Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005147

Physical Location & Seq

Genomic Coordinates Reverse (-)

18757096 .. 18758167

Gene Structure 1072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG218900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGATTAAGAGAATAAGTATTATGCACAAATATGTATGCCCGATTACACTGCTGGAGATTCTCGCCCTCCTTCTCCCTCATGGACAAGTAGCCGTTACTGGAAGAAGAACCGGGTGGCGACGATCCGATAGTAATCAGTGTGGCCCTGGCCTCGTCCTCGTCGCCTTTGGACGGCCAGTCGGTCTCGGAGATGTGAACCAGAAGCGTCTTGTAGCCGAGGGATCCGAGAATCGCTTGGTCAAGCTTTTGTTGGATCTGATGCTCTTCGATCTTCGTCAAGTTCAAATCCATGAGATTTTTCCTGCTCTGTTTCAAATCGTTAACTTGAATTTCCCTGAGTTTCAGGCTATGCAGAAAAACCGGTCGAAGATCCAAGGCGGCGTGAAATTCAACAACTGGAAAACTCGCTTCGGCGTGAAGGTAGCCATGAAGACGTCGTTTGCTGCCTCCACGTCCTCGGGAGTCCTCGTGAGGGATTCAGTACCAATGGCCTTGGCTCCATGCAGTTGGGTGAATTTCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

19.42

Weight (kDa)

