AvaII GGWCC 1 cut(s) 208
BanI GGYRCC 2 cut(s) 35, 110
BanII GRGCYC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 91
BccI CCATC 1 cut(s) 246
BfoI RGCGCY 1 cut(s) 39
BisI GCNGC 2 cut(s) 39, 80
BlsI GCNGC 2 cut(s) 40, 81
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 2 cut(s) 37, 112
BmsI GCATC 1 cut(s) 99
Bpu10I CCTNAGC 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 59
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 224
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMII CTCAG 3 cut(s) 32, 152, 189
BseNI ACTGG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 91
BshNI GGYRCC 2 cut(s) 35, 110
BsiSI CCGG 1 cut(s) 60
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 2 cut(s) 134, 228
BspACI CCGC 1 cut(s) 39
BspCNI CTCAG 3 cut(s) 31, 151, 188
BspLI GGNNCC 2 cut(s) 37, 112
BspT107I GGYRCC 2 cut(s) 35, 110
BsrI ACTGG 1 cut(s) 224
BssMI GATC 2 cut(s) 134, 228
BssNI GRCGYC 1 cut(s) 36
BstACI GRCGYC 1 cut(s) 36
BstDEI CTNAG 4 cut(s) 18, 138, 175, 239
BstF5I GGATG 1 cut(s) 257
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 2 cut(s) 38, 187
BstKTI GATC 2 cut(s) 137, 231
BstMBI GATC 2 cut(s) 134, 228
BstV1I GCAGC 1 cut(s) 91
BtsCI GGATG 1 cut(s) 257
BtsIMutI CAGTG 1 cut(s) 231
CfoI GCGC 2 cut(s) 38, 187
Cfr13I GGNCC 1 cut(s) 208
CseI GACGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 111
CviJI RGCY 2 cut(s) 151, 203
CviKI_1 RGCY 2 cut(s) 151, 203
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 4 cut(s) 18, 138, 175, 239
DinI GGCGCC 1 cut(s) 37
DpnI GATC 2 cut(s) 136, 230
DpnII GATC 2 cut(s) 134, 228
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 153
EgeI GGCGCC 1 cut(s) 37
EheI GGCGCC 1 cut(s) 37
FaiI YATR 2 cut(s) 53, 155
FaqI GGGAC 1 cut(s) 220
Fnu4HI GCNGC 2 cut(s) 39, 80
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 2 cut(s) 39, 80
FspI TGCGCA 1 cut(s) 186
GlaI GCGC 2 cut(s) 37, 186
GluI GCNGC 2 cut(s) 39, 80
HaeII RGCGCY 1 cut(s) 39
HapII CCGG 1 cut(s) 60
HgaI GACGC 1 cut(s) 14
HhaI GCGC 2 cut(s) 38, 187
Hin1I GRCGYC 1 cut(s) 36
Hin6I GCGC 2 cut(s) 36, 185
HinP1I GCGC 2 cut(s) 36, 185
HinfI GANTC 3 cut(s) 63, 122, 233
HpaII CCGG 1 cut(s) 60
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 3 cut(s) 47, 141, 178
Hpy188III TCNNGA 3 cut(s) 20, 193, 249
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 1 cut(s) 87
HpyAV CCTTC 1 cut(s) 156
HpyF3I CTNAG 4 cut(s) 18, 138, 175, 239
Hsp92I GRCGYC 1 cut(s) 36
HspAI GCGC 2 cut(s) 36, 185
KasI GGCGCC 1 cut(s) 35
KpnI GGTACC 1 cut(s) 114
Kzo9I GATC 2 cut(s) 134, 228
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 8 cut(s) 5, 73, 93, 132, 178, 224, 234, 237
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 1 cut(s) 99
MalI GATC 2 cut(s) 136, 230
MboI GATC 2 cut(s) 134, 228
MhlI GDGCHC 1 cut(s) 153
Mly113I GGCGCC 1 cut(s) 36
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 1 cut(s) 200
MslI CAYNNNNRTG 1 cut(s) 250
MspI CCGG 1 cut(s) 60
NarI GGCGCC 1 cut(s) 36
NdeII GATC 2 cut(s) 134, 228
NlaIV GGNNCC 2 cut(s) 37, 112
NsbI TGCGCA 1 cut(s) 186
PfeI GAWTC 2 cut(s) 63, 122
PkrI GCNGC 2 cut(s) 40, 81
PleI GAGTC 1 cut(s) 241
PluTI GGCGCC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 241
PspN4I GGNNCC 2 cut(s) 37, 112
PspPI GGNCC 1 cut(s) 208
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
RseI CAYNNNNRTG 1 cut(s) 250
SatI GCNGC 2 cut(s) 39, 80
Sau3AI GATC 2 cut(s) 134, 228
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 1 cut(s) 242
SduI GDGCHC 1 cut(s) 153
SetI ASST 1 cut(s) 192
SfaNI GCATC 1 cut(s) 99
SfoI GGCGCC 1 cut(s) 37
SinI GGWCC 1 cut(s) 208
SmiMI CAYNNNNRTG 1 cut(s) 250
SsiI CCGC 1 cut(s) 39
SspDI GGCGCC 1 cut(s) 35
TaqI TCGA 2 cut(s) 220, 231
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 2 cut(s) 63, 122
TscAI CASTG 1 cut(s) 231
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 234
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.