Belongs to the WD repeat SEC13 family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G30050 AT3G01340 AT3G01340 |
| fragaria_vesca | FvH4_6g32220 FvH4_6g32220 FvH4_6g32220 FvH4_6g32220 FvH4_6g32220 FvH4_6g32220 FvH4_6g49840 FvH4_6g49840 FvH4_6g49840 |
| malus_domestica | MD09G1041000.v1.1 MD09G1205500.v1.1 MD17G1042300.v1.1 MD17G1185700.v1.1 |
| prunus_persica | Prupe.3G060800_v2.0.a1 Prupe.3G276700_v2.0.a1 |
| pyrus_communis | pycom09g12210 pycom111g03200 pycom17g03790 pycom17g19510 |
| rosa_chinensis | RchiOBHm_Chr2g0140101 RchiOBHm_Chr2g0170031 |
| rosa_laevigata | RLG00000010169 RLG00000019849 RLG00000021917 |
| rosa_multiflora | Rmu_co8506925.1_g000001 Rmu_sc0003244.1_g000028 Rmu_sc0013078.1_g000015 Rmu_ssc0000389.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00081680 Rroxscaffold_2G00105060 |
| rosa_rugosa | Rorug02G0361100 Rorug02G0361200 Rorug02G0545000 Rorug02G0545100 |
| rosa_samantha | Rh2