Rh7AG223800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005147
Physical Location & Seq
Reverse (-)
21022493 .. 21023274
782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG223800.1

Sequence Viewer

Length: 306 bp
ATGCACAAATATGTATGCCCGATTACACTGCTGGAGATTCTCGCCCTCCTTCTCTCTCATGGACAAGTAGCCGTTACTGGAAGAAGAACCGGGTGGCGACGATCCGATAGTAATCAGTGTGGCTCTGGCCTCGTCCTCGTCGCCTTTGGACGGCCAGCCGGTCTCGGAGATGTGAACCAGAAGCTTCTTGTAGCCGAGGGATCTGAGAATCGCTTGGTCAAGCTTTTGTTGGATCTGATGCTCTTCGATCTTCGTCAAGTTCAAATCCATGAGATTTTTCTGCTGTGTTTCAAATCGTTAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.22

Weight (kDa)

9.02

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 96, 208, 240
AcoI YGGCCR 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 2 cut(s) 263, 292
AluBI AGCT 2 cut(s) 184, 223
AluI AGCT 2 cut(s) 184, 223
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 3 cut(s) 96, 208, 240
AoxI GGCC 2 cut(s) 127, 152
AsuC2I CCSGG 1 cut(s) 91
BceAI ACGGC 2 cut(s) 56, 167
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 1 cut(s) 228
BpmI CTGGAG 1 cut(s) 53
BpuMI CCSGG 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 82
Bse8I GATNNNNATC 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 195
BseJI GATNNNNATC 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 82
BshFI GGCC 2 cut(s) 129, 154
BsiSI CCGG 2 cut(s) 90, 159
BslI CCNNNNNNNGG 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 167
BsnI GGCC 2 cut(s) 129, 154
Bso31I GGTCTC 1 cut(s) 167
Bsp143I GATC 4 cut(s) 101, 200, 232, 247
BspANI GGCC 2 cut(s) 129, 154
BspCNI CTCAG 1 cut(s) 196
BspPI GGATC 3 cut(s) 96, 208, 240
BspQI GCTCTTC 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 1 cut(s) 82
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 4 cut(s) 101, 200, 232, 247
Bst6I CTCTTC 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 204
BstKTI GATC 4 cut(s) 104, 203, 235, 250
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 4 cut(s) 101, 200, 232, 247
BstSCI CCNGG 1 cut(s) 89
BstX2I RGATCY 2 cut(s) 200, 232
BstYI RGATCY 2 cut(s) 200, 232
BsuRI GGCC 2 cut(s) 129, 154
BtsI GCAGTG 1 cut(s) 26
BtsIMutI CAGTG 2 cut(s) 26, 122
Cac8I GCNNGC 1 cut(s) 156
Cfr10I RCCGGY 1 cut(s) 158
CviAII CATG 2 cut(s) 59, 269
CviJI RGCY 8 cut(s) 71, 123, 129, 154, 158, 184, 194, 223
CviKI_1 RGCY 8 cut(s) 71, 123, 129, 154, 158, 184, 194, 223
DdeI CTNAG 1 cut(s) 204
DpnI GATC 4 cut(s) 103, 202, 234, 249
DpnII GATC 4 cut(s) 101, 200, 232, 247
EaeI YGGCCR 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 167
FaeI CATG 2 cut(s) 62, 272
FaiI YATR 4 cut(s) 12, 16, 60, 270
FatI CATG 2 cut(s) 58, 268
GsuI CTGGAG 1 cut(s) 53
HaeIII GGCC 2 cut(s) 129, 154
HapII CCGG 2 cut(s) 90, 159
Hin1II CATG 2 cut(s) 62, 272
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HindIII AAGCTT 2 cut(s) 182, 221
HinfI GANTC 2 cut(s) 37, 208
HpaI GTTAAC 1 cut(s) 300
HpaII CCGG 2 cut(s) 90, 159
Hpy166II GTNNAC 2 cut(s) 175, 300
Hpy188I TCNGA 4 cut(s) 106, 167, 205, 237
Hpy8I GTNNAC 2 cut(s) 175, 300
Hpy99I CGWCG 2 cut(s) 102, 143
HpyAV CCTTC 1 cut(s) 59
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 204
Hsp92II CATG 2 cut(s) 62, 272
KspAI GTTAAC 1 cut(s) 300
Kzo9I GATC 4 cut(s) 101, 200, 232, 247
LguI GCTCTTC 1 cut(s) 248
LpnPI CCDG 7 cut(s) 17, 63, 103, 111, 168, 172, 191
LweI GCATC 1 cut(s) 228
MaeIII GTNAC 1 cut(s) 73
MalI GATC 4 cut(s) 103, 202, 234, 249
MboI GATC 4 cut(s) 101, 200, 232, 247
MboII GAAGA 4 cut(s) 93, 96, 235, 242
MflI RGATCY 2 cut(s) 200, 232
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 4 cut(s) 56, 140, 146, 190
MseI TTAA 1 cut(s) 299
MslI CAYNNNNRTG 1 cut(s) 9
MspI CCGG 2 cut(s) 90, 159
MspR9I CCNGG 1 cut(s) 91
NciI CCSGG 1 cut(s) 91
NdeII GATC 4 cut(s) 101, 200, 232, 247
NlaIII CATG 2 cut(s) 62, 272
NmeAIII GCCGAG 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 248
PfeI GAWTC 2 cut(s) 37, 208
PsuI RGATCY 2 cut(s) 200, 232
RseI CAYNNNNRTG 1 cut(s) 9
SapI GCTCTTC 1 cut(s) 248
SaqAI TTAA 1 cut(s) 299
Sau3AI GATC 4 cut(s) 101, 200, 232, 247
ScrFI CCNGG 1 cut(s) 91
SetI ASST 2 cut(s) 186, 225
SfaNI GCATC 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 89
TaqI TCGA 1 cut(s) 246
TfiI GAWTC 2 cut(s) 37, 208
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TscAI CASTG 2 cut(s) 33, 122
TspRI CASTG 2 cut(s) 33, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.