MD11G1136000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0005147
Physical Location & Seq
Forward (+)
12476900 .. 12477860
961 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1136000.v1.1.491

Sequence Viewer

Length: 252 bp
ATGATTAGCGTTCTTGCTCAGGAGCGTCTGCTGGGCGCTGCACTCGGAAGCATACTCACGGGGATCGTTGTGTTCGAGCAGCGCAGGTGCATCTACAACTCCATTTCCGGCGCCAAACCTCTACGAGTTTCCCAGATTGCAGAGCCCATTTTTGGAAGGAAATCTCGTGCAGAGTTGGCGCACCTTTGGAACAAAGCTGTGGACCAGACATTTCGACCTGTGATCGAGTCTCTTAGTTCATCTGGATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.14

Weight (kDa)

10.01

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 75
Acc36I ACCTGC 1 cut(s) 75
AccB1I GGYRCC 1 cut(s) 110
AclWI GGATC 1 cut(s) 71
AcyI GRCGYC 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 152
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 1 cut(s) 71
ApeKI GCWGC 2 cut(s) 38, 79
AspLEI GCGC 4 cut(s) 38, 84, 113, 181
AspS9I GGNCC 1 cut(s) 202
AvaII GGWCC 1 cut(s) 202
BanI GGYRCC 1 cut(s) 110
BanII GRGCYC 1 cut(s) 147
BauI CACGAG 1 cut(s) 165
BbvI GCAGC 2 cut(s) 25, 91
BccI CCATC 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 234
BfoI RGCGCY 2 cut(s) 39, 114
BfuAI ACCTGC 1 cut(s) 75
BisI GCNGC 2 cut(s) 39, 80
BlsI GCNGC 2 cut(s) 40, 81
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 112
BmsI GCATC 1 cut(s) 99
Bpu10I CCTNAGC 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 152
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMII CTCAG 1 cut(s) 32
BseXI GCAGC 2 cut(s) 25, 91
BseYI CCCAGC 1 cut(s) 31
BsgI GTGCAG 2 cut(s) 24, 189
BshNI GGYRCC 1 cut(s) 110
BsiSI CCGG 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 63, 222
BspCNI CTCAG 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 112
BspMI ACCTGC 1 cut(s) 75
BspPI GGATC 1 cut(s) 71
BspT107I GGYRCC 1 cut(s) 110
BssMI GATC 2 cut(s) 63, 222
BssNI GRCGYC 1 cut(s) 111
BssSI CACGAG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 111
BstDEI CTNAG 2 cut(s) 18, 233
BstF5I GGATG 1 cut(s) 251
BstH2I RGCGCY 2 cut(s) 39, 114
BstHHI GCGC 4 cut(s) 38, 84, 113, 181
BstKTI GATC 2 cut(s) 66, 225
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 2 cut(s) 63, 222
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstV1I GCAGC 2 cut(s) 25, 91
BtsCI GGATG 1 cut(s) 251
BveI ACCTGC 1 cut(s) 75
CfoI GCGC 4 cut(s) 38, 84, 113, 181
Cfr13I GGNCC 1 cut(s) 202
CseI GACGC 1 cut(s) 14
CviJI RGCY 2 cut(s) 145, 197
CviKI_1 RGCY 2 cut(s) 145, 197
DdeI CTNAG 2 cut(s) 18, 233
DinI GGCGCC 1 cut(s) 112
DpnI GATC 2 cut(s) 65, 224
DpnII GATC 2 cut(s) 63, 222
Eco24I GRGCYC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 147
EgeI GGCGCC 1 cut(s) 112
EheI GGCGCC 1 cut(s) 112
FaiI YATR 1 cut(s) 53
Fnu4HI GCNGC 2 cut(s) 39, 80
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 2 cut(s) 39, 80
GlaI GCGC 4 cut(s) 37, 83, 112, 180
GluI GCNGC 2 cut(s) 39, 80
GsaI CCCAGC 1 cut(s) 35
HaeII RGCGCY 2 cut(s) 39, 114
HapII CCGG 1 cut(s) 108
HgaI GACGC 1 cut(s) 14
HhaI GCGC 4 cut(s) 38, 84, 113, 181
Hin1I GRCGYC 1 cut(s) 111
Hin6I GCGC 4 cut(s) 36, 82, 111, 179
HinP1I GCGC 4 cut(s) 36, 82, 111, 179
HinfI GANTC 1 cut(s) 227
HpaII CCGG 1 cut(s) 108
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 2 cut(s) 20, 243
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 150
HpyCH4V TGCA 4 cut(s) 41, 90, 140, 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 2 cut(s) 18, 233
Hsp92I GRCGYC 1 cut(s) 111
HspAI GCGC 4 cut(s) 36, 82, 111, 179
KasI GGCGCC 1 cut(s) 110
Kzo9I GATC 2 cut(s) 63, 222
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 8 cut(s) 5, 17, 70, 121, 146, 218, 228, 231
Lsp1109I GCAGC 2 cut(s) 25, 91
LweI GCATC 1 cut(s) 99
MalI GATC 2 cut(s) 65, 224
MboI GATC 2 cut(s) 63, 222
MhlI GDGCHC 1 cut(s) 147
Mly113I GGCGCC 1 cut(s) 111
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 1 cut(s) 129
MslI CAYNNNNRTG 1 cut(s) 244
MspI CCGG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 176
NarI GGCGCC 1 cut(s) 111
NdeII GATC 2 cut(s) 63, 222
NlaIV GGNNCC 1 cut(s) 112
PaqCI CACCTGC 1 cut(s) 75
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PkrI GCNGC 2 cut(s) 40, 81
PleI GAGTC 1 cut(s) 235
PluTI GGCGCC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 235
PspFI CCCAGC 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 244
SatI GCNGC 2 cut(s) 39, 80
Sau3AI GATC 2 cut(s) 63, 222
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 1 cut(s) 236
SduI GDGCHC 1 cut(s) 147
SetI ASST 5 cut(s) 89, 121, 186, 199, 220
SfaNI GCATC 1 cut(s) 99
SfoI GGCGCC 1 cut(s) 112
SinI GGWCC 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 244
SspDI GGCGCC 1 cut(s) 110
TaqI TCGA 3 cut(s) 75, 214, 225
TseI GCWGC 2 cut(s) 38, 79
TspDTI ATGAA 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.