AT2G30050

Belongs to the WD repeat SEC13 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
12824372 .. 12826684
2313 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G30050.1

Sequence Viewer

Length: 909 bp
ATGCCAGGTCAGAAGATTGAAACGGGTCATGAGGACATTGTCCATGATGTGCAGATGGATTACTATGGAAAGCGAATTGCAACTGCATCATCTGACTGCACCATCAAGATAACCGGTGTCAGCAACAACGGTGGATCGCAGCAACTAGCCACATTAACCGGCCACCGTGGTCCTGTCTGGGAAGTCGCGTGGGCACACCCAAAGTATGGATCAATCCTTGCTTCATGCTCCTATGATGGTCAAGTCATACTCTGGAAAGAAGGCAACCAGAACCAATGGACCCAAGATCATGTTTTCACAGACCACAAATCTTCAGTCAACTCCATTGCATGGGCTCCTCATGATATCGGACTATCCTTGGCCTGCGGGTCATCTGATGGCAACATTTCGGTTTTCACAGCCCGTGCTGACGGTGGCTGGGACACATCAAGGATTGACCAAGCACATCCGGTTGGAGTCACTTCAGTCTCATGGGCCCCAGCCACAGCGCCTGGTGCTCTTGTGAGCTCTGGTCTTCTCGATCCGGTTTACAAGCTAGCTTCTGGTGGATGTGATAATACCGTGAAAGTGTGGAAGCTCGCTAACGGGTCATGGAAGATGGATTGCTTTCCAGCTCTTCAAAAGCACACTGATTGGGTCCGTGATGTGGCTTGGGCACCAAACTTGGGTCTCCCCAAGTCCACCATAGCCAGTGGTTCCCAAGATGGGAAAGTTATCATATGGACAGTGGGAAAAGAAGGTGAGCAATGGGAAGGTAAGGTTCTCAAGGACTTTATGACTCCTGTGTGGCGGGTCTCGTGGTCGTTGACCGGTAACTTATTGGCCGTATCCGATGGGAACAACAACGTGACTGTGTGGAAAGAGGCTGTTGATGGAGAGTGGGAACAAGTTACTGCTGTTGAGCCTTAG

Protein Analysis

302

Amino Acids

32.64

Weight (kDa)

5.42

Isoelectric Point (pI)

