Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001675

Physical Location & Seq

Genomic Coordinates Reverse (-)

127303 .. 128994

Gene Structure 1692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCCTCCTCAGAAGATTGAAACTGGTCATAGCGACACTATTCATGATGTGGTCATGGATTACTATGGAAAGCGAGTAGCAACTGCCTCGTCTGACTGCACGATCAAGATAACCGGAGTAAGCAACAGCGGTGGATCTCAGCATCTAGCTACCTTAACCGGTCATCGAGGTCCTGTCTGGCAAGTCGCTTGGGCGCACCCAAAGTTTGGTTCACTTCTCGCTTCATGTTCCTATGATGGGCAAATTATATTATGGAAAGAAGGTAACCAAAACCAATGGACACAAGCTCATGTCTTCACAGACCACAAAGTATCTGTCAACTCTATCGCTTGGGCTCCTCATGAACTTGGACTCTCCTTAGCTTGCGGAGCATCTGATGGAAACATATCAGTTTTCTCGGCTCGAGCTGATGGCGGTTGGGACACGACAAAGATAGACCAAGCACACCCTGTTGGTGTCACTTCAGTGTCGTGGGCACCGGCCACAGAACCAGGCGCACTCGTTAGCTCTGGTATGATCGATCCGGTCTACAAACTAGCATCCGGCGGGTGTGATAGCACGGTGAAAGTGTGGAAGTTCTCGAACGGGTCATGGAAAATGGATTGTTTCCCGGCTCTCAACAAGCACACGGATTGGGTCCGTGATGTGGCTTGGGCACCGAACTTGGGTCTCCCAAAGTCAACCATAGCCAGTGGTTCAGAAGATGGGAAAGTGATCATATGGACCATAGGGAAAGAAGGTGAGCAATGGGAAGGTACTGTTTTGAAAGATTTCAAAACACCAGTGTGGCGGGTCTCGTGGTCGTTGACCGGTAATTTGTTGGCTGTTTCCGATGGGAACAATAACGTTACAGTGTGGAAAGAGTCTGTTGATGGAGAGTGGGAACAAGTGACTGTTGTTGAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005829 GO:0006810 GO:0006888 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031080 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0098588 GO:0098805 GO:0098852

KEGG Pathways

Metabolic & Signaling

ko03013 ko04141 ko04150 map03013 map04141 map04150

Pfam Domains

Protein Families

WD40

Protein Analysis

302

Amino Acids

32.63

Weight (kDa)

5.64

Isoelectric Point (pI)

