Rh5BG397200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0005147
Physical Location & Seq
Reverse (-)
64303296 .. 64305140
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG397200.1

Sequence Viewer

Length: 255 bp
ATGATGATGATGATGCAGGAGCGTCTATTGGGCGCCGCACTCGGAAGCATACTCACCGGAATCGTTGTCTTTGAGCAGCGACGAAGCATCTACAACTCCATTTCTGGTACCCAACCTGAATCCGTTGCCCGATCTCAGATGAGAGAGCCCATATTTGGAAGGAAATATCGCTCAGAGTTTGCGCACCTCTGGAACAAGGCTGTGGACCAGACATTTCGACCAGTGATTGAGTCCCTTAGTTCATCTGGATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.6

Weight (kDa)

9.97

Isoelectric Point (pI)

65.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 183
Acc65I GGTACC 1 cut(s) 107
AccB1I GGYRCC 2 cut(s) 32, 107
AciI CCGC 1 cut(s) 36
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 155
ApeKI GCWGC 1 cut(s) 76
Asp718I GGTACC 1 cut(s) 107
AspLEI GCGC 2 cut(s) 35, 184
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 46
AvaII GGWCC 1 cut(s) 205
BanI GGYRCC 2 cut(s) 32, 107
BanII GRGCYC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 88
BccI CCATC 1 cut(s) 243
BfoI RGCGCY 1 cut(s) 36
BisI GCNGC 2 cut(s) 36, 77
BlsI GCNGC 2 cut(s) 37, 78
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 2 cut(s) 34, 109
BmsI GCATC 2 cut(s) 3, 96
BsaHI GRCGYC 1 cut(s) 33
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 221
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMII CTCAG 2 cut(s) 149, 186
BseNI ACTGG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 88
BshNI GGYRCC 2 cut(s) 32, 107
BsiSI CCGG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 1 cut(s) 131
BspACI CCGC 1 cut(s) 36
BspCNI CTCAG 2 cut(s) 148, 185
BspLI GGNNCC 2 cut(s) 34, 109
BspT107I GGYRCC 2 cut(s) 32, 107
BsrI ACTGG 1 cut(s) 221
BssMI GATC 1 cut(s) 131
BssNI GRCGYC 1 cut(s) 33
BstACI GRCGYC 1 cut(s) 33
BstDEI CTNAG 3 cut(s) 135, 172, 236
BstF5I GGATG 1 cut(s) 254
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 2 cut(s) 35, 184
BstKTI GATC 1 cut(s) 134
BstMBI GATC 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 88
BtsCI GGATG 1 cut(s) 254
BtsIMutI CAGTG 1 cut(s) 228
CfoI GCGC 2 cut(s) 35, 184
Cfr13I GGNCC 1 cut(s) 205
CseI GACGC 1 cut(s) 11
Csp6I GTAC 1 cut(s) 108
CviJI RGCY 2 cut(s) 148, 200
CviKI_1 RGCY 2 cut(s) 148, 200
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 3 cut(s) 135, 172, 236
DinI GGCGCC 1 cut(s) 34
DpnI GATC 1 cut(s) 133
DpnII GATC 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 150
EgeI GGCGCC 1 cut(s) 34
EheI GGCGCC 1 cut(s) 34
FaiI YATR 2 cut(s) 50, 152
FaqI GGGAC 1 cut(s) 217
Fnu4HI GCNGC 2 cut(s) 36, 77
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 2 cut(s) 36, 77
FspI TGCGCA 1 cut(s) 183
GlaI GCGC 2 cut(s) 34, 183
GluI GCNGC 2 cut(s) 36, 77
HaeII RGCGCY 1 cut(s) 36
HapII CCGG 1 cut(s) 57
HgaI GACGC 1 cut(s) 11
HhaI GCGC 2 cut(s) 35, 184
Hin1I GRCGYC 1 cut(s) 33
Hin6I GCGC 2 cut(s) 33, 182
HinP1I GCGC 2 cut(s) 33, 182
HinfI GANTC 3 cut(s) 60, 119, 230
HpaII CCGG 1 cut(s) 57
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 3 cut(s) 44, 138, 175
Hpy188III TCNNGA 2 cut(s) 190, 246
Hpy8I GTNNAC 1 cut(s) 205
Hpy99I CGWCG 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 153
HpyCH4V TGCA 1 cut(s) 16
HpyF3I CTNAG 3 cut(s) 135, 172, 236
Hsp92I GRCGYC 1 cut(s) 33
HspAI GCGC 2 cut(s) 33, 182
KasI GGCGCC 1 cut(s) 32
KpnI GGTACC 1 cut(s) 111
Kzo9I GATC 1 cut(s) 131
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 8 cut(s) 2, 70, 90, 129, 175, 221, 231, 234
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 2 cut(s) 3, 96
MalI GATC 1 cut(s) 133
MboI GATC 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 150
Mly113I GGCGCC 1 cut(s) 33
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 1 cut(s) 197
MslI CAYNNNNRTG 1 cut(s) 247
MspI CCGG 1 cut(s) 57
NarI GGCGCC 1 cut(s) 33
NdeII GATC 1 cut(s) 131
NlaIV GGNNCC 2 cut(s) 34, 109
NsbI TGCGCA 1 cut(s) 183
PfeI GAWTC 2 cut(s) 60, 119
PkrI GCNGC 2 cut(s) 37, 78
PleI GAGTC 1 cut(s) 238
PluTI GGCGCC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 34, 109
PspPI GGNCC 1 cut(s) 205
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 247
SatI GCNGC 2 cut(s) 36, 77
Sau3AI GATC 1 cut(s) 131
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 1 cut(s) 239
SduI GDGCHC 1 cut(s) 150
SetI ASST 2 cut(s) 118, 189
SfaNI GCATC 2 cut(s) 3, 96
SfoI GGCGCC 1 cut(s) 34
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 247
SsiI CCGC 1 cut(s) 36
SspDI GGCGCC 1 cut(s) 32
TaqI TCGA 1 cut(s) 217
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 2 cut(s) 60, 119
TscAI CASTG 1 cut(s) 228
TseI GCWGC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 231
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.