10.39

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28430
fragaria_vesca	FvH4_3g32290
malus_domestica	MD03G1117700.v1.1 MD11G1136000.v1.1
prunus_persica	Prupe.6G101400_v2.0.a1 Prupe.6G101400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0059081
rosa_laevigata	RLG00000034522
rosa_multiflora	Rmu_sc0002983.1_g000040
rosa_roxburghii	Rroxscaffold_1G00021330 Rroxscaffold_3G00246950
rosa_rugosa	Rorug05G0320300
rosa_samantha	Rh1AG137800 Rh1CG219500 Rh1DG170200 Rh2BG372200 Rh2DG389100 Rh5AG385700 Rh5BG397200 Rh5CG420900 Rh5DG319900 Rh5DG413300 Rh6CG147700 Rh7AG223800 Rh7AG445600 Rh7BG218900 Rh7CG237200 Rh7DG230900 Rh7DG434500
rosa_wichuraiana	Rw5G036310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	437
AciI	CCGC	1 cut(s)	378
AclWI	GGATC	5 cut(s)	117, 216, 229, 261, 364
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	3 cut(s)	328, 386, 514
AcyI	GRCGYC	1 cut(s)	434
AfaI	GTAC	1 cut(s)	483
AfiI	CCNNNNNNNGG	2 cut(s)	171, 472
AgeI	ACCGGT	1 cut(s)	360
AgsI	TTSAA	4 cut(s)	284, 314, 328, 391
AhdI	GACNNNNNGTC	1 cut(s)	176
AjiI	CACGTC	1 cut(s)	453
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	5 cut(s)	117, 216, 229, 261, 364
Ama87I	CYCGRG	1 cut(s)	457
AoxI	GGCC	4 cut(s)	142, 148, 173, 489
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	3 cut(s)	328, 386, 514
AsiGI	ACCGGT	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	523
AvaI	CYCGRG	1 cut(s)	457
BamHI	GGATCC	1 cut(s)	221
BauI	CACGAG	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	437
BbvI	GCAGC	1 cut(s)	430
BceAI	ACGGC	2 cut(s)	77, 188
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciT130I	CCWGG	1 cut(s)	147
BcnI	CCSGG	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	188
BisI	GCNGC	2 cut(s)	379, 444
BlsI	GCNGC	2 cut(s)	380, 445
Bme1390I	CCNGG	2 cut(s)	112, 147
BmeRI	GACNNNNNGTC	1 cut(s)	176
BmeT110I	CYCGRG	1 cut(s)	457
BmgBI	CACGTC	1 cut(s)	453
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	2 cut(s)	223, 498
BmrFI	CCNGG	2 cut(s)	112, 147
BmsI	GCATC	1 cut(s)	249
BpiI	GAAGAC	1 cut(s)	437
BpmI	CTGGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	112
BsaBI	GATNNNNATC	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	434
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	5 cut(s)	145, 216, 373, 456, 492
BsaWI	WCCGGW	1 cut(s)	360
BsaXI	ACNNNNNCTCC	2 cut(s)	453, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	171, 472
Bse118I	RCCGGY	1 cut(s)	360
Bse1I	ACTGG	3 cut(s)	103, 176, 401
Bse8I	GATNNNNATC	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	5 cut(s)	145, 216, 373, 456, 492
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	2 cut(s)	171, 472
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	3 cut(s)	103, 176, 401
BseXI	GCAGC	1 cut(s)	430
Bsh1285I	CGRYCG	1 cut(s)	365
BshFI	GGCC	4 cut(s)	144, 150, 175, 491
BshTI	ACCGGT	1 cut(s)	360
BsiEI	CGRYCG	1 cut(s)	365
BsiHKCI	CYCGRG	1 cut(s)	457
BsiSI	CCGG	2 cut(s)	111, 361
BslI	CCNNNNNNNGG	2 cut(s)	171, 472
BsmAI	GTCTC	1 cut(s)	188
BsnI	GGCC	4 cut(s)	144, 150, 175, 491
Bso31I	GGTCTC	1 cut(s)	188
BsoBI	CYCGRG	1 cut(s)	457
Bsp143I	GATC	5 cut(s)	122, 221, 253, 268, 369
BspACI	CCGC	1 cut(s)	378
BspANI	GGCC	4 cut(s)	144, 150, 175, 491
BspCNI	CTCAG	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	223, 498
BspPI	GGATC	5 cut(s)	117, 216, 229, 261, 364
BspQI	GCTCTTC	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	188
BsrFI	RCCGGY	1 cut(s)	360
BsrI	ACTGG	3 cut(s)	103, 176, 401
BssAI	RCCGGY	1 cut(s)	360
BssECI	CCNNGG	5 cut(s)	145, 216, 373, 456, 492
BssMI	GATC	5 cut(s)	122, 221, 253, 268, 369
BssNI	GRCGYC	1 cut(s)	434
BssSI	CACGAG	1 cut(s)	467
BssT1I	CCWWGG	2 cut(s)	373, 492
Bst2BI	CACGAG	1 cut(s)	467
Bst2UI	CCWGG	1 cut(s)	147
Bst6I	CTCTTC	1 cut(s)	269
BstACI	GRCGYC	1 cut(s)	434
BstDEI	CTNAG	1 cut(s)	336
BstKTI	GATC	5 cut(s)	125, 224, 256, 271, 372
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	5 cut(s)	122, 221, 253, 268, 369
BstMCI	CGRYCG	1 cut(s)	365
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	2 cut(s)	110, 145
BstV1I	GCAGC	1 cut(s)	430