24.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_TEP1_2nd	PF25047	3 - 192	3.6e-06	TEP-1 second beta-propeller
WD40_WDHD1_1st	PF24817	5 - 113	3.9e-10	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	8 - 170	6e-15	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	8 - 91	1.1e-09	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	10 - 161	2.4e-16	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	10 - 162	3.1e-10	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	18 - 114	1.2e-08	Prp19 WD40 domain
WD40_Gbeta	PF25391	25 - 159	8.9e-06	G protein beta WD-40 repeat protein
WD40	PF00400	47 - 85	2e-07	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	93 - 287	1.8e-11	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	120 - 244	1.1e-07	CDC20/Fizzy WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	174 - 248	5.3e-09	CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3	PF25174	178 - 287	4.7e-14	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	178 - 287	5.5e-12	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	178 - 288	5.7e-07	WDHD1 first WD40 domain
WD40_Prp19	PF24814	178 - 281	5.3e-07	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30050 AT3G01340 AT3G01340
fragaria_vesca	FvH4_6g32220 FvH4_6g32220 FvH4_6g32220 FvH4_6g32220 FvH4_6g32220 FvH4_6g32220 FvH4_6g49840 FvH4_6g49840 FvH4_6g49840
malus_domestica	MD09G1041000.v1.1 MD09G1205500.v1.1 MD17G1042300.v1.1 MD17G1185700.v1.1
prunus_persica	Prupe.3G060800_v2.0.a1 Prupe.3G276700_v2.0.a1
pyrus_communis	pycom09g12210 pycom111g03200 pycom17g03790 pycom17g19510
rosa_chinensis	RchiOBHm_Chr2g0140101 RchiOBHm_Chr2g0170031
rosa_laevigata	RLG00000010169 RLG00000019849 RLG00000021917
rosa_multiflora	Rmu_co8506925.1_g000001 Rmu_sc0003244.1_g000028 Rmu_sc0013078.1_g000015 Rmu_ssc0000389.1_g000004
rosa_roxburghii	Rroxscaffold_2G00081680 Rroxscaffold_2G00105060
rosa_rugosa	Rorug02G0361100 Rorug02G0361200 Rorug02G0545000 Rorug02G0545100
rosa_samantha	Rh2AG411800 Rh2AG617500 Rh2BG422100 Rh2BG628800 Rh2CG397900 Rh2CG598300 Rh2DG431500 Rh2DG640000 Rh2DG640600 Rh4BG007800
rosa_wichuraiana	Rw2G033740 Rw2G051120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	475, 655
AccB7I	CCANNNNNTGG	1 cut(s)	206
AccI	GTMKAC	1 cut(s)	528
AciI	CCGC	5 cut(s)	129, 366, 414, 546, 790
AclI	AACGTT	1 cut(s)	846
AclWI	GGATC	2 cut(s)	142, 515
AcoI	YGGCCR	1 cut(s)	480
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	1 cut(s)	757
AfiI	CCNNNNNNNGG	4 cut(s)	206, 237, 646, 665
AgeI	ACCGGT	2 cut(s)	158, 809
AgsI	TTSAA	3 cut(s)	20, 766, 775
AjnI	CCWGG	1 cut(s)	490
AjuI	GAANNNNNNNTTGG	2 cut(s)	193, 225
AleI	CACNNNNGTG	2 cut(s)	464, 784
AluBI	AGCT	5 cut(s)	149, 287, 362, 407, 507
AluI	AGCT	5 cut(s)	149, 287, 362, 407, 507
Alw26I	GTCTC	2 cut(s)	674, 799
AlwI	GGATC	2 cut(s)	142, 515
