Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005147

Physical Location & Seq

Genomic Coordinates Reverse (-)

44230941 .. 44231455

Gene Structure 515 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034522

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCCATGGTTAAGTTTGTTGCTGCCTTGATCCTGTCACTCCTTGCAATCTCCACGCTGGAGCATTGGAAGAAATCCAACAGCCATGAAAAGCATTCTTGCTCAAGACTGTCTATTGGCCGCCGCACTCAGAAGCATACTCACTGGAATCCGACGAAGCATCTACAATCTATTTCTGGTACCAAACCTGAATCCGACCCAGTGGTGGTGTTCTTATTGTTTGGTGTGGTGAGATCGGTGAGCAAGGGGGCTGTCAGCGTTGACCAGGAACGGAGATTTGATTTTGGAGTGGAAATCGAGGACCGGAGATATGCAATTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

12.14

Weight (kDa)

9.91

Isoelectric Point (pI)

56.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28430
fragaria_vesca	FvH4_3g32290
malus_domestica	MD03G1117700.v1.1 MD11G1136000.v1.1
prunus_persica	Prupe.6G101400_v2.0.a1 Prupe.6G101400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0059081
rosa_laevigata	RLG00000034522
rosa_multiflora	Rmu_sc0002983.1_g000040
rosa_roxburghii	Rroxscaffold_1G00021330 Rroxscaffold_3G00246950
rosa_rugosa	Rorug05G0320300
rosa_samantha	Rh1AG137800 Rh1CG219500 Rh1DG170200 Rh2BG372200 Rh2DG389100 Rh5AG385700 Rh5BG397200 Rh5CG420900 Rh5DG319900 Rh5DG413300 Rh6CG147700 Rh7AG223800 Rh7AG445600 Rh7BG218900 Rh7CG237200 Rh7DG230900 Rh7DG434500
rosa_wichuraiana	Rw5G036310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	179
AccB1I	GGYRCC	1 cut(s)	179
AciI	CCGC	2 cut(s)	121, 124
AclWI	GGATC	1 cut(s)	25
AcoI	YGGCCR	2 cut(s)	3, 118
AfaI	GTAC	1 cut(s)	181
AfiI	CCNNNNNNNGG	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	264
AlwI	GGATC	1 cut(s)	25
AoxI	GGCC	2 cut(s)	3, 118
ApeKI	GCWGC	1 cut(s)	23
Asp718I	GGTACC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	301
AsuHPI	GGTGA	2 cut(s)	241, 250
AvaII	GGWCC	1 cut(s)	301
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	10
BciT130I	CCWGG	1 cut(s)	266
BisI	GCNGC	3 cut(s)	24, 121, 124
BlsI	GCNGC	3 cut(s)	25, 122, 125
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	266
BmrI	ACTGGG	1 cut(s)	194
BmsI	GCATC	1 cut(s)	169
BmuI	ACTGGG	1 cut(s)	194
BpmI	CTGGAG	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	6
BsaWI	WCCGGW	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse1I	ACTGG	2 cut(s)	149, 200
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	6
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	2 cut(s)	149, 200
BseXI	GCAGC	1 cut(s)	10
BshFI	GGCC	2 cut(s)	5, 120
BshNI	GGYRCC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmI	GAATGC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	5, 120
Bsp143I	GATC	2 cut(s)	30, 233
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	2 cut(s)	121, 124
BspANI	GGCC	2 cut(s)	5, 120
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	181
BspPI	GGATC	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	179
BsrI	ACTGG	2 cut(s)	149, 200
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	2 cut(s)	30, 233
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	1 cut(s)	111
BstDEI	CTNAG	1 cut(s)	129
BstDSI	CCRYGG	1 cut(s)	6
BstKTI	GATC	2 cut(s)	33, 236
BstMBI	GATC	2 cut(s)	30, 233
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	10
BsuRI	GGCC	2 cut(s)	5, 120
BtgI	CCRYGG	1 cut(s)	6
BtsIMutI	CAGTG	2 cut(s)	142, 207
Cfr13I	GGNCC	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	2 cut(s)	7, 86
CviJI	RGCY	4 cut(s)	5, 84, 120, 251
CviKI_1	RGCY	4 cut(s)	5, 84, 120, 251
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	2 cut(s)	32, 235
DpnII	GATC	2 cut(s)	30, 233
EaeI	YGGCCR	2 cut(s)	3, 118
Eco130I	CCWWGG	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	2 cut(s)	10, 89
FaiI	YATR	4 cut(s)	8, 87, 138, 312
FatI	CATG	2 cut(s)	6, 85
Fnu4HI	GCNGC	3 cut(s)	24, 121, 124
Fsp4HI	GCNGC	3 cut(s)	24, 121, 124
GluI	GCNGC	3 cut(s)	24, 121, 124
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	2 cut(s)	5, 120
HapII	CCGG	1 cut(s)	304
Hin1II	CATG	2 cut(s)	10, 89
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	2 cut(s)	148, 191
HpaII	CCGG	1 cut(s)	304
HphI	GGTGA	2 cut(s)	241, 250
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	3 cut(s)	132, 153, 196
Hpy188III	TCNNGA	1 cut(s)	105
Hpy8I	GTNNAC	1 cut(s)	262
Hpy99I	CGWCG	1 cut(s)	157
HpyCH4III	ACNGT	1 cut(s)	111
HpyCH4V	TGCA	2 cut(s)	47, 314
HpyF3I	CTNAG	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	10, 89
KpnI	GGTACC	1 cut(s)	183
Kzo9I	GATC	2 cut(s)	30, 233
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	9 cut(s)	44, 47, 130, 162, 201, 213, 251, 278, 317
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	1 cut(s)	169
MaeIII	GTNAC	1 cut(s)	36
MalI	GATC	2 cut(s)	32, 235
MboI	GATC	2 cut(s)	30, 233
MboII	GAAGA	1 cut(s)	82
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	315
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	3 cut(s)	102, 176, 219
MnlI	CCTC	1 cut(s)	292
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	12
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	304
MspR9I	CCNGG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	266
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	30, 233
NlaIII	CATG	2 cut(s)	10, 89
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	1 cut(s)	36
PctI	GAATGC	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	148, 191
PkrI	GCNGC	3 cut(s)	25, 122, 125
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	301
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	3 cut(s)	24, 121, 124
Sau3AI	GATC	2 cut(s)	30, 233
Sau96I	GGNCC	1 cut(s)	301
ScrFI	CCNGG	1 cut(s)	266
SetI	ASST	1 cut(s)	190
SfaNI	GCATC	1 cut(s)	169
SinI	GGWCC	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
Sse9I	AATT	1 cut(s)	315
SsiI	CCGC	2 cut(s)	121, 124
StyD4I	CCNGG	1 cut(s)	264
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	111
TaqI	TCGA	1 cut(s)	297
TasI	AATT	1 cut(s)	315
TauI	GCSGC	2 cut(s)	123, 126
TfiI	GAWTC	2 cut(s)	148, 191
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	2 cut(s)	149, 207
TseFI	GTSAC	1 cut(s)	36
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	36
TspDTI	ATGAA	1 cut(s)	102
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	2 cut(s)	149, 207
VpaK11BI	GGWCC	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.