MD03G1117700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0005147
Physical Location & Seq
Forward (+)
10593186 .. 10595441
2256 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1117700.v1.1.491

Sequence Viewer

Length: 252 bp
ATGATTAGCGTTCTTGCTCAGGAGCGTCTGCTGGGCGCTGCACTCGGAAGCATTTTCACGGGGATCGTTGTGTTCGAGCAGCGCCGATGCATCTACAACTCCATTTCCGGCACCAAACCTCAACCAGTTTCCCGGATTACAGAGCCCATATTTGGAAGGAAAACTCGTGCAGAGCTTGCACATCTTTGGAACAAAGCTGTGGACCAGACATTTCGACCTGTGATTGAATCTCTTAGTTCATCTGGATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.23

Weight (kDa)

10.01

Isoelectric Point (pI)

53.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 110
AclWI GGATC 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 227
AluBI AGCT 2 cut(s) 175, 197
AluI AGCT 2 cut(s) 175, 197
AlwI GGATC 1 cut(s) 71
ApeKI GCWGC 2 cut(s) 38, 79
AspLEI GCGC 2 cut(s) 38, 84
AspS9I GGNCC 1 cut(s) 202
AsuC2I CCSGG 1 cut(s) 133
AvaII GGWCC 1 cut(s) 202
BanI GGYRCC 1 cut(s) 110
BanII GRGCYC 1 cut(s) 147
BauI CACGAG 1 cut(s) 165
BbvI GCAGC 2 cut(s) 25, 91
BccI CCATC 1 cut(s) 240
BcnI CCSGG 1 cut(s) 133
BfoI RGCGCY 2 cut(s) 39, 85
BisI GCNGC 2 cut(s) 39, 80
BlsI GCNGC 2 cut(s) 40, 81
Bme1390I CCNGG 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 112
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 2 cut(s) 77, 99
Bpu10I CCTNAGC 1 cut(s) 18
BpuMI CCSGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 125
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 125
BseXI GCAGC 2 cut(s) 25, 91
BseYI CCCAGC 1 cut(s) 31
BsgI GTGCAG 2 cut(s) 24, 189
BshNI GGYRCC 1 cut(s) 110
BsiSI CCGG 2 cut(s) 108, 133
BslI CCNNNNNNNGG 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 112
BspPI GGATC 1 cut(s) 71
BspT107I GGYRCC 1 cut(s) 110
BsrI ACTGG 1 cut(s) 125
BssMI GATC 1 cut(s) 63
BssSI CACGAG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 165
BstAPI GCANNNNNTGC 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 2 cut(s) 18, 233
BstF5I GGATG 1 cut(s) 251
BstH2I RGCGCY 2 cut(s) 39, 85
BstHHI GCGC 2 cut(s) 38, 84
BstKTI GATC 1 cut(s) 66
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 131
BstV1I GCAGC 2 cut(s) 25, 91
BtsCI GGATG 1 cut(s) 251
Cac8I GCNNGC 1 cut(s) 177
CfoI GCGC 2 cut(s) 38, 84
Cfr13I GGNCC 1 cut(s) 202
CseI GACGC 1 cut(s) 14
CviJI RGCY 3 cut(s) 145, 175, 197
CviKI_1 RGCY 3 cut(s) 145, 175, 197
DdeI CTNAG 2 cut(s) 18, 233
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 202
EcoT22I ATGCAT 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 147
FaiI YATR 1 cut(s) 149
Fnu4HI GCNGC 2 cut(s) 39, 80
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 2 cut(s) 39, 80
GlaI GCGC 2 cut(s) 37, 83
GluI GCNGC 2 cut(s) 39, 80
GsaI CCCAGC 1 cut(s) 35
HaeII RGCGCY 2 cut(s) 39, 85
HapII CCGG 2 cut(s) 108, 133
HgaI GACGC 1 cut(s) 14
HhaI GCGC 2 cut(s) 38, 84
Hin6I GCGC 2 cut(s) 36, 82
HinP1I GCGC 2 cut(s) 36, 82
HinfI GANTC 1 cut(s) 227
HpaII CCGG 2 cut(s) 108, 133
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 2 cut(s) 20, 243
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 150
HpyCH4V TGCA 4 cut(s) 41, 90, 170, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 2 cut(s) 18, 233
HspAI GCGC 2 cut(s) 36, 82
Kzo9I GATC 1 cut(s) 63
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 8 cut(s) 5, 17, 121, 138, 146, 218, 228, 231
Lsp1109I GCAGC 2 cut(s) 25, 91
LweI GCATC 2 cut(s) 77, 99
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 147
MnlI CCTC 1 cut(s) 129
Mph1103I ATGCAT 1 cut(s) 92
MslI CAYNNNNRTG 1 cut(s) 244
MspI CCGG 2 cut(s) 108, 133
MspR9I CCNGG 1 cut(s) 133
MwoI GCNNNNNNNGC 1 cut(s) 176
NciI CCSGG 1 cut(s) 133
NdeII GATC 1 cut(s) 63
NlaIV GGNNCC 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PfeI GAWTC 1 cut(s) 227
PfoI TCCNGGA 1 cut(s) 131
PkrI GCNGC 2 cut(s) 40, 81
PspFI CCCAGC 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 244
SatI GCNGC 2 cut(s) 39, 80
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 1 cut(s) 147
SetI ASST 4 cut(s) 121, 177, 199, 220
SfaNI GCATC 2 cut(s) 77, 99
SinI GGWCC 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 244
StyD4I CCNGG 1 cut(s) 131
TaqI TCGA 2 cut(s) 75, 214
TfiI GAWTC 1 cut(s) 227
TseI GCWGC 2 cut(s) 38, 79
TspDTI ATGAA 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 202
Zsp2I ATGCAT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.