25.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_TEP1_2nd PF25047 7 - 132 1.3e-06 TEP-1 second beta-propeller
Beta-prop_WDR5 PF25175 8 - 161 1.5e-15 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 8 - 91 2.6e-10 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 10 - 91 2.5e-12 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 14 - 111 1.7e-10 WDHD1 first WD40 domain
WD40_Prp19 PF24814 17 - 137 4.1e-11 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 19 - 160 1.7e-10 CDC20/Fizzy WD40 domain
WD40_Gbeta PF25391 24 - 159 2.3e-07 G protein beta WD-40 repeat protein
WD40 PF00400 47 - 85 5.1e-07 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 49 - 135 5.5e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st PF25173 92 - 243 1.7e-11 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 120 - 244 4.4e-09 CDC20/Fizzy WD40 domain
Beta-prop_CAF1B_HIR1 PF24105 174 - 248 6.3e-09 CAF1B/HIR1 beta-propeller domain
WD40_WDHD1_1st PF24817 178 - 288 1e-07 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 178 - 287 2.8e-12 WDR5 beta-propeller domain
WD40_Prp19 PF24814 178 - 283 3.9e-07 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 178 - 287 2.8e-14 THOC3 beta-propeller domain
Beta-prop_EML_2 PF23414 205 - 287 1e-05 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 655
AccB7I CCANNNNNTGG 2 cut(s) 206, 330
AccII CGCG 1 cut(s) 188
AciI CCGC 2 cut(s) 366, 790
AclWI GGATC 3 cut(s) 142, 217, 515
AcoI YGGCCR 2 cut(s) 160, 822
AcuI CTGAAG 2 cut(s) 297, 447
AfiI CCNNNNNNNGG 5 cut(s) 206, 330, 646, 665, 705
AgeI ACCGGT 2 cut(s) 113, 809
AgsI TTSAA 2 cut(s) 20, 620
AjnI CCWGG 2 cut(s) 4, 490
AluBI AGCT 5 cut(s) 507, 535, 539, 577, 614
AluI AGCT 5 cut(s) 507, 535, 539, 577, 614
Alw21I GWGCWC 2 cut(s) 499, 509
Alw26I GTCTC 3 cut(s) 472, 674, 799
AlwI GGATC 3 cut(s) 142, 217, 515
AlwNI CAGNNNCTG 1 cut(s) 491
AoxI GGCC 4 cut(s) 160, 360, 474, 822
ApaI GGGCCC 1 cut(s) 478
ApeKI GCWGC 1 cut(s) 139
ArsI GACNNNNNNTTYG 2 cut(s) 300, 332
AsiGI ACCGGT 2 cut(s) 113, 809
AspLEI GCGC 1 cut(s) 490
AspS9I GGNCC 5 cut(s) 170, 279, 474, 475, 637
AsuHPI GGTGA 1 cut(s) 752
AsuNHI GCTAGC 1 cut(s) 535
AvaII GGWCC 3 cut(s) 170, 279, 637
BaeGI GKGCMC 3 cut(s) 196, 478, 658
BanI GGYRCC 1 cut(s) 655
BanII GRGCYC 3 cut(s) 337, 478, 509
BauI CACGAG 1 cut(s) 796
BbsI GAAGAC 1 cut(s) 506
Bbv12I GWGCWC 2 cut(s) 499, 509
BbvI GCAGC 1 cut(s) 151
BccI CCATC 8 cut(s) 49, 110, 230, 371, 592, 698, 827, 866
BceAI ACGGC 1 cut(s) 809
BciT130I CCWGG 2 cut(s) 6, 492
BciVI GTATCC 1 cut(s) 838
BcoDI GTCTC 3 cut(s) 472, 674, 799
BfaI CTAG 2 cut(s) 146, 536
BfoI RGCGCY 1 cut(s) 491
BfuI GTATCC 1 cut(s) 838