BstV2I	GAAGAC	1 cut(s)	437
BstX2I	RGATCY	3 cut(s)	221, 253, 369
BstXI	CCANNNNNNTGG	1 cut(s)	507
BstYI	RGATCY	3 cut(s)	221, 253, 369
BsuRI	GGCC	4 cut(s)	144, 150, 175, 491
BtrI	CACGTC	1 cut(s)	453
BtsI	GCAGTG	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	47, 143
Cfr10I	RCCGGY	1 cut(s)	360
Cfr13I	GGNCC	1 cut(s)	143
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	482
CspAI	ACCGGT	1 cut(s)	360
CviAII	CATG	4 cut(s)	80, 290, 427, 501
CviQI	GTAC	1 cut(s)	482
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	5 cut(s)	124, 223, 255, 270, 371
DpnII	GATC	5 cut(s)	122, 221, 253, 268, 369
DriI	GACNNNNNGTC	1 cut(s)	176
EaeI	YGGCCR	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	269
Eam1105I	GACNNNNNGTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	269
Eco130I	CCWWGG	2 cut(s)	373, 492
Eco31I	GGTCTC	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	2 cut(s)	373, 492
ErhI	CCWWGG	2 cut(s)	373, 492
FaeI	CATG	4 cut(s)	83, 293, 430, 504
FaiI	YATR	9 cut(s)	23, 33, 37, 81, 291, 350, 428, 502, 523
FatI	CATG	4 cut(s)	79, 289, 426, 500
Fnu4HI	GCNGC	2 cut(s)	379, 444
Fsp4HI	GCNGC	2 cut(s)	379, 444
GluI	GCNGC	2 cut(s)	379, 444
GsuI	CTGGAG	1 cut(s)	74
HaeIII	GGCC	4 cut(s)	144, 150, 175, 491
HapII	CCGG	2 cut(s)	111, 361
HgaI	GACGC	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	434
Hin1II	CATG	4 cut(s)	83, 293, 430, 504
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	4 cut(s)	58, 229, 462, 476
HpaI	GTTAAC	1 cut(s)	322
HpaII	CCGG	2 cut(s)	111, 361
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	2 cut(s)	196, 322
Hpy188I	TCNGA	4 cut(s)	127, 188, 226, 258
Hpy188III	TCNNGA	2 cut(s)	459, 469
Hpy8I	GTNNAC	2 cut(s)	196, 322
Hpy99I	CGWCG	3 cut(s)	123, 164, 439
HpyAV	CCTTC	2 cut(s)	80, 412
HpyCH4IV	ACGT	2 cut(s)	434, 452
HpyCH4V	TGCA	3 cut(s)	25, 352, 504
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	2 cut(s)	434, 452
Hsp92I	GRCGYC	1 cut(s)	434
Hsp92II	CATG	4 cut(s)	83, 293, 430, 504
KspAI	GTTAAC	1 cut(s)	322
Kzo9I	GATC	5 cut(s)	122, 221, 253, 268, 369
LguI	GCTCTTC	1 cut(s)	269
LmnI	GCTCC	1 cut(s)	502
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	1 cut(s)	249
MaeII	ACGT	2 cut(s)	434, 452
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	5 cut(s)	124, 223, 255, 270, 371
MboI	GATC	5 cut(s)	122, 221, 253, 268, 369
MboII	GAAGA	6 cut(s)	114, 117, 256, 263, 379, 442
MflI	RGATCY	3 cut(s)	221, 253, 369
MluCI	AATT	3 cut(s)	328, 386, 514
MlyI	GAGTC	1 cut(s)	471
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	9 cut(s)	77, 87, 161, 167, 211, 457, 465, 466, 476
MseI	TTAA	2 cut(s)	6, 321
MslI	CAYNNNNRTG	1 cut(s)	30
MspI	CCGG	2 cut(s)	111, 361
MspR9I	CCNGG	2 cut(s)	112, 147
MvaI	CCWGG	1 cut(s)	147
NciI	CCSGG	1 cut(s)	112
NdeII	GATC	5 cut(s)	122, 221, 253, 268, 369
NlaIII	CATG	4 cut(s)	83, 293, 430, 504
NlaIV	GGNNCC	2 cut(s)	223, 498
NmeAIII	GCCGAG	1 cut(s)	241
PciSI	GCTCTTC	1 cut(s)	269
PfeI	GAWTC	3 cut(s)	58, 229, 476
PinAI	ACCGGT	1 cut(s)	360
PkrI	GCNGC	2 cut(s)	380, 445
PleI	GAGTC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	223, 498
PspPI	GGNCC	1 cut(s)	143
PsuI	RGATCY	3 cut(s)	221, 253, 369
RsaI	GTAC	1 cut(s)	483
RsaNI	GTAC	1 cut(s)	482
RseI	CAYNNNNRTG	1 cut(s)	30
SapI	GCTCTTC	1 cut(s)	269
SaqAI	TTAA	2 cut(s)	6, 321
SatI	GCNGC	2 cut(s)	379, 444
Sau3AI	GATC	5 cut(s)	122, 221, 253, 268, 369
Sau96I	GGNCC	1 cut(s)	143
SchI	GAGTC	1 cut(s)	471
ScrFI	CCNGG	2 cut(s)	112, 147
SetI	ASST	4 cut(s)	246, 423, 437, 455
SfaNI	GCATC	1 cut(s)	249
SmiMI	CAYNNNNRTG	1 cut(s)	30
Sse9I	AATT	3 cut(s)	328, 386, 514
SsiI	CCGC	1 cut(s)	378
StyD4I	CCNGG	2 cut(s)	110, 145
StyI	CCWWGG	2 cut(s)	373, 492
TaiI	ACGT	2 cut(s)	437, 455
TaqI	TCGA	2 cut(s)	267, 365
TaqII	GACCGA	1 cut(s)	170
TasI	AATT	3 cut(s)	328, 386, 514
TauI	GCSGC	1 cut(s)	381
TfiI	GAWTC	3 cut(s)	58, 229, 476
Tru1I	TTAA	2 cut(s)	6, 321
Tru9I	TTAA	2 cut(s)	6, 321
TscAI	CASTG	2 cut(s)	54, 143
TseI	GCWGC	1 cut(s)	443
TspDTI	ATGAA	1 cut(s)	443
TspRI	CASTG	2 cut(s)	54, 143
XapI	RAATTY	3 cut(s)	328, 386, 514
ZraI	GACGTC	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.