Rh5CG420900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0005147
Physical Location & Seq
Reverse (-)
58010186 .. 58011967
1782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG420900.1

Sequence Viewer

Length: 351 bp
ATGATGATGATGATGCAGGAGCGTCTATTGGGCGCCGCACTCGGAAGCATACTCACCGGAATCGTTGTCTTTGAGCAGCGACGAAGCATCTACAACTCCATTTCTGGTACCCAACCTGAATCCGTTGCCCGATCTCAGGTAATTCCCAAACTTTGTATTCAATTTGATGCTTTACGCACCGTTTTGGTGGTGACTGAAACCCTAACTTTAGCTTTGTGCTCTATCGTTTCATTTCTGGTTTGTGTTAGAATCAGGGTTCATGTTGTTCATAACCAACTTTTTTTTTTTTTATCAAGATTTGAACTTTTTACCCAATTGACCAGATTATTATGTCTGATCAGAATTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.25

Weight (kDa)

9.68

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 107
AccB1I GGYRCC 2 cut(s) 32, 107
AciI CCGC 1 cut(s) 36
AcsI RAATTY 1 cut(s) 342
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 2 cut(s) 161, 302
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
Alw21I GWGCWC 1 cut(s) 221
ApeKI GCWGC 1 cut(s) 76
ApoI RAATTY 1 cut(s) 342
Asp718I GGTACC 1 cut(s) 107
AspLEI GCGC 1 cut(s) 35
AsuHPI GGTGA 2 cut(s) 46, 202
BanI GGYRCC 2 cut(s) 32, 107
Bbv12I GWGCWC 1 cut(s) 221
BbvI GCAGC 1 cut(s) 88
BclI TGATCA 1 cut(s) 336
BfoI RGCGCY 1 cut(s) 36
BisI GCNGC 2 cut(s) 36, 77
BlsI GCNGC 2 cut(s) 37, 78
BmiI GGNNCC 2 cut(s) 34, 109
BmsI GCATC 3 cut(s) 3, 96, 157
BsaHI GRCGYC 1 cut(s) 33
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 88
BshNI GGYRCC 2 cut(s) 32, 107
BsiHKAI GWGCWC 1 cut(s) 221
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 221
Bsp143I GATC 2 cut(s) 131, 336
BspACI CCGC 1 cut(s) 36
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 2 cut(s) 34, 109
BspT107I GGYRCC 2 cut(s) 32, 107
BssMI GATC 2 cut(s) 131, 336
BssNI GRCGYC 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 181
BstACI GRCGYC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 135
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 2 cut(s) 134, 339
BstMBI GATC 2 cut(s) 131, 336
BstV1I GCAGC 1 cut(s) 88
CfoI GCGC 1 cut(s) 35
CseI GACGC 1 cut(s) 11
Csp6I GTAC 1 cut(s) 108
CviAII CATG 1 cut(s) 260
CviJI RGCY 1 cut(s) 212
CviKI_1 RGCY 1 cut(s) 212
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 1 cut(s) 135
DinI GGCGCC 1 cut(s) 34
DpnI GATC 2 cut(s) 133, 338
DpnII GATC 2 cut(s) 131, 336
EgeI GGCGCC 1 cut(s) 34
EheI GGCGCC 1 cut(s) 34
FaeI CATG 1 cut(s) 263
FaiI YATR 4 cut(s) 50, 261, 270, 331
FatI CATG 1 cut(s) 259
FbaI TGATCA 1 cut(s) 336
Fnu4HI GCNGC 2 cut(s) 36, 77
Fsp4HI GCNGC 2 cut(s) 36, 77
GlaI GCGC 1 cut(s) 34
GluI GCNGC 2 cut(s) 36, 77
HaeII RGCGCY 1 cut(s) 36
HapII CCGG 1 cut(s) 57
HgaI GACGC 1 cut(s) 11
HhaI GCGC 1 cut(s) 35
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 1 cut(s) 263
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HinfI GANTC 3 cut(s) 60, 119, 249
HpaII CCGG 1 cut(s) 57
HphI GGTGA 2 cut(s) 46, 202
Hpy188I TCNGA 3 cut(s) 44, 336, 341
Hpy188III TCNNGA 1 cut(s) 294
Hpy99I CGWCG 1 cut(s) 84
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 16
HpyF3I CTNAG 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 1 cut(s) 263
HspAI GCGC 1 cut(s) 33
KasI GGCGCC 1 cut(s) 32
KpnI GGTACC 1 cut(s) 111
Ksp22I TGATCA 1 cut(s) 336
Kzo9I GATC 2 cut(s) 131, 336
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 8 cut(s) 2, 70, 90, 122, 129, 221, 238, 334
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 3 cut(s) 3, 96, 157
MaeIII GTNAC 1 cut(s) 190
MalI GATC 2 cut(s) 133, 338
MboI GATC 2 cut(s) 131, 336
MfeI CAATTG 1 cut(s) 314
MhlI GDGCHC 1 cut(s) 221
MluCI AATT 4 cut(s) 141, 161, 314, 342
Mly113I GGCGCC 1 cut(s) 33
MspI CCGG 1 cut(s) 57
MunI CAATTG 1 cut(s) 314
NarI GGCGCC 1 cut(s) 33
NdeII GATC 2 cut(s) 131, 336
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 2 cut(s) 34, 109
NmuCI GTSAC 1 cut(s) 190
PfeI GAWTC 3 cut(s) 60, 119, 249
PkrI GCNGC 2 cut(s) 37, 78
PluTI GGCGCC 1 cut(s) 36
PspN4I GGNNCC 2 cut(s) 34, 109
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SatI GCNGC 2 cut(s) 36, 77
Sau3AI GATC 2 cut(s) 131, 336
SduI GDGCHC 1 cut(s) 221
SetI ASST 3 cut(s) 118, 141, 214
SfaNI GCATC 3 cut(s) 3, 96, 157
SfoI GGCGCC 1 cut(s) 34
Sse9I AATT 4 cut(s) 141, 161, 314, 342
SsiI CCGC 1 cut(s) 36
SspDI GGCGCC 1 cut(s) 32
TaaI ACNGT 1 cut(s) 181
TasI AATT 4 cut(s) 141, 161, 314, 342
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 3 cut(s) 60, 119, 249
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 3 cut(s) 219, 248, 257
TspGWI ACGGA 1 cut(s) 112
XapI RAATTY 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.