Rmu_ssc0000389.1_g000004

Belongs to the WD repeat SEC13 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000389.1
Physical Location & Seq
Forward (+)
19188 .. 20751
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000389.1_g000004.1.cds

Sequence Viewer

Length: 1023 bp
ctgaaatctagcgcgactcctcgtcaagcagcttctctcaactcaatttcgatccgatacgacgccgtctcctctcttttctctctcgctcaggggaggtatttaaggagacagacacaggcaagggcaaggttttgtaggaaaggggatgttgttcatgatgttgccatggattactatggaaagcgtctagcatcagcttcatctgatatgaccattaagataattggtgtcggcagcaatgcgggttcacagcaccttgctacgttgtccggtcacagaggtcctgtatggcaggtgggttgggcgcatcccaagtttgggccgatccttgcttcgtgctcgtatgatggccaagtgataatttggaaggagggtaatccaaatgagtggcaacaggctcatgtatttaatgagcacagttcatctgtaaattccatttgttgggcgcctcatgaacttggcctcatcttagcttgtggttcttctgatgggaacatctccgttttcactgctagggcggatggtggttgggacaccactaggatagaccaagcacaccctgttggagtaacctccgtttcatgggccccatcaatggctcctggttctttagttggaactggcatgcttgaacctgttcagaagctggtctctggtggctgcgacaatacagtgaaggtgtggaaattgtacaatgagacttggaagatggattgcttccctgctcttcaaatgcacgctgattgggtgagagatgtagcctgggcacccaacttgggacttcccaagtccaccattgcaagttgttcacaggacggaacagtggttatctggactgtggccaaagaaggcgatcaatggcaggggaaggtattgaaggattttaagacccctgtttggagggtgtcatggtcactaacaggaaacctactggccgtggccgatggaaataacgaagtatcattgtggaaagagtctgttgatggtgagtggcaacaagtgagcacagtcgacccatag

Protein Analysis

340

Amino Acids

37.05

Weight (kDa)

7.23

Isoelectric Point (pI)