Ama87I	CYCGRG	1 cut(s)	402
AoxI	GGCC	1 cut(s)	480
ArsI	GACNNNNNNTTYG	4 cut(s)	300, 332, 799, 831
AsiGI	ACCGGT	2 cut(s)	158, 809
Asp700I	GAANNNNTTC	1 cut(s)	770
AspLEI	GCGC	2 cut(s)	196, 497
AspS9I	GGNCC	3 cut(s)	170, 637, 723
AsuC2I	CCSGG	1 cut(s)	611
AsuHPI	GGTGA	2 cut(s)	574, 752
AvaI	CYCGRG	1 cut(s)	402
AvaII	GGWCC	3 cut(s)	170, 637, 723
BaeGI	GKGCMC	2 cut(s)	478, 658
BanI	GGYRCC	2 cut(s)	475, 655
BanII	GRGCYC	1 cut(s)	337
BauI	CACGAG	1 cut(s)	796
BbsI	GAAGAC	1 cut(s)	286
BccI	CCATC	6 cut(s)	230, 371, 404, 698, 827, 866
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BciT130I	CCWGG	1 cut(s)	492
BclI	TGATCA	1 cut(s)	714
BcnI	CCSGG	1 cut(s)	611
BcoDI	GTCTC	2 cut(s)	674, 799
BfaI	CTAG	2 cut(s)	146, 536
Bme1390I	CCNGG	2 cut(s)	492, 611
Bme18I	GGWCC	3 cut(s)	170, 637, 723
BmeT110I	CYCGRG	1 cut(s)	402
BmgT120I	GGNCC	3 cut(s)	170, 637, 723
BmiI	GGNNCC	4 cut(s)	336, 477, 638, 657
BmrFI	CCNGG	2 cut(s)	492, 611
BmsI	GCATC	3 cut(s)	151, 380, 548
BpiI	GAAGAC	1 cut(s)	286
Bpu10I	CCTNAGC	1 cut(s)	358
BpuMI	CCSGG	1 cut(s)	611
Bsa29I	ATCGAT	1 cut(s)	519
BsaI	GGTCTC	2 cut(s)	674, 799
BsaWI	WCCGGW	4 cut(s)	113, 158, 523, 809
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 237, 646, 665
Bse118I	RCCGGY	3 cut(s)	158, 478, 809
Bse1I	ACTGG	3 cut(s)	28, 690, 782
Bse3DI	GCAATG	1 cut(s)	752
BseBI	CCWGG	1 cut(s)	492
BseCI	ATCGAT	1 cut(s)	519
BseGI	GGATG	1 cut(s)	539
BseLI	CCNNNNNNNGG	4 cut(s)	206, 237, 646, 665
BseMI	GCAATG	1 cut(s)	752
BseMII	CTCAG	2 cut(s)	23, 152
BseNI	ACTGG	3 cut(s)	28, 690, 782
BseRI	GAGGAG	1 cut(s)	327
BseSI	GKGCMC	2 cut(s)	478, 658
BsgI	GTGCAG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	482
BshNI	GGYRCC	2 cut(s)	475, 655
BshTI	ACCGGT	2 cut(s)	158, 809
BshVI	ATCGAT	1 cut(s)	519
BsiHKCI	CYCGRG	1 cut(s)	402
BsiSI	CCGG	7 cut(s)	114, 159, 479, 524, 543, 611, 810
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	4 cut(s)	206, 237, 646, 665
BsmAI	GTCTC	2 cut(s)	674, 799
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	1 cut(s)	482
Bso31I	GGTCTC	2 cut(s)	674, 799
BsoBI	CYCGRG	1 cut(s)	402
Bsp1286I	GDGCHC	3 cut(s)	337, 478, 658
Bsp143I	GATC	5 cut(s)	102, 134, 516, 520, 714
BspACI	CCGC	5 cut(s)	129, 366, 414, 546, 790
BspANI	GGCC	1 cut(s)	482
BspCNI	CTCAG	2 cut(s)	22, 151
BspDI	ATCGAT	1 cut(s)	519
BspHI	TCATGA	2 cut(s)	43, 340
BspLI	GGNNCC	4 cut(s)	336, 477, 638, 657
BspPI	GGATC	2 cut(s)	142, 515
BspT107I	GGYRCC	2 cut(s)	475, 655
BspTNI	GGTCTC	2 cut(s)	674, 799
BsrDI	GCAATG	1 cut(s)	752
BsrFI	RCCGGY	3 cut(s)	158, 478, 809
BsrI	ACTGG	3 cut(s)	28, 690, 782
BssAI	RCCGGY	3 cut(s)	158, 478, 809
BssMI	GATC	5 cut(s)	102, 134, 516, 520, 714
BssSI	CACGAG	1 cut(s)	796
Bst2BI	CACGAG	1 cut(s)	796
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	4 cut(s)	562, 760, 853, 895
