Prupe.6G101400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0005147
Physical Location & Seq
Forward (+)
7059983 .. 7062241
2259 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G101400.2

Sequence Viewer

Length: 309 bp
ATGATTAGCATTCTTGCTCAGGAGCGTCTTCTCGGCGCTGCACTCGGAAGCATATTCACCGGAATCGTTGTGTTTGAGCAACGCAGATGCATCTACAACTCCATTTCTGGCACCAAATCTCAATCCGTCACCCAATCTCAGGCTTACCCAATTGATCATAATAACCAGATAATGAGGATATGGGAGGACCAGATTAGAGAGCCAATATTTGGAAGCAAATCTCGTGCAGAGTTTGCGCATCTTTGGAACAAAGCTGTGGACCAGACATTTCGACCTGTGATTGAGTCTCTTAGTTCATCTGGATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.56

Weight (kDa)

7.95

Isoelectric Point (pI)

55.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 110
AccB7I CCANNNNNTGG 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 139, 209
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
Alw26I GTCTC 1 cut(s) 291
ApeKI GCWGC 1 cut(s) 38
AspLEI GCGC 2 cut(s) 38, 238
AspS9I GGNCC 2 cut(s) 187, 259
AsuHPI GGTGA 2 cut(s) 49, 121
AvaII GGWCC 2 cut(s) 187, 259
BanI GGYRCC 1 cut(s) 110
BauI CACGAG 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 297
BclI TGATCA 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 291
BfoI RGCGCY 1 cut(s) 39
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme18I GGWCC 2 cut(s) 187, 259
BmgT120I GGNCC 2 cut(s) 187, 259
BmiI GGNNCC 1 cut(s) 112
BmsI GCATC 3 cut(s) 77, 99, 247
BpiI GAAGAC 1 cut(s) 20
Bpu10I CCTNAGC 1 cut(s) 18
BsaWI WCCGGW 1 cut(s) 59
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 209
BseGI GGATG 1 cut(s) 308
BseLI CCNNNNNNNGG 2 cut(s) 139, 209
BseMII CTCAG 2 cut(s) 32, 152
BseXI GCAGC 1 cut(s) 25
BsgI GTGCAG 2 cut(s) 24, 246
BshNI GGYRCC 1 cut(s) 110
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 139, 209
BsmAI GTCTC 1 cut(s) 291
BsmI GAATGC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 154
BspCNI CTCAG 2 cut(s) 31, 151
BspLI GGNNCC 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 110
BssMI GATC 1 cut(s) 154
BssSI CACGAG 1 cut(s) 222
Bst2BI CACGAG 1 cut(s) 222
BstAPI GCANNNNNTGC 1 cut(s) 233
BstDEI CTNAG 3 cut(s) 18, 138, 290
BstF5I GGATG 1 cut(s) 308
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 2 cut(s) 38, 238
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 308
CfoI GCGC 2 cut(s) 38, 238
Cfr13I GGNCC 2 cut(s) 187, 259
CseI GACGC 1 cut(s) 14
CviJI RGCY 3 cut(s) 143, 202, 254
CviKI_1 RGCY 3 cut(s) 143, 202, 254
DdeI CTNAG 3 cut(s) 18, 138, 290
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eco47I GGWCC 2 cut(s) 187, 259
EcoT22I ATGCAT 1 cut(s) 92
FaiI YATR 3 cut(s) 53, 159, 181
FbaI TGATCA 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 39
FspI TGCGCA 1 cut(s) 237
GlaI GCGC 2 cut(s) 37, 237
GluI GCNGC 1 cut(s) 39
HaeII RGCGCY 1 cut(s) 39
HapII CCGG 1 cut(s) 60
HgaI GACGC 1 cut(s) 14
HhaI GCGC 2 cut(s) 38, 238
Hin6I GCGC 2 cut(s) 36, 236
HinP1I GCGC 2 cut(s) 36, 236
HinfI GANTC 2 cut(s) 63, 284
HpaII CCGG 1 cut(s) 60
HphI GGTGA 2 cut(s) 49, 121
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 2 cut(s) 20, 300
Hpy8I GTNNAC 1 cut(s) 259
HpyCH4V TGCA 3 cut(s) 41, 90, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 3 cut(s) 18, 138, 290
HspAI GCGC 2 cut(s) 36, 236
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 9 cut(s) 5, 73, 93, 125, 179, 203, 275, 285, 288
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 3 cut(s) 77, 99, 247
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 1 cut(s) 20
MfeI CAATTG 1 cut(s) 150
MluCI AATT 1 cut(s) 150
MlyI GAGTC 1 cut(s) 293
MnlI CCTC 2 cut(s) 168, 178
Mph1103I ATGCAT 1 cut(s) 92
MslI CAYNNNNRTG 1 cut(s) 301
MspI CCGG 1 cut(s) 60
MunI CAATTG 1 cut(s) 150
Mva1269I GAATGC 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 1 cut(s) 154
NlaIV GGNNCC 1 cut(s) 112
NmeAIII GCCGAG 1 cut(s) 12
NmuCI GTSAC 1 cut(s) 127
NsbI TGCGCA 1 cut(s) 237
NsiI ATGCAT 1 cut(s) 92
PctI GAATGC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 63
PflMI CCANNNNNTGG 1 cut(s) 209
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 2 cut(s) 187, 259
RseI CAYNNNNRTG 1 cut(s) 301
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 2 cut(s) 187, 259
SchI GAGTC 1 cut(s) 293
SetI ASST 2 cut(s) 256, 277
SfaNI GCATC 3 cut(s) 77, 99, 247
SinI GGWCC 2 cut(s) 187, 259
SmiMI CAYNNNNRTG 1 cut(s) 301
Sse9I AATT 1 cut(s) 150
SspI AATATT 1 cut(s) 207
TaqI TCGA 1 cut(s) 271
TasI AATT 1 cut(s) 150
TfiI GAWTC 1 cut(s) 63
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 285
TspGWI ACGGA 1 cut(s) 115
Van91I CCANNNNNTGG 1 cut(s) 209
VpaK11BI GGWCC 2 cut(s) 187, 259
Zsp2I ATGCAT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.