26.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 286
Acc36I ACCTGC 1 cut(s) 286
AccB1I GGYRCC 2 cut(s) 448, 769
AccB7I CCANNNNNTGG 1 cut(s) 444
AccI GTMKAC 1 cut(s) 1014
AccII CGCG 1 cut(s) 14
AciI CCGC 2 cut(s) 245, 521
AclWI GGATC 2 cut(s) 46, 322
AcoI YGGCCR 4 cut(s) 352, 843, 936, 942
AcsI RAATTY 1 cut(s) 433
AcyI GRCGYC 2 cut(s) 63, 449
AfaI GTAC 1 cut(s) 695
AfiI CCNNNNNNNGG 7 cut(s) 320, 321, 444, 585, 598, 779, 900
AgsI TTSAA 3 cut(s) 635, 734, 880
AhdI GACNNNNNGTC 1 cut(s) 21
AjnI CCWGG 2 cut(s) 604, 764
AluBI AGCT 4 cut(s) 32, 200, 476, 649
AluI AGCT 4 cut(s) 32, 200, 476, 649
Alw21I GWGCWC 3 cut(s) 344, 420, 1010
Alw26I GTCTC 4 cut(s) 73, 103, 658, 695
AlwI GGATC 2 cut(s) 46, 322
AlwNI CAGNNNCTG 1 cut(s) 649
AoxI GGCC 7 cut(s) 323, 352, 463, 588, 843, 936, 942
ApaI GGGCCC 1 cut(s) 592
ApeKI GCWGC 3 cut(s) 29, 237, 663
ApoI RAATTY 1 cut(s) 433
Asp700I GAANNNNTTC 1 cut(s) 639
AspLEI GCGC 3 cut(s) 14, 310, 451
AspS9I GGNCC 4 cut(s) 284, 323, 588, 589
AsuHPI GGTGA 2 cut(s) 763, 1001
AvaII GGWCC 1 cut(s) 284
BaeGI GKGCMC 2 cut(s) 592, 772
BalI TGGCCA 2 cut(s) 354, 845
BanI GGYRCC 2 cut(s) 448, 769
BanII GRGCYC 1 cut(s) 592
Bbv12I GWGCWC 3 cut(s) 344, 420, 1010
BbvI GCAGC 3 cut(s) 41, 249, 650
BccI CCATC 7 cut(s) 344, 485, 518, 601, 706, 941, 980
BceAI ACGGC 2 cut(s) 50, 923
BciT130I CCWGG 2 cut(s) 606, 766
BcoDI GTCTC 4 cut(s) 73, 103, 658, 695
BfaI CTAG 4 cut(s) 9, 191, 516, 543
BfoI RGCGCY 1 cut(s) 452
BfuAI ACCTGC 1 cut(s) 286
BisI GCNGC 3 cut(s) 30, 238, 664
BlsI GCNGC 3 cut(s) 31, 239, 665
Bme1390I CCNGG 2 cut(s) 606, 766
Bme18I GGWCC 1 cut(s) 284
BmeRI GACNNNNNGTC 1 cut(s) 21
BmgT120I GGNCC 4 cut(s) 284, 323, 588, 589
BmiI GGNNCC 5 cut(s) 450, 590, 591, 603, 771
BmrFI CCNGG 2 cut(s) 606, 766
BmsI GCATC 2 cut(s) 203, 319
Bpu10I CCTNAGC 1 cut(s) 90
BsaHI GRCGYC 2 cut(s) 63, 449
BsaI GGTCTC 1 cut(s) 658
BsaJI CCNNGG 3 cut(s) 168, 765, 939
BsaWI WCCGGW 1 cut(s) 272
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 7 cut(s) 320, 321, 444, 585, 598, 779, 900
Bse1I ACTGG 2 cut(s) 628, 939
Bse3DI GCAATG 2 cut(s) 247, 798
BseBI CCWGG 2 cut(s) 606, 766
BseDI CCNNGG 3 cut(s) 168, 765, 939
BseGI GGATG 3 cut(s) 154, 310, 529
BseLI CCNNNNNNNGG 7 cut(s) 320, 321, 444, 585, 598, 779, 900
BseMI GCAATG 2 cut(s) 247, 798
BseMII CTCAG 1 cut(s) 104
BseNI ACTGG 2 cut(s) 628, 939
BseRI GAGGAG 2 cut(s) 9, 61
BseSI GKGCMC 2 cut(s) 592, 772
BseXI GCAGC 3 cut(s) 41, 249, 650
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 7 cut(s) 325, 354, 465, 590, 845, 938, 944
BshNI GGYRCC 2 cut(s) 448, 769