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	3 cut(s)	9, 138, 358
BstEII	GGTNACC	1 cut(s)	263
BstF5I	GGATG	1 cut(s)	539
BstHHI	GCGC	2 cut(s)	196, 497
BstKTI	GATC	5 cut(s)	105, 137, 519, 523, 717
BstMAI	GTCTC	2 cut(s)	674, 799
BstMBI	GATC	5 cut(s)	102, 134, 516, 520, 714
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNI	CCWGG	1 cut(s)	492
BstPI	GGTNACC	1 cut(s)	263
BstSCI	CCNGG	2 cut(s)	490, 609
BstSLI	GKGCMC	2 cut(s)	478, 658
BstV2I	GAAGAC	1 cut(s)	286
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
Bsu15I	ATCGAT	1 cut(s)	519
BsuRI	GGCC	1 cut(s)	482
BsuTUI	ATCGAT	1 cut(s)	519
BtsCI	GGATG	1 cut(s)	539
BtsIMutI	CAGTG	4 cut(s)	471, 697, 789, 858
Cac8I	GCNNGC	1 cut(s)	364
CciI	TCATGA	2 cut(s)	43, 340
CfoI	GCGC	2 cut(s)	196, 497
Cfr10I	RCCGGY	3 cut(s)	158, 478, 809
Cfr13I	GGNCC	3 cut(s)	170, 637, 723
ClaI	ATCGAT	1 cut(s)	519
Csp6I	GTAC	1 cut(s)	756
CspAI	ACCGGT	2 cut(s)	158, 809
CspCI	CAANNNNNGTGG	2 cut(s)	112, 147
CviAII	CATG	6 cut(s)	44, 55, 225, 290, 341, 591
CviQI	GTAC	1 cut(s)	756
DdeI	CTNAG	3 cut(s)	9, 138, 358
DpnI	GATC	5 cut(s)	104, 136, 518, 522, 716
DpnII	GATC	5 cut(s)	102, 134, 516, 520, 714
EaeI	YGGCCR	1 cut(s)	480
Eco24I	GRGCYC	1 cut(s)	337
Eco31I	GGTCTC	2 cut(s)	674, 799
Eco47I	GGWCC	3 cut(s)	170, 637, 723
Eco57I	CTGAAG	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	402
Eco91I	GGTNACC	1 cut(s)	263
EcoO109I	RGGNCCY	1 cut(s)	170
EcoO65I	GGTNACC	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	490
EcoT38I	GRGCYC	1 cut(s)	337
FaeI	CATG	6 cut(s)	47, 58, 228, 293, 344, 594
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	6 cut(s)	43, 54, 224, 289, 340, 590
FauI	CCCGC	2 cut(s)	539, 783
FauNDI	CATATG	1 cut(s)	719
FbaI	TGATCA	1 cut(s)	714
FblI	GTMKAC	1 cut(s)	528
FokI	GGATG	1 cut(s)	526
FriOI	GRGCYC	1 cut(s)	337
FspBI	CTAG	2 cut(s)	146, 536
GlaI	GCGC	2 cut(s)	195, 496
HaeIII	GGCC	1 cut(s)	482
HapII	CCGG	7 cut(s)	114, 159, 479, 524, 543, 611, 810
HhaI	GCGC	2 cut(s)	196, 497
Hin1II	CATG	6 cut(s)	47, 58, 228, 293, 344, 594
Hin6I	GCGC	2 cut(s)	194, 495
HinP1I	GCGC	2 cut(s)	194, 495
HincII	GTYRAC	3 cut(s)	319, 681, 807
HindII	GTYRAC	3 cut(s)	319, 681, 807
HinfI	GANTC	2 cut(s)	351, 863
HpaII	CCGG	7 cut(s)	114, 159, 479, 524, 543, 611, 810
HphI	GGTGA	2 cut(s)	574, 752
Hpy166II	GTNNAC	5 cut(s)	212, 319, 529, 681, 807
Hpy188I	TCNGA	5 cut(s)	12, 94, 376, 700, 832
Hpy188III	TCNNGA	4 cut(s)	44, 106, 341, 580
Hpy8I	GTNNAC	5 cut(s)	212, 319, 529, 681, 807
HpyAV	CCTTC	3 cut(s)	254, 731, 746
HpyCH4III	ACNGT	4 cut(s)	562, 760, 853, 895
HpyCH4IV	ACGT	1 cut(s)	846
HpyCH4V	TGCA	1 cut(s)	99
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	3 cut(s)	9, 138, 358
HpySE526I	ACGT	1 cut(s)	846
Hsp92II	CATG	6 cut(s)	47, 58, 228, 293, 344, 594
HspAI	GCGC	2 cut(s)	194, 495
Ksp22I	TGATCA	1 cut(s)	714
Kzo9I	GATC	5 cut(s)	102, 134, 516, 520, 714