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
Bme1390I CCNGG 2 cut(s) 6, 492
Bme18I GGWCC 3 cut(s) 170, 279, 637
BmgT120I GGNCC 5 cut(s) 170, 279, 474, 475, 637
BmiI GGNNCC 7 cut(s) 281, 336, 476, 477, 638, 657, 697
BmrFI CCNGG 2 cut(s) 6, 492
BmsI GCATC 1 cut(s) 95
BmtI GCTAGC 1 cut(s) 539
BpiI GAAGAC 1 cut(s) 506
BpuEI CTTGAG 1 cut(s) 749
BsaI GGTCTC 2 cut(s) 674, 799
BsaJI CCNNGG 2 cut(s) 166, 357
BsaWI WCCGGW 4 cut(s) 113, 448, 523, 809
Bsc4I CCNNNNNNNGG 5 cut(s) 206, 330, 646, 665, 705
Bse118I RCCGGY 3 cut(s) 113, 158, 809
Bse1I ACTGG 1 cut(s) 690
Bse3DI GCAATG 2 cut(s) 324, 752
BseBI CCWGG 2 cut(s) 6, 492
BseDI CCNNGG 2 cut(s) 166, 357
BseGI GGATG 2 cut(s) 445, 554
BseLI CCNNNNNNNGG 5 cut(s) 206, 330, 646, 665, 705
BseMI GCAATG 2 cut(s) 324, 752
BseNI ACTGG 1 cut(s) 690
BseRI GAGGAG 1 cut(s) 327
BseSI GKGCMC 3 cut(s) 196, 478, 658
BseXI GCAGC 1 cut(s) 151
BseYI CCCAGC 2 cut(s) 417, 478
BsgI GTGCAG 2 cut(s) 71, 82
Bsh1236I CGCG 1 cut(s) 188
BshFI GGCC 4 cut(s) 162, 362, 476, 824
BshNI GGYRCC 1 cut(s) 655
BshTI ACCGGT 2 cut(s) 113, 809
BsiHKAI GWGCWC 2 cut(s) 499, 509
BsiSI CCGG 5 cut(s) 114, 159, 449, 524, 810
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 5 cut(s) 206, 330, 646, 665, 705
BsmAI GTCTC 3 cut(s) 472, 674, 799
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 4 cut(s) 162, 362, 476, 824
Bso31I GGTCTC 2 cut(s) 674, 799
Bsp120I GGGCCC 1 cut(s) 474
Bsp1286I GDGCHC 6 cut(s) 196, 337, 478, 499, 509, 658
Bsp143I GATC 4 cut(s) 134, 209, 286, 520
BspACI CCGC 2 cut(s) 366, 790
BspANI GGCC 4 cut(s) 162, 362, 476, 824
BspFNI CGCG 1 cut(s) 188
BspHI TCATGA 2 cut(s) 28, 340
BspLI GGNNCC 7 cut(s) 281, 336, 476, 477, 638, 657, 697
BspOI GCTAGC 1 cut(s) 539
BspPI GGATC 3 cut(s) 142, 217, 515
BspQI GCTCTTC 1 cut(s) 621
BspT107I GGYRCC 1 cut(s) 655
BspTNI GGTCTC 2 cut(s) 674, 799
BsrDI GCAATG 2 cut(s) 324, 752
BsrFI RCCGGY 3 cut(s) 113, 158, 809
BsrI ACTGG 1 cut(s) 690
BssAI RCCGGY 3 cut(s) 113, 158, 809
BssECI CCNNGG 2 cut(s) 166, 357
BssMI GATC 4 cut(s) 134, 209, 286, 520
BssSI CACGAG 1 cut(s) 796
BssT1I CCWWGG 1 cut(s) 357
Bst2BI CACGAG 1 cut(s) 796
Bst2UI CCWGG 2 cut(s) 6, 492
Bst4CI ACNGT 6 cut(s) 131, 167, 413, 562, 727, 853
Bst6I CTCTTC 1 cut(s) 621
BstC8I GCNNGC 3 cut(s) 364, 537, 579
BstDEI CTNAG 1 cut(s) 906
BstDSI CCRYGG 1 cut(s) 166
BstF5I GGATG 2 cut(s) 445, 554
BstFNI CGCG 1 cut(s) 188
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 4 cut(s) 137, 212, 289, 523
BstMAI GTCTC 3 cut(s) 472, 674, 799
BstMBI GATC 4 cut(s) 134, 209, 286, 520
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNI CCWGG 2 cut(s) 6, 492
BstSCI CCNGG 2 cut(s) 4, 490