BsiHKAI GWGCWC 3 cut(s) 344, 420, 1010
BsiSI CCGG 1 cut(s) 273
BslFI GGGAC 2 cut(s) 548, 795
BslI CCNNNNNNNGG 7 cut(s) 320, 321, 444, 585, 598, 779, 900
BsmAI GTCTC 4 cut(s) 73, 103, 658, 695
BsmBI CGTCTC 1 cut(s) 73
BsmFI GGGAC 2 cut(s) 548, 795
BsnI GGCC 7 cut(s) 325, 354, 465, 590, 845, 938, 944
Bso31I GGTCTC 1 cut(s) 658
Bsp120I GGGCCC 1 cut(s) 588
Bsp1286I GDGCHC 5 cut(s) 344, 420, 592, 772, 1010
Bsp1407I TGTACA 1 cut(s) 693
Bsp143I GATC 3 cut(s) 51, 327, 856
Bsp19I CCATGG 1 cut(s) 168
BspACI CCGC 2 cut(s) 245, 521
BspANI GGCC 7 cut(s) 325, 354, 465, 590, 845, 938, 944
BspCNI CTCAG 1 cut(s) 103
BspFNI CGCG 1 cut(s) 14
BspHI TCATGA 2 cut(s) 157, 454
BspLI GGNNCC 5 cut(s) 450, 590, 591, 603, 771
BspMI ACCTGC 1 cut(s) 286
BspPI GGATC 2 cut(s) 46, 322
BspQI GCTCTTC 1 cut(s) 735
BspT107I GGYRCC 2 cut(s) 448, 769
BspTNI GGTCTC 1 cut(s) 658
BsrDI GCAATG 2 cut(s) 247, 798
BsrGI TGTACA 1 cut(s) 693
BsrI ACTGG 2 cut(s) 628, 939
BssECI CCNNGG 3 cut(s) 168, 765, 939
BssMI GATC 3 cut(s) 51, 327, 856
BssNI GRCGYC 2 cut(s) 63, 449
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 2 cut(s) 606, 766
Bst4CI ACNGT 5 cut(s) 422, 676, 826, 841, 1012
Bst6I CTCTTC 1 cut(s) 735
BstACI GRCGYC 2 cut(s) 63, 449
BstAUI TGTACA 1 cut(s) 693
BstC8I GCNNGC 2 cut(s) 629, 741
BstDEI CTNAG 2 cut(s) 90, 472
BstDSI CCRYGG 2 cut(s) 168, 939
BstF5I GGATG 3 cut(s) 154, 310, 529
BstFNI CGCG 1 cut(s) 14
BstH2I RGCGCY 1 cut(s) 452
BstHHI GCGC 3 cut(s) 14, 310, 451
BstKTI GATC 3 cut(s) 54, 330, 859
BstMAI GTCTC 4 cut(s) 73, 103, 658, 695
BstMBI GATC 3 cut(s) 51, 327, 856
BstNI CCWGG 2 cut(s) 606, 766
BstNSI RCATGY 1 cut(s) 631
BstSCI CCNGG 2 cut(s) 604, 764
BstSLI GKGCMC 2 cut(s) 592, 772
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 3 cut(s) 41, 249, 650
BstXI CCANNNNNNTGG 1 cut(s) 390
BsuRI GGCC 7 cut(s) 325, 354, 465, 590, 845, 938, 944
BtgI CCRYGG 2 cut(s) 168, 939
BtsCI GGATG 3 cut(s) 154, 310, 529
BtsI GCAGTG 1 cut(s) 510
BtsIMutI CAGTG 3 cut(s) 510, 681, 831
BveI ACCTGC 1 cut(s) 286
Cac8I GCNNGC 2 cut(s) 629, 741
CaiI CAGNNNCTG 1 cut(s) 649
CciI TCATGA 2 cut(s) 157, 454
CfoI GCGC 3 cut(s) 14, 310, 451
Cfr13I GGNCC 4 cut(s) 284, 323, 588, 589
CseI GACGC 2 cut(s) 71, 176
Csp6I GTAC 1 cut(s) 694
CviAII CATG 7 cut(s) 158, 169, 404, 455, 585, 628, 912
CviQI GTAC 1 cut(s) 694
DdeI CTNAG 2 cut(s) 90, 472
DinI GGCGCC 1 cut(s) 450
DpnI GATC 3 cut(s) 53, 329, 858
DpnII GATC 3 cut(s) 51, 327, 856
DriI GACNNNNNGTC 1 cut(s) 21
EaeI YGGCCR 4 cut(s) 352, 843, 936, 942
Eam1104I CTCTTC 1 cut(s) 735
Eam1105I GACNNNNNGTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 735