LmnI	GCTCC	2 cut(s)	340, 368
LweI	GCATC	3 cut(s)	151, 380, 548
MaeI	CTAG	2 cut(s)	146, 536
MaeII	ACGT	1 cut(s)	846
MaeIII	GTNAC	4 cut(s)	263, 457, 847, 889
MalI	GATC	5 cut(s)	104, 136, 518, 522, 716
MboI	GATC	5 cut(s)	102, 134, 516, 520, 714
MboII	GAAGA	3 cut(s)	25, 286, 713
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	3 cut(s)	337, 478, 658
MluCI	AATT	2 cut(s)	243, 814
MlyI	GAGTC	2 cut(s)	345, 872
MnlI	CCTC	5 cut(s)	15, 18, 97, 161, 348
MroXI	GAANNNNTTC	1 cut(s)	770
MseI	TTAA	1 cut(s)	155
MslI	CAYNNNNRTG	2 cut(s)	464, 784
MspA1I	CMGCKG	1 cut(s)	129
MspI	CCGG	7 cut(s)	114, 159, 479, 524, 543, 611, 810
MspR9I	CCNGG	2 cut(s)	492, 611
MvaI	CCWGG	1 cut(s)	492
MwoI	GCNNNNNNNGC	1 cut(s)	368
NciI	CCSGG	1 cut(s)	611
NdeI	CATATG	1 cut(s)	719
NdeII	GATC	5 cut(s)	102, 134, 516, 520, 714
NlaIII	CATG	6 cut(s)	47, 58, 228, 293, 344, 594
NlaIV	GGNNCC	4 cut(s)	336, 477, 638, 657
NmeAIII	GCCGAG	1 cut(s)	377
NmuCI	GTSAC	2 cut(s)	457, 889
OliI	CACNNNNGTG	2 cut(s)	464, 784
PaeR7I	CTCGAG	1 cut(s)	402
PagI	TCATGA	2 cut(s)	43, 340
PdmI	GAANNNNTTC	1 cut(s)	770
PflMI	CCANNNNNTGG	1 cut(s)	206
PinAI	ACCGGT	2 cut(s)	158, 809
PleI	GAGTC	2 cut(s)	345, 871
PpsI	GAGTC	2 cut(s)	345, 871
PpuMI	RGGWCCY	1 cut(s)	170
Psp1406I	AACGTT	1 cut(s)	846
Psp5II	RGGWCCY	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	490
PspEI	GGTNACC	1 cut(s)	263
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	4 cut(s)	336, 477, 638, 657
PspPI	GGNCC	3 cut(s)	170, 637, 723
PspPPI	RGGWCCY	1 cut(s)	170
PspXI	VCTCGAGB	1 cut(s)	402
PsuI	RGATCY	1 cut(s)	134
RsaI	GTAC	1 cut(s)	757
RsaNI	GTAC	1 cut(s)	756
RseI	CAYNNNNRTG	2 cut(s)	464, 784
SaqAI	TTAA	1 cut(s)	155
Sau3AI	GATC	5 cut(s)	102, 134, 516, 520, 714
Sau96I	GGNCC	3 cut(s)	170, 637, 723
SchI	GAGTC	2 cut(s)	345, 872
ScrFI	CCNGG	2 cut(s)	492, 611
SduI	GDGCHC	3 cut(s)	337, 478, 658
SfaNI	GCATC	3 cut(s)	151, 380, 548
Sfr274I	CTCGAG	1 cut(s)	402
SinI	GGWCC	3 cut(s)	170, 637, 723
SlaI	CTCGAG	1 cut(s)	402
SmiMI	CAYNNNNRTG	2 cut(s)	464, 784
SmlI	CTYRAG	1 cut(s)	402
SmoI	CTYRAG	1 cut(s)	402
Sse9I	AATT	2 cut(s)	243, 814
SsiI	CCGC	5 cut(s)	129, 366, 414, 546, 790
SspMI	CTAG	2 cut(s)	146, 536
StyD4I	CCNGG	2 cut(s)	490, 609
TaaI	ACNGT	4 cut(s)	562, 760, 853, 895
TaiI	ACGT	1 cut(s)	849
TaqI	TCGA	4 cut(s)	166, 403, 519, 581
TasI	AATT	2 cut(s)	243, 814
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	4 cut(s)	471, 697, 789, 858
TseFI	GTSAC	2 cut(s)	457, 889
Tsp45I	GTSAC	2 cut(s)	457, 889
TspDTI	ATGAA	3 cut(s)	32, 213, 357
TspGWI	ACGGA	2 cut(s)	629, 644
TspRI	CASTG	4 cut(s)	471, 697, 789, 858
Van91I	CCANNNNNTGG	1 cut(s)	206
VpaK11BI	GGWCC	3 cut(s)	170, 637, 723
XhoI	CTCGAG	1 cut(s)	402
XmiI	GTMKAC	1 cut(s)	528
XmnI	GAANNNNTTC	1 cut(s)	770
XspI	CTAG	2 cut(s)	146, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.