Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005147

Physical Location & Seq

Genomic Coordinates Reverse (-)

40250847 .. 40251308

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00246950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGAGGGAGTAGCGTTGAAAGGAGAAATTATAGCTTTGCATAGGTGGTTCATCGTCTTCATCTTCTTCAAGCTTGTCACCACTACCGATGGAGGGGTTACACGAGTTGGGTCCGCAAAAGAGCAATGGAGAAGCTATGAACTAAATTTGATGATGCGGGACGATCTATTGGGCGCGGCACTCGGAAGCATACTCACCGGAATCCGACGAAGCATCTACAACTCCATTTACGGTACCAAACCCGAATCCGACCCGGTGGCGGTGTTCTTATTGTTCGGTGTGGGTGAGATCGGTGAGAGCGAGGGCGGTTGGCGGCCTCGCAGATGTGAATCGAAGCTTCTTGTAGTTGAGAGATTCGAGGGCGGCGTAGACGACATCGATTTGGGCAGAGAGCATGTTGTTGCGGTGGAGATTGGTCGCCGGATCCGGCGAACCGGTGCTTTGGGTCGGAAGAGGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

17.11

Weight (kDa)

9.24

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28430
fragaria_vesca	FvH4_3g32290
malus_domestica	MD03G1117700.v1.1 MD11G1136000.v1.1
prunus_persica	Prupe.6G101400_v2.0.a1 Prupe.6G101400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0059081
rosa_laevigata	RLG00000034522
rosa_multiflora	Rmu_sc0002983.1_g000040
rosa_roxburghii	Rroxscaffold_1G00021330 Rroxscaffold_3G00246950
rosa_rugosa	Rorug05G0320300
rosa_samantha	Rh1AG137800 Rh1CG219500 Rh1DG170200 Rh2BG372200 Rh2DG389100 Rh5AG385700 Rh5BG397200 Rh5CG420900 Rh5DG319900 Rh5DG413300 Rh6CG147700 Rh7AG223800 Rh7AG445600 Rh7BG218900 Rh7CG237200 Rh7DG230900 Rh7DG434500
rosa_wichuraiana	Rw5G036310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	233
AccB1I	GGYRCC	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	1 cut(s)	176
AciI	CCGC	8 cut(s)	114, 157, 176, 260, 306, 313, 363, 404
AclWI	GGATC	2 cut(s)	418, 431
AcsI	RAATTY	1 cut(s)	145
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	2 cut(s)	93, 259
AgeI	ACCGGT	1 cut(s)	434
AgsI	TTSAA	2 cut(s)	19, 70
AluBI	AGCT	4 cut(s)	35, 73, 135, 337
AluI	AGCT	4 cut(s)	35, 73, 135, 337
AlwI	GGATC	2 cut(s)	418, 431
AoxI	GGCC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	145
AsiGI	ACCGGT	1 cut(s)	434
Asp718I	GGTACC	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	111
AsuC2I	CCSGG	1 cut(s)	254
AsuHPI	GGTGA	4 cut(s)	70, 187, 296, 305
AvaII	GGWCC	1 cut(s)	111
BamHI	GGATCC	1 cut(s)	423
BanI	GGYRCC	1 cut(s)	233
BauI	CACGAG	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	49
BccI	CCATC	1 cut(s)	83
BcnI	CCSGG	1 cut(s)	254
BisI	GCNGC	3 cut(s)	177, 314, 364
BlsI	GCNGC	3 cut(s)	178, 315, 365
Bme1390I	CCNGG	1 cut(s)	254
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	3 cut(s)	112, 235, 425
BmrFI	CCNGG	1 cut(s)	254
BmsI	GCATC	2 cut(s)	144, 222
BpiI	GAAGAC	1 cut(s)	49
BpuMI	CCSGG	1 cut(s)	254
Bsa29I	ATCGAT	1 cut(s)	378
BsaBI	GATNNNNATC	1 cut(s)	328
BsaWI	WCCGGW	2 cut(s)	197, 434
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 259
Bse118I	RCCGGY	1 cut(s)	434
Bse3DI	GCAATG	1 cut(s)	131
Bse8I	GATNNNNATC	1 cut(s)	328
BseCI	ATCGAT	1 cut(s)	378
BseGI	GGATG	1 cut(s)	462
BseJI	GATNNNNATC	1 cut(s)	328
BseLI	CCNNNNNNNGG	2 cut(s)	93, 259
BseMI	GCAATG	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	316
BshNI	GGYRCC	1 cut(s)	233
BshTI	ACCGGT	1 cut(s)	434
BshVI	ATCGAT	1 cut(s)	378
BsiSI	CCGG	5 cut(s)	198, 254, 421, 427, 435
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	2 cut(s)	93, 259
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	316
Bsp143I	GATC	3 cut(s)	163, 288, 423
BspACI	CCGC	8 cut(s)	114, 157, 176, 260, 306, 313, 363, 404
BspANI	GGCC	1 cut(s)	316
BspDI	ATCGAT	1 cut(s)	378
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	3 cut(s)	112, 235, 425
BspPI	GGATC	2 cut(s)	418, 431
BspT107I	GGYRCC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	434
BssAI	RCCGGY	1 cut(s)	434