EciI GGCGGA 1 cut(s) 536
Eco130I CCWWGG 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 592
Eco31I GGTCTC 1 cut(s) 658
Eco47I GGWCC 1 cut(s) 284
EcoO109I RGGNCCY 2 cut(s) 284, 589
EcoRII CCWGG 2 cut(s) 604, 764
EcoT14I CCWWGG 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 592
EgeI GGCGCC 1 cut(s) 450
EheI GGCGCC 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 168
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 7 cut(s) 161, 172, 407, 458, 588, 631, 915
FaqI GGGAC 2 cut(s) 548, 795
FatI CATG 7 cut(s) 157, 168, 403, 454, 584, 627, 911
FauI CCCGC 1 cut(s) 238
FblI GTMKAC 1 cut(s) 1014
Fnu4HI GCNGC 3 cut(s) 30, 238, 664
FokI GGATG 3 cut(s) 161, 297, 536
FriOI GRGCYC 1 cut(s) 592
Fsp4HI GCNGC 3 cut(s) 30, 238, 664
FspBI CTAG 4 cut(s) 9, 191, 516, 543
GlaI GCGC 3 cut(s) 13, 309, 450
GluI GCNGC 3 cut(s) 30, 238, 664
HaeII RGCGCY 1 cut(s) 452
HaeIII GGCC 7 cut(s) 325, 354, 465, 590, 845, 938, 944
HapII CCGG 1 cut(s) 273
HgaI GACGC 2 cut(s) 71, 176
HhaI GCGC 3 cut(s) 14, 310, 451
Hin1I GRCGYC 2 cut(s) 63, 449
Hin1II CATG 7 cut(s) 161, 172, 407, 458, 588, 631, 915
Hin6I GCGC 3 cut(s) 12, 308, 449
HinP1I GCGC 3 cut(s) 12, 308, 449
HincII GTYRAC 1 cut(s) 1015
HindII GTYRAC 1 cut(s) 1015
HinfI GANTC 2 cut(s) 16, 977
HpaII CCGG 1 cut(s) 273
HphI GGTGA 2 cut(s) 763, 1001
Hpy166II GTNNAC 4 cut(s) 251, 795, 812, 1015
Hpy188I TCNGA 4 cut(s) 56, 208, 490, 645
Hpy188III TCNNGA 3 cut(s) 158, 455, 835
Hpy8I GTNNAC 4 cut(s) 251, 795, 812, 1015
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 5 cut(s) 364, 673, 845, 865, 874
HpyCH4III ACNGT 5 cut(s) 422, 676, 826, 841, 1012
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 2 cut(s) 739, 803
HpyF3I CTNAG 2 cut(s) 90, 472
HpySE526I ACGT 1 cut(s) 266
Hsp92I GRCGYC 2 cut(s) 63, 449
Hsp92II CATG 7 cut(s) 161, 172, 407, 458, 588, 631, 915
HspAI GCGC 3 cut(s) 12, 308, 449
KasI GGCGCC 1 cut(s) 448
Kzo9I GATC 3 cut(s) 51, 327, 856
LguI GCTCTTC 1 cut(s) 735
LmnI GCTCC 1 cut(s) 607
Lsp1109I GCAGC 3 cut(s) 41, 249, 650
LweI GCATC 2 cut(s) 203, 319
MaeI CTAG 4 cut(s) 9, 191, 516, 543
MaeII ACGT 1 cut(s) 266
MaeIII GTNAC 3 cut(s) 275, 571, 915
MalI GATC 3 cut(s) 53, 329, 858
MboI GATC 3 cut(s) 51, 327, 856
MboII GAAGA 3 cut(s) 477, 721, 722
MhlI GDGCHC 5 cut(s) 344, 420, 592, 772, 1010
MlsI TGGCCA 2 cut(s) 354, 845
MluCI AATT 5 cut(s) 45, 225, 363, 433, 689
MluNI TGGCCA 2 cut(s) 354, 845
Mly113I GGCGCC 1 cut(s) 449
MlyI GAGTC 2 cut(s) 10, 986
MmeI TCCRAC 2 cut(s) 547, 598
MnlI CCTC 9 cut(s) 30, 82, 90, 275, 367, 462, 476, 586, 897
Mox20I TGGCCA 2 cut(s) 354, 845
