Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005147

Physical Location & Seq

Genomic Coordinates Forward (+)

19284293 .. 19284614

Gene Structure 322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG147700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGAAAAGTGTTCTTGCTCAGGACAGTCTATTGGGCGCCACACTCATAAGCATACTCACCGGAATCCGACAAAGCATCTACAACTCCATTTCTGATACCAAACCTGAATCCGACCCAGTGGCGGTGTTCTTATTATTCGGTATGGGTGAGATCAGTGAGAGCGAGGGGACGGTCGACGACCTCGGTGAACCGGAAGCTTCTTGTAGCCTAGAGATCCGAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

74

Amino Acids

7.8

Weight (kDa)

4.05

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28430
fragaria_vesca	FvH4_3g32290
malus_domestica	MD03G1117700.v1.1 MD11G1136000.v1.1
prunus_persica	Prupe.6G101400_v2.0.a1 Prupe.6G101400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0059081
rosa_laevigata	RLG00000034522
rosa_multiflora	Rmu_sc0002983.1_g000040
rosa_roxburghii	Rroxscaffold_1G00021330 Rroxscaffold_3G00246950
rosa_rugosa	Rorug05G0320300
rosa_samantha	Rh1AG137800 Rh1CG219500 Rh1DG170200 Rh2BG372200 Rh2DG389100 Rh5AG385700 Rh5BG397200 Rh5CG420900 Rh5DG319900 Rh5DG413300 Rh6CG147700 Rh7AG223800 Rh7AG445600 Rh7BG218900 Rh7CG237200 Rh7DG230900 Rh7DG434500
rosa_wichuraiana	Rw5G036310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	35
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	1 cut(s)	208
AcyI	GRCGYC	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	121
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
AlwI	GGATC	1 cut(s)	208
AspLEI	GCGC	1 cut(s)	38
AsuHPI	GGTGA	3 cut(s)	49, 158, 197
BanI	GGYRCC	1 cut(s)	35
BfaI	CTAG	1 cut(s)	209
BfoI	RGCGCY	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	37
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	84
BmuI	ACTGGG	1 cut(s)	110
Bpu10I	CCTNAGC	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	181, 217
BsaWI	WCCGGW	2 cut(s)	59, 190
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	181, 217
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	116
Bsh1285I	CGRYCG	1 cut(s)	174
BshNI	GGYRCC	1 cut(s)	35
BsiEI	CGRYCG	1 cut(s)	174
BsiSI	CCGG	2 cut(s)	60, 191
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	181
Bsp143I	GATC	2 cut(s)	150, 213
BspACI	CCGC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	37
BspPI	GGATC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	2 cut(s)	181, 217
BssMI	GATC	2 cut(s)	150, 213
BssNI	GRCGYC	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	26, 172
BstACI	GRCGYC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	18
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	2 cut(s)	153, 216
BstMBI	GATC	2 cut(s)	150, 213
BstMCI	CGRYCG	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BtsIMutI	CAGTG	2 cut(s)	123, 160
CfoI	GCGC	1 cut(s)	38
CviJI	RGCY	2 cut(s)	197, 207
CviKI_1	RGCY	2 cut(s)	197, 207
DdeI	CTNAG	1 cut(s)	18
DinI	GGCGCC	1 cut(s)	37
DpnI	GATC	2 cut(s)	152, 215
DpnII	GATC	2 cut(s)	150, 213
EgeI	GGCGCC	1 cut(s)	37
EheI	GGCGCC	1 cut(s)	37
FaiI	YATR	3 cut(s)	47, 53, 143
FaqI	GGGAC	1 cut(s)	181
FblI	GTMKAC	1 cut(s)	174
FspBI	CTAG	1 cut(s)	209
GlaI	GCGC	1 cut(s)	37
HaeII	RGCGCY	1 cut(s)	39
HapII	CCGG	2 cut(s)	60, 191
HhaI	GCGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	36
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	2 cut(s)	63, 107
HpaII	CCGG	2 cut(s)	60, 191
HphI	GGTGA	3 cut(s)	49, 158, 197
Hpy166II	GTNNAC	2 cut(s)	175, 188
Hpy188I	TCNGA	4 cut(s)	68, 94, 112, 218
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	2 cut(s)	175, 188
Hpy99I	CGWCG	1 cut(s)	179
HpyCH4III	ACNGT	2 cut(s)	26, 172
HpyF3I	CTNAG	1 cut(s)	18
Hsp92I	GRCGYC	1 cut(s)	36
HspAI	GCGC	1 cut(s)	36
KasI	GGCGCC	1 cut(s)	35
Kzo9I	GATC	2 cut(s)	150, 213
LpnPI	CCDG	5 cut(s)	5, 73, 117, 129, 204
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	1 cut(s)	209
MalI	GATC	2 cut(s)	152, 215
MboI	GATC	2 cut(s)	150, 213
MflI	RGATCY	1 cut(s)	213
Mly113I	GGCGCC	1 cut(s)	36
MmeI	TCCRAC	2 cut(s)	91, 135
MnlI	CCTC	3 cut(s)	157, 191, 212
MspI	CCGG	2 cut(s)	60, 191
NarI	GGCGCC	1 cut(s)	36
NdeII	GATC	2 cut(s)	150, 213
NlaIV	GGNNCC	1 cut(s)	37
PfeI	GAWTC	2 cut(s)	63, 107
PluTI	GGCGCC	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	213
SalI	GTCGAC	1 cut(s)	173
Sau3AI	GATC	2 cut(s)	150, 213
SetI	ASST	3 cut(s)	106, 183, 199
SfaNI	GCATC	1 cut(s)	84
SfoI	GGCGCC	1 cut(s)	37
SsiI	CCGC	1 cut(s)	122
SspDI	GGCGCC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	209
TaaI	ACNGT	2 cut(s)	26, 172
TaqI	TCGA	1 cut(s)	174
TfiI	GAWTC	2 cut(s)	63, 107
TscAI	CASTG	2 cut(s)	123, 160
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	123, 160
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.