BstSLI GKGCMC 3 cut(s) 196, 478, 658
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 151
BstV2I GAAGAC 1 cut(s) 506
BsuI GTATCC 1 cut(s) 838
BsuRI GGCC 4 cut(s) 162, 362, 476, 824
BtgI CCRYGG 1 cut(s) 166
BtsCI GGATG 2 cut(s) 445, 554
BtsIMutI CAGTG 3 cut(s) 627, 697, 732
Cac8I GCNNGC 3 cut(s) 364, 537, 579
CaiI CAGNNNCTG 1 cut(s) 491
CciI TCATGA 2 cut(s) 28, 340
CfoI GCGC 1 cut(s) 490
Cfr10I RCCGGY 3 cut(s) 113, 158, 809
Cfr13I GGNCC 5 cut(s) 170, 279, 474, 475, 637
CspAI ACCGGT 2 cut(s) 113, 809
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 8 cut(s) 29, 44, 225, 290, 330, 341, 471, 591
DdeI CTNAG 1 cut(s) 906
DpnI GATC 4 cut(s) 136, 211, 288, 522
DpnII GATC 4 cut(s) 134, 209, 286, 520
EaeI YGGCCR 2 cut(s) 160, 822
Eam1104I CTCTTC 1 cut(s) 621
EarI CTCTTC 1 cut(s) 621
Ecl136II GAGCTC 1 cut(s) 507
Eco130I CCWWGG 1 cut(s) 357
Eco24I GRGCYC 3 cut(s) 337, 478, 509
Eco31I GGTCTC 2 cut(s) 674, 799
Eco32I GATATC 1 cut(s) 346
Eco47I GGWCC 3 cut(s) 170, 279, 637
Eco53kI GAGCTC 1 cut(s) 507
Eco57I CTGAAG 2 cut(s) 297, 447
EcoICRI GAGCTC 1 cut(s) 507
EcoO109I RGGNCCY 1 cut(s) 475
EcoRII CCWGG 2 cut(s) 4, 490
EcoRV GATATC 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 357
EcoT38I GRGCYC 3 cut(s) 337, 478, 509
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 8 cut(s) 32, 47, 228, 293, 333, 344, 474, 594
FaqI GGGAC 1 cut(s) 434
FatI CATG 8 cut(s) 28, 43, 224, 289, 329, 340, 470, 590
FauI CCCGC 2 cut(s) 359, 783
FauNDI CATATG 1 cut(s) 719
Fnu4HI GCNGC 1 cut(s) 140
FokI GGATG 2 cut(s) 432, 561
FriOI GRGCYC 3 cut(s) 337, 478, 509
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 2 cut(s) 146, 536
GlaI GCGC 1 cut(s) 489
GluI GCNGC 1 cut(s) 140
GsaI CCCAGC 2 cut(s) 421, 482
HaeII RGCGCY 1 cut(s) 491
HaeIII GGCC 4 cut(s) 162, 362, 476, 824
HapII CCGG 5 cut(s) 114, 159, 449, 524, 810
HhaI GCGC 1 cut(s) 490
Hin1II CATG 8 cut(s) 32, 47, 228, 293, 333, 344, 474, 594
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HincII GTYRAC 2 cut(s) 319, 807
HindII GTYRAC 2 cut(s) 319, 807
HinfI GANTC 2 cut(s) 456, 778
HpaII CCGG 5 cut(s) 114, 159, 449, 524, 810
HphI GGTGA 1 cut(s) 752
Hpy166II GTNNAC 4 cut(s) 319, 529, 681, 807
Hpy188I TCNGA 5 cut(s) 12, 94, 350, 376, 832
Hpy188III TCNNGA 5 cut(s) 29, 106, 253, 341, 518
Hpy8I GTNNAC 4 cut(s) 319, 529, 681, 807
HpyAV CCTTC 3 cut(s) 254, 731, 746
HpyCH4III ACNGT 6 cut(s) 131, 167, 413, 562, 727, 853
HpyCH4IV ACGT 1 cut(s) 846
HpyCH4V TGCA 5 cut(s) 52, 80, 86, 99, 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 1 cut(s) 906
HpySE526I ACGT 1 cut(s) 846
Hsp92II CATG 8 cut(s) 32, 47, 228, 293, 333, 344, 474, 594