MroXI GAANNNNTTC 1 cut(s) 639
MscI TGGCCA 2 cut(s) 354, 845
MseI TTAA 4 cut(s) 104, 219, 411, 888
Msp20I TGGCCA 2 cut(s) 354, 845
MspI CCGG 1 cut(s) 273
MspR9I CCNGG 2 cut(s) 606, 766
MvaI CCWGG 2 cut(s) 606, 766
MvnI CGCG 1 cut(s) 14
NarI GGCGCC 1 cut(s) 449
NcoI CCATGG 1 cut(s) 168
NdeII GATC 3 cut(s) 51, 327, 856
NlaIII CATG 7 cut(s) 161, 172, 407, 458, 588, 631, 915
NlaIV GGNNCC 5 cut(s) 450, 590, 591, 603, 771
NmuCI GTSAC 2 cut(s) 275, 915
NspI RCATGY 1 cut(s) 631
PaeI GCATGC 1 cut(s) 631
PagI TCATGA 2 cut(s) 157, 454
PaqCI CACCTGC 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 735
PdmI GAANNNNTTC 1 cut(s) 639
PflFI GACNNNGTC 1 cut(s) 65
PflMI CCANNNNNTGG 1 cut(s) 444
PkrI GCNGC 3 cut(s) 31, 239, 665
PleI GAGTC 2 cut(s) 10, 985
PluTI GGCGCC 1 cut(s) 452
PpsI GAGTC 2 cut(s) 10, 985
PpuMI RGGWCCY 1 cut(s) 284
Psp5II RGGWCCY 1 cut(s) 284
Psp6I CCWGG 2 cut(s) 604, 764
PspGI CCWGG 2 cut(s) 604, 764
PspN4I GGNNCC 5 cut(s) 450, 590, 591, 603, 771
PspOMI GGGCCC 1 cut(s) 588
PspPI GGNCC 4 cut(s) 284, 323, 588, 589
PspPPI RGGWCCY 1 cut(s) 284
PstNI CAGNNNCTG 1 cut(s) 649
PsyI GACNNNGTC 1 cut(s) 65
RsaI GTAC 1 cut(s) 695
RsaNI GTAC 1 cut(s) 694
SalI GTCGAC 1 cut(s) 1013
SapI GCTCTTC 1 cut(s) 735
SaqAI TTAA 4 cut(s) 104, 219, 411, 888
SatI GCNGC 3 cut(s) 30, 238, 664
Sau3AI GATC 3 cut(s) 51, 327, 856
Sau96I GGNCC 4 cut(s) 284, 323, 588, 589
SchI GAGTC 2 cut(s) 10, 986
ScrFI CCNGG 2 cut(s) 606, 766
SduI GDGCHC 5 cut(s) 344, 420, 592, 772, 1010
SfaNI GCATC 2 cut(s) 203, 319
SfoI GGCGCC 1 cut(s) 450
SinI GGWCC 1 cut(s) 284
SphI GCATGC 1 cut(s) 631
Sse9I AATT 5 cut(s) 45, 225, 363, 433, 689
SsiI CCGC 2 cut(s) 245, 521
SspDI GGCGCC 1 cut(s) 448
SspMI CTAG 4 cut(s) 9, 191, 516, 543
StyD4I CCNGG 2 cut(s) 604, 764
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 5 cut(s) 422, 676, 826, 841, 1012
TaiI ACGT 1 cut(s) 269
TaqI TCGA 2 cut(s) 50, 1014
TasI AATT 5 cut(s) 45, 225, 363, 433, 689
TatI WGTACW 1 cut(s) 693
Tru1I TTAA 4 cut(s) 104, 219, 411, 888
Tru9I TTAA 4 cut(s) 104, 219, 411, 888
TscAI CASTG 3 cut(s) 517, 681, 831
TseFI GTSAC 2 cut(s) 275, 915
TseI GCWGC 3 cut(s) 29, 237, 663
Tsp45I GTSAC 2 cut(s) 275, 915
TspDTI ATGAA 5 cut(s) 146, 192, 414, 471, 573
TspGWI ACGGA 3 cut(s) 493, 568, 834
TspRI CASTG 3 cut(s) 517, 681, 831
Tth111I GACNNNGTC 1 cut(s) 65
Van91I CCANNNNNTGG 1 cut(s) 444
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 1 cut(s) 433
XceI RCATGY 1 cut(s) 631
XmiI GTMKAC 1 cut(s) 1014
XmnI GAANNNNTTC 1 cut(s) 639
XspI CTAG 4 cut(s) 9, 191, 516, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.