BssMI	GATC	3 cut(s)	163, 288, 423
BssSI	CACGAG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	1 cut(s)	446
BstF5I	GGATG	1 cut(s)	462
BstFNI	CGCG	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	3 cut(s)	166, 291, 426
BstMBI	GATC	3 cut(s)	163, 288, 423
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	252
BstUI	CGCG	1 cut(s)	176
BstV2I	GAAGAC	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	423
BstYI	RGATCY	1 cut(s)	423
Bsu15I	ATCGAT	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	316
BsuTUI	ATCGAT	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	462
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	1 cut(s)	111
ClaI	ATCGAT	1 cut(s)	378
Csp6I	GTAC	1 cut(s)	234
CspAI	ACCGGT	1 cut(s)	434
CviAII	CATG	1 cut(s)	395
CviJI	RGCY	5 cut(s)	35, 73, 135, 316, 337
CviKI_1	RGCY	5 cut(s)	35, 73, 135, 316, 337
CviQI	GTAC	1 cut(s)	234
DpnI	GATC	3 cut(s)	165, 290, 425
DpnII	GATC	3 cut(s)	163, 288, 423
Eam1104I	CTCTTC	1 cut(s)	446
EarI	CTCTTC	1 cut(s)	446
Eco47I	GGWCC	1 cut(s)	111
FaeI	CATG	1 cut(s)	398
FaiI	YATR	5 cut(s)	32, 42, 138, 191, 396
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	1 cut(s)	394
FauI	CCCGC	1 cut(s)	150
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	3 cut(s)	177, 314, 364
Fsp4HI	GCNGC	3 cut(s)	177, 314, 364
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	3 cut(s)	177, 314, 364
HaeIII	GGCC	1 cut(s)	316
HapII	CCGG	5 cut(s)	198, 254, 421, 427, 435
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	1 cut(s)	398
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HindIII	AAGCTT	2 cut(s)	71, 335
HinfI	GANTC	4 cut(s)	201, 245, 329, 354
HpaII	CCGG	5 cut(s)	198, 254, 421, 427, 435
HphI	GGTGA	4 cut(s)	70, 187, 296, 305
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	4 cut(s)	185, 206, 250, 450
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	1 cut(s)	210
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4V	TGCA	1 cut(s)	40
Hsp92II	CATG	1 cut(s)	398
HspAI	GCGC	1 cut(s)	174
KpnI	GGTACC	1 cut(s)	237
Kzo9I	GATC	3 cut(s)	163, 288, 423
LpnPI	CCDG	5 cut(s)	211, 267, 434, 440, 448
LweI	GCATC	2 cut(s)	144, 222
MaeIII	GTNAC	2 cut(s)	76, 97
MalI	GATC	3 cut(s)	165, 290, 425
MboI	GATC	3 cut(s)	163, 288, 423
MboII	GAAGA	3 cut(s)	49, 55, 58
MflI	RGATCY	1 cut(s)	423
MluCI	AATT	2 cut(s)	27, 145
MmeI	TCCRAC	3 cut(s)	229, 273, 428
MnlI	CCTC	5 cut(s)	86, 295, 327, 352, 447
MspI	CCGG	5 cut(s)	198, 254, 421, 427, 435
MspR9I	CCNGG	1 cut(s)	254
MvnI	CGCG	1 cut(s)	176
NciI	CCSGG	1 cut(s)	254
NdeII	GATC	3 cut(s)	163, 288, 423
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	3 cut(s)	112, 235, 425
NmuCI	GTSAC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	2 cut(s)	297, 363
PfeI	GAWTC	4 cut(s)	201, 245, 329, 354
PinAI	ACCGGT	1 cut(s)	434
PkrI	GCNGC	3 cut(s)	178, 315, 365
PspN4I	GGNNCC	3 cut(s)	112, 235, 425
PspPI	GGNCC	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	423
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
SatI	GCNGC	3 cut(s)	177, 314, 364
Sau3AI	GATC	3 cut(s)	163, 288, 423
Sau96I	GGNCC	1 cut(s)	111
ScrFI	CCNGG	1 cut(s)	254
SetI	ASST	5 cut(s)	37, 47, 75, 137, 339
SfaNI	GCATC	2 cut(s)	144, 222
SinI	GGWCC	1 cut(s)	111
Sse9I	AATT	2 cut(s)	27, 145
SsiI	CCGC	8 cut(s)	114, 157, 176, 260, 306, 313, 363, 404
StyD4I	CCNGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	233
TaqI	TCGA	3 cut(s)	332, 357, 378
TasI	AATT	2 cut(s)	27, 145
TauI	GCSGC	3 cut(s)	179, 316, 366
TfiI	GAWTC	4 cut(s)	201, 245, 329, 354
TseFI	GTSAC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	3 cut(s)	40, 49, 153
VpaK11BI	GGWCC	1 cut(s)	111
XapI	RAATTY	1 cut(s)	145
XceI	RCATGY	1 cut(s)	398
XmiI	GTMKAC	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.