Rh2DG389100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
56350435 .. 56379234
28800 bp
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UTR
Exon/CDS
Intron
Rh2DG389100.1

Sequence Viewer

Length: 204 bp
ATGGCTCATCACCCGCATGTCCTACAAATTAGTGATATATCCTATAATTCAACTCAAATAAAATTTCATACCTCCTTAAATAGAACATCCTCAGACTCCTCTAGACTCAACTCTGCAAGAAAACAAAGTATGGGTGAGATCAGTGAGAGCGAAGAGGTGGTCGACGGCCTCGGAGATGTGAACCGGAAGCTTCTCGTATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.44

Weight (kDa)

6.38

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 162
AciI CCGC 1 cut(s) 14
AcsI RAATTY 1 cut(s) 62
AgsI TTSAA 1 cut(s) 51
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
AoxI GGCC 1 cut(s) 166
ApoI RAATTY 1 cut(s) 62
ArsI GACNNNNNNTTYG 2 cut(s) 144, 176
AsuHPI GGTGA 1 cut(s) 146
BceAI ACGGC 1 cut(s) 181
BfaI CTAG 2 cut(s) 102, 202
BsaJI CCNNGG 1 cut(s) 169
BsaWI WCCGGW 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 1 cut(s) 86
BseMII CTCAG 1 cut(s) 105
BseRI GAGGAG 1 cut(s) 88
BshFI GGCC 1 cut(s) 168
BsiSI CCGG 1 cut(s) 184
BsnI GGCC 1 cut(s) 168
Bsp143I GATC 1 cut(s) 138
BspACI CCGC 1 cut(s) 14
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 1 cut(s) 138
Bst6I CTCTTC 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 91
BstF5I GGATG 1 cut(s) 86
BstKTI GATC 1 cut(s) 141
BstMBI GATC 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 20
BsuRI GGCC 1 cut(s) 168
BtsCI GGATG 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 148
CviAII CATG 1 cut(s) 17
CviJI RGCY 3 cut(s) 5, 168, 190
CviKI_1 RGCY 3 cut(s) 5, 168, 190
DdeI CTNAG 1 cut(s) 91
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
FaeI CATG 1 cut(s) 20
FaiI YATR 5 cut(s) 18, 38, 45, 69, 131
FatI CATG 1 cut(s) 16
FauI CCCGC 1 cut(s) 21
FblI GTMKAC 1 cut(s) 162
FokI GGATG 1 cut(s) 73
FspBI CTAG 2 cut(s) 102, 202
HaeIII GGCC 1 cut(s) 168
HapII CCGG 1 cut(s) 184
Hin1II CATG 1 cut(s) 20
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 2 cut(s) 95, 105
HpaII CCGG 1 cut(s) 184
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 2 cut(s) 163, 181
Hpy188I TCNGA 2 cut(s) 94, 173
Hpy188III TCNNGA 1 cut(s) 102
Hpy8I GTNNAC 2 cut(s) 163, 181
Hpy99I CGWCG 1 cut(s) 167
HpyCH4V TGCA 1 cut(s) 116
HpyF3I CTNAG 1 cut(s) 91
Hsp92II CATG 1 cut(s) 20
Kzo9I GATC 1 cut(s) 138
LpnPI CCDG 1 cut(s) 197
MaeI CTAG 2 cut(s) 102, 202
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 1 cut(s) 164
MluCI AATT 3 cut(s) 27, 46, 62
MlyI GAGTC 2 cut(s) 89, 99
MnlI CCTC 5 cut(s) 82, 100, 109, 148, 179
MseI TTAA 1 cut(s) 77
MslI CAYNNNNRTG 1 cut(s) 15
MspI CCGG 1 cut(s) 184
NdeII GATC 1 cut(s) 138
NlaIII CATG 1 cut(s) 20
NspI RCATGY 1 cut(s) 20
PleI GAGTC 2 cut(s) 89, 99
PpsI GAGTC 2 cut(s) 89, 99
RseI CAYNNNNRTG 1 cut(s) 15
SalI GTCGAC 1 cut(s) 161
SaqAI TTAA 1 cut(s) 77
Sau3AI GATC 1 cut(s) 138
SchI GAGTC 2 cut(s) 89, 99
SetI ASST 3 cut(s) 74, 159, 192
SgeI CNNG 6 cut(s) 25, 29, 114, 129, 182, 196
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 3 cut(s) 27, 46, 62
SsiI CCGC 1 cut(s) 14
SspMI CTAG 2 cut(s) 102, 202
TaqI TCGA 1 cut(s) 162
TasI AATT 3 cut(s) 27, 46, 62
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TscAI CASTG 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 56
TspRI CASTG 1 cut(s) 148
XapI RAATTY 1 cut(s) 62
XbaI TCTAGA 1 cut(s) 101
XceI RCATGY 1 cut(s) 20
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 2 cut(s) 102, 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.