FvH4_3g32290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0005147
Physical Location & Seq
Reverse (-)
27578592 .. 27580594
2003 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g32290.t1

Sequence Viewer

Length: 258 bp
ATGATAAGCGTTCTTGCTCAGGAGCGTCTATTGGGCGCCGCAGCTGGAAGCATAGTCACCGCAATCGTTGTATTTGATCAACGCCGAAGCATCTACAGCTCAATTTCCGGCACGAAACCTGAATCCGTTGCCCAATATCGGAGGATTGAGCCCTTATTTGGAAGGAAATCTTGCTCAGAGCTTGCACACCTCTGGAACAAAGCTGTGGATGAGACATTTCGACCAGTTATTGAGTCCCTTACTTCATCCGGATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.38

Weight (kDa)

9.03

Isoelectric Point (pI)

65.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 35
AccIII TCCGGA 1 cut(s) 248
AciI CCGC 2 cut(s) 39, 60
AcyI GRCGYC 1 cut(s) 36
AfiI CCNNNNNNNGG 2 cut(s) 138, 158
AluBI AGCT 4 cut(s) 44, 99, 181, 203
AluI AGCT 4 cut(s) 44, 99, 181, 203
Alw26I GTCTC 1 cut(s) 206
Aor13HI TCCGGA 1 cut(s) 248
ApeKI GCWGC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 49
BanI GGYRCC 1 cut(s) 35
BanII GRGCYC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 53
BccI CCATC 1 cut(s) 246
BclI TGATCA 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 206
BfmI CTRYAG 1 cut(s) 94
BfoI RGCGCY 1 cut(s) 39
BisI GCNGC 2 cut(s) 39, 42
BlsI GCNGC 2 cut(s) 40, 43
BmiI GGNNCC 1 cut(s) 37
BmsI GCATC 1 cut(s) 99
Bpu10I CCTNAGC 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 248
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 158
Bse1I ACTGG 1 cut(s) 224
BseAI TCCGGA 1 cut(s) 248
BseGI GGATG 3 cut(s) 214, 245, 257
BseLI CCNNNNNNNGG 2 cut(s) 138, 158
BseMII CTCAG 2 cut(s) 32, 189
BseNI ACTGG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 53
BshNI GGYRCC 1 cut(s) 35
BsiSI CCGG 2 cut(s) 108, 249
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 2 cut(s) 138, 158
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 153
Bsp13I TCCGGA 1 cut(s) 248
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 2 cut(s) 39, 60
BspCNI CTCAG 2 cut(s) 31, 188
BspEI TCCGGA 1 cut(s) 248
BspLI GGNNCC 1 cut(s) 37
BspT107I GGYRCC 1 cut(s) 35
BsrI ACTGG 1 cut(s) 224
BssMI GATC 1 cut(s) 76
BssNI GRCGYC 1 cut(s) 36
BstACI GRCGYC 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 18, 175
BstF5I GGATG 3 cut(s) 214, 245, 257
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstSFI CTRYAG 1 cut(s) 94
BstV1I GCAGC 1 cut(s) 53
BtsCI GGATG 3 cut(s) 214, 245, 257
Cac8I GCNNGC 1 cut(s) 183
CfoI GCGC 1 cut(s) 38
CseI GACGC 1 cut(s) 14
CviJI RGCY 5 cut(s) 44, 99, 151, 181, 203
CviKI_1 RGCY 5 cut(s) 44, 99, 151, 181, 203
DdeI CTNAG 2 cut(s) 18, 175
DinI GGCGCC 1 cut(s) 37
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 153
EgeI GGCGCC 1 cut(s) 37
EheI GGCGCC 1 cut(s) 37
FaiI YATR 1 cut(s) 53
FalI AAGNNNNNCTT 2 cut(s) 154, 186
FaqI GGGAC 1 cut(s) 220
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 2 cut(s) 39, 42
FokI GGATG 2 cut(s) 221, 232
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 2 cut(s) 39, 42
GlaI GCGC 1 cut(s) 37
GluI GCNGC 2 cut(s) 39, 42
HaeII RGCGCY 1 cut(s) 39
HapII CCGG 2 cut(s) 108, 249
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 38
Hin1I GRCGYC 1 cut(s) 36
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HinfI GANTC 2 cut(s) 122, 233
HpaII CCGG 2 cut(s) 108, 249
HphI GGTGA 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 141, 178
Hpy188III TCNNGA 3 cut(s) 20, 193, 249
HpyAV CCTTC 1 cut(s) 156
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 2 cut(s) 18, 175
Hsp92I GRCGYC 1 cut(s) 36
HspAI GCGC 1 cut(s) 36
KasI GGCGCC 1 cut(s) 35
Kpn2I TCCGGA 1 cut(s) 248
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 6 cut(s) 5, 30, 121, 132, 178, 237
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 1 cut(s) 102
Mly113I GGCGCC 1 cut(s) 36
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 2 cut(s) 135, 200
MroI TCCGGA 1 cut(s) 248
MslI CAYNNNNRTG 1 cut(s) 250
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 2 cut(s) 108, 249
MwoI GCNNNNNNNGC 1 cut(s) 96
NarI GGCGCC 1 cut(s) 36
NdeII GATC 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 55
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 2 cut(s) 40, 43
PleI GAGTC 1 cut(s) 241
PluTI GGCGCC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 37
PvuII CAGCTG 1 cut(s) 44
RseI CAYNNNNRTG 1 cut(s) 250
SatI GCNGC 2 cut(s) 39, 42
Sau3AI GATC 1 cut(s) 76
SchI GAGTC 1 cut(s) 242
SduI GDGCHC 1 cut(s) 153
SetI ASST 6 cut(s) 46, 101, 121, 183, 192, 205
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 94
SfoI GGCGCC 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 250
Sse9I AATT 1 cut(s) 102
SsiI CCGC 2 cut(s) 39, 60
SspDI GGCGCC 1 cut(s) 35
TaqI TCGA 1 cut(s) 220
TasI AATT 1 cut(s) 102
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 1 cut(s) 122
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 234
TspGWI ACGGA 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.