Rh1DG170200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005147
Physical Location & Seq
Forward (+)
35008841 .. 35009225
385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG170200.1

Sequence Viewer

Length: 288 bp
ATGAAAAGCGTTCTTGCTCAGGACCATCTATTAGGCATCGCACTCGGAAGCATACTCACCAGAATCCGACGAAGCATCTACAACTCCATTTCTGGTACCAAACCTAAATCCGACCCGGTGGTGGTGTTCTTATTGTTCAGTATGGGTGAGATCGGTGAGAGCGAGGGGGAGGTCGGCGGCCTTGGAGATGTGAACCAGAAGCTTCTTGTATCCTCGGGATCCGAGGGCGGCATAGACGACATTGATTTGGGCGAAGAGCATGTTGTCGTAGTGGAGATTGGAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

9.94

Weight (kDa)

4.55

Isoelectric Point (pI)

34.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 95
AccB1I GGYRCC 1 cut(s) 95
AciI CCGC 2 cut(s) 177, 228
AclWI GGATC 2 cut(s) 213, 226
AfaI GTAC 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 121
AluBI AGCT 2 cut(s) 202, 285
AluI AGCT 2 cut(s) 202, 285
AlwI GGATC 2 cut(s) 213, 226
Ama87I CYCGRG 1 cut(s) 214
AoxI GGCC 1 cut(s) 178
Asp718I GGTACC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 22
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 3 cut(s) 49, 158, 167
AvaI CYCGRG 1 cut(s) 214
AvaII GGWCC 1 cut(s) 22
BamHI GGATCC 1 cut(s) 218
BanI GGYRCC 1 cut(s) 95
BccI CCATC 1 cut(s) 33
BcgI CGANNNNNNTGC 2 cut(s) 25, 59
BciVI GTATCC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 116
BfaI CTAG 1 cut(s) 286
BfuI GTATCC 1 cut(s) 220
BisI GCNGC 2 cut(s) 178, 229
BlsI GCNGC 2 cut(s) 179, 230
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 22
BmeT110I CYCGRG 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 22
BmiI GGNNCC 2 cut(s) 97, 220
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 2 cut(s) 45, 84
Bpu10I CCTNAGC 1 cut(s) 18
BpuMI CCSGG 1 cut(s) 116
BsaJI CCNNGG 3 cut(s) 181, 213, 222
Bsc4I CCNNNNNNNGG 1 cut(s) 121
BseDI CCNNGG 3 cut(s) 181, 213, 222
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 32
BshFI GGCC 1 cut(s) 180
BshNI GGYRCC 1 cut(s) 95
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 121
BsnI GGCC 1 cut(s) 180
BsoBI CYCGRG 1 cut(s) 214
Bsp143I GATC 2 cut(s) 150, 218
BspACI CCGC 2 cut(s) 177, 228
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 97, 220
BspPI GGATC 2 cut(s) 213, 226
BspQI GCTCTTC 1 cut(s) 249
BspT107I GGYRCC 1 cut(s) 95
BssECI CCNNGG 3 cut(s) 181, 213, 222
BssMI GATC 2 cut(s) 150, 218
BssT1I CCWWGG 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 18
BstKTI GATC 2 cut(s) 153, 221
BstMBI GATC 2 cut(s) 150, 218
BstNSI RCATGY 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
BsuI GTATCC 1 cut(s) 220
BsuRI GGCC 1 cut(s) 180
BtgZI GCGATG 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 96
CviAII CATG 1 cut(s) 260
CviJI RGCY 3 cut(s) 180, 202, 285
CviKI_1 RGCY 3 cut(s) 180, 202, 285
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 1 cut(s) 18
DpnI GATC 2 cut(s) 152, 220
DpnII GATC 2 cut(s) 150, 218
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
FaeI CATG 1 cut(s) 263
FaiI YATR 4 cut(s) 53, 143, 233, 261
FatI CATG 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 178, 229
Fsp4HI GCNGC 2 cut(s) 178, 229
FspBI CTAG 1 cut(s) 286
GluI GCNGC 2 cut(s) 178, 229
HaeIII GGCC 1 cut(s) 180
HapII CCGG 1 cut(s) 116
Hin1II CATG 1 cut(s) 263
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 1 cut(s) 63
HpaII CCGG 1 cut(s) 116
HphI GGTGA 3 cut(s) 49, 158, 167
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 4 cut(s) 47, 68, 112, 223
Hpy188III TCNNGA 2 cut(s) 20, 216
Hpy8I GTNNAC 1 cut(s) 193
Hpy99I CGWCG 1 cut(s) 72
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 1 cut(s) 263
KpnI GGTACC 1 cut(s) 99
Kzo9I GATC 2 cut(s) 150, 218
LguI GCTCTTC 1 cut(s) 249
LpnPI CCDG 5 cut(s) 5, 73, 78, 129, 209
LweI GCATC 2 cut(s) 45, 84
MaeI CTAG 1 cut(s) 286
MalI GATC 2 cut(s) 152, 220
MboI GATC 2 cut(s) 150, 218
MboII GAAGA 1 cut(s) 266
MflI RGATCY 1 cut(s) 218
MmeI TCCRAC 2 cut(s) 91, 135
MnlI CCTC 4 cut(s) 157, 163, 217, 223
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 116
NciI CCSGG 1 cut(s) 116
NdeII GATC 2 cut(s) 150, 218
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 2 cut(s) 97, 220
NspI RCATGY 1 cut(s) 263
PciSI GCTCTTC 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PfeI GAWTC 1 cut(s) 63
PkrI GCNGC 2 cut(s) 179, 230
PspN4I GGNNCC 2 cut(s) 97, 220
PspPI GGNCC 1 cut(s) 22
PsuI RGATCY 1 cut(s) 218
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 249
SatI GCNGC 2 cut(s) 178, 229
Sau3AI GATC 2 cut(s) 150, 218
Sau96I GGNCC 1 cut(s) 22
ScrFI CCNGG 1 cut(s) 116
SetI ASST 4 cut(s) 106, 174, 204, 287
SfaNI GCATC 2 cut(s) 45, 84
SinI GGWCC 1 cut(s) 22
SsiI CCGC 2 cut(s) 177, 228
SspMI CTAG 1 cut(s) 286
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 181
TauI GCSGC 2 cut(s) 180, 231
TfiI GAWTC 1 cut(s) 63
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 22
XceI RCATGY 1 cut(s) 263
XspI CTAG 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.