Rh7CG237200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005147
Physical Location & Seq
Reverse (-)
22220281 .. 22220592
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG237200.1

Sequence Viewer

Length: 312 bp
ATGTTTATGCACAAATATGTATGCCCGATTACACTGCTGGAGATTCTCGCCCTCCTTCTCTCTCATGGACAAGTAGCCGTTACTGGAAGAAGAACCGGGTGGCGACGATCCGATAGTAATCAGTGTGGCTCTGGCCCCGTCCTCGTCGCCTTTGGACGGCCAGCCGGTCTCGGAGATGTGAACCAGAAGCTTCTTGTAGCCGAGGGATCTGAGAATCGCTTGGTCAAGCTTTTGTTGGATCTGATGCTCTTCGATCTTCGTCAAGTTCAAATCCATGAGATTTTTCTGCTGTGTTTCAAATCGTTAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.48

Weight (kDa)

9.02

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 102, 214, 246
AcoI YGGCCR 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 156
AgsI TTSAA 2 cut(s) 269, 298
AluBI AGCT 2 cut(s) 190, 229
AluI AGCT 2 cut(s) 190, 229
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 3 cut(s) 102, 214, 246
AoxI GGCC 2 cut(s) 133, 158
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 1 cut(s) 97
BceAI ACGGC 2 cut(s) 62, 173
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 173
Bme1390I CCNGG 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 97
BmsI GCATC 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 97
BsaBI GATNNNNATC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 201
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 88
Bse8I GATNNNNATC 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 201
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 88
BshFI GGCC 2 cut(s) 135, 160
BsiSI CCGG 2 cut(s) 96, 165
BslI CCNNNNNNNGG 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 173
BsnI GGCC 2 cut(s) 135, 160
Bso31I GGTCTC 1 cut(s) 173
Bsp143I GATC 4 cut(s) 107, 206, 238, 253
BspANI GGCC 2 cut(s) 135, 160
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 136
BspPI GGATC 3 cut(s) 102, 214, 246
BspQI GCTCTTC 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 173
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 4 cut(s) 107, 206, 238, 253
Bst6I CTCTTC 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 210
BstKTI GATC 4 cut(s) 110, 209, 241, 256
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 4 cut(s) 107, 206, 238, 253
BstSCI CCNGG 1 cut(s) 95
BstX2I RGATCY 2 cut(s) 206, 238
BstYI RGATCY 2 cut(s) 206, 238
BsuRI GGCC 2 cut(s) 135, 160
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 2 cut(s) 32, 128
Cac8I GCNNGC 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 134
CviAII CATG 2 cut(s) 65, 275
CviJI RGCY 8 cut(s) 77, 129, 135, 160, 164, 190, 200, 229
CviKI_1 RGCY 8 cut(s) 77, 129, 135, 160, 164, 190, 200, 229
DdeI CTNAG 1 cut(s) 210
DpnI GATC 4 cut(s) 109, 208, 240, 255
DpnII GATC 4 cut(s) 107, 206, 238, 253
EaeI YGGCCR 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Eco31I GGTCTC 1 cut(s) 173
FaeI CATG 2 cut(s) 68, 278
FaiI YATR 5 cut(s) 8, 18, 22, 66, 276
FatI CATG 2 cut(s) 64, 274
GsuI CTGGAG 1 cut(s) 59
HaeIII GGCC 2 cut(s) 135, 160
HapII CCGG 2 cut(s) 96, 165
Hin1II CATG 2 cut(s) 68, 278
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HindIII AAGCTT 2 cut(s) 188, 227
HinfI GANTC 2 cut(s) 43, 214
HpaI GTTAAC 1 cut(s) 306
HpaII CCGG 2 cut(s) 96, 165
Hpy166II GTNNAC 2 cut(s) 181, 306
Hpy188I TCNGA 4 cut(s) 112, 173, 211, 243
Hpy8I GTNNAC 2 cut(s) 181, 306
Hpy99I CGWCG 2 cut(s) 108, 149
HpyAV CCTTC 1 cut(s) 65
HpyCH4V TGCA 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 2 cut(s) 68, 278
KspAI GTTAAC 1 cut(s) 306
Kzo9I GATC 4 cut(s) 107, 206, 238, 253
LguI GCTCTTC 1 cut(s) 254
LpnPI CCDG 7 cut(s) 23, 69, 109, 117, 174, 178, 197
LweI GCATC 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 79
MalI GATC 4 cut(s) 109, 208, 240, 255
MboI GATC 4 cut(s) 107, 206, 238, 253
MboII GAAGA 4 cut(s) 99, 102, 241, 248
MflI RGATCY 2 cut(s) 206, 238
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 3 cut(s) 62, 152, 196
MseI TTAA 1 cut(s) 305
MslI CAYNNNNRTG 1 cut(s) 15
MspI CCGG 2 cut(s) 96, 165
MspR9I CCNGG 1 cut(s) 97
NciI CCSGG 1 cut(s) 97
NdeII GATC 4 cut(s) 107, 206, 238, 253
NlaIII CATG 2 cut(s) 68, 278
NlaIV GGNNCC 1 cut(s) 136
NmeAIII GCCGAG 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 254
PfeI GAWTC 2 cut(s) 43, 214
PspN4I GGNNCC 1 cut(s) 136
PspPI GGNCC 1 cut(s) 134
PsuI RGATCY 2 cut(s) 206, 238
RseI CAYNNNNRTG 1 cut(s) 15
SapI GCTCTTC 1 cut(s) 254
SaqAI TTAA 1 cut(s) 305
Sau3AI GATC 4 cut(s) 107, 206, 238, 253
Sau96I GGNCC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 97
SetI ASST 2 cut(s) 192, 231
SfaNI GCATC 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 95
TaqI TCGA 1 cut(s) 252
TfiI GAWTC 2 cut(s) 43, 214
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TscAI CASTG 2 cut(s) 39, 128
TspRI CASTG 2 cut(s) 39, 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.