HspAI GCGC 1 cut(s) 488
Kzo9I GATC 4 cut(s) 134, 209, 286, 520
LguI GCTCTTC 1 cut(s) 621
LmnI GCTCC 2 cut(s) 233, 340
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 1 cut(s) 95
MaeI CTAG 2 cut(s) 146, 536
MaeII ACGT 1 cut(s) 846
MaeIII GTNAC 4 cut(s) 457, 812, 847, 889
MalI GATC 4 cut(s) 136, 211, 288, 522
MboI GATC 4 cut(s) 134, 209, 286, 520
MboII GAAGA 5 cut(s) 25, 303, 506, 607, 608
MhlI GDGCHC 6 cut(s) 196, 337, 478, 499, 509, 658
MluCI AATT 1 cut(s) 75
MlyI GAGTC 2 cut(s) 465, 772
MmeI TCCRAC 1 cut(s) 433
MnlI CCTC 3 cut(s) 25, 348, 856
MseI TTAA 1 cut(s) 155
MspI CCGG 5 cut(s) 114, 159, 449, 524, 810
MspR9I CCNGG 2 cut(s) 6, 492
MvaI CCWGG 2 cut(s) 6, 492
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 494
NdeI CATATG 1 cut(s) 719
NdeII GATC 4 cut(s) 134, 209, 286, 520
NheI GCTAGC 1 cut(s) 535
NlaIII CATG 8 cut(s) 32, 47, 228, 293, 333, 344, 474, 594
NlaIV GGNNCC 7 cut(s) 281, 336, 476, 477, 638, 657, 697
NmuCI GTSAC 2 cut(s) 457, 847
PagI TCATGA 2 cut(s) 28, 340
PciSI GCTCTTC 1 cut(s) 621
PflFI GACNNNGTC 1 cut(s) 38
PflMI CCANNNNNTGG 2 cut(s) 206, 330
PinAI ACCGGT 2 cut(s) 113, 809
PkrI GCNGC 1 cut(s) 141
PleI GAGTC 2 cut(s) 464, 772
PpsI GAGTC 2 cut(s) 464, 772
Psp124BI GAGCTC 1 cut(s) 509
Psp6I CCWGG 2 cut(s) 4, 490
PspFI CCCAGC 2 cut(s) 417, 478
PspGI CCWGG 2 cut(s) 4, 490
PspN4I GGNNCC 7 cut(s) 281, 336, 476, 477, 638, 657, 697
PspOMI GGGCCC 1 cut(s) 474
PspPI GGNCC 5 cut(s) 170, 279, 474, 475, 637
PstNI CAGNNNCTG 1 cut(s) 491
PsyI GACNNNGTC 1 cut(s) 38
SacI GAGCTC 1 cut(s) 509
SapI GCTCTTC 1 cut(s) 621
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 4 cut(s) 134, 209, 286, 520
Sau96I GGNCC 5 cut(s) 170, 279, 474, 475, 637
SchI GAGTC 2 cut(s) 465, 772
ScrFI CCNGG 2 cut(s) 6, 492
SduI GDGCHC 6 cut(s) 196, 337, 478, 499, 509, 658
SfaNI GCATC 1 cut(s) 95
SinI GGWCC 3 cut(s) 170, 279, 637
SmlI CTYRAG 1 cut(s) 764
SmoI CTYRAG 1 cut(s) 764
Sse9I AATT 1 cut(s) 75
SsiI CCGC 2 cut(s) 366, 790
SspMI CTAG 2 cut(s) 146, 536
SstI GAGCTC 1 cut(s) 509
StyD4I CCNGG 2 cut(s) 4, 490
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 6 cut(s) 131, 167, 413, 562, 727, 853
TaiI ACGT 1 cut(s) 849
TaqI TCGA 1 cut(s) 519
TasI AATT 1 cut(s) 75
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TscAI CASTG 3 cut(s) 634, 697, 732
TseFI GTSAC 2 cut(s) 457, 847
TseI GCWGC 1 cut(s) 139
Tsp45I GTSAC 2 cut(s) 457, 847
TspDTI ATGAA 1 cut(s) 213
TspGWI ACGGA 1 cut(s) 629
TspRI CASTG 3 cut(s) 634, 697, 732
Tth111I GACNNNGTC 1 cut(s) 38
Van91I CCANNNNNTGG 2 cut(s) 206, 330
VpaK11BI GGWCC 3 cut(s) 170, 279, 637
XspI CTAG 2 cut(s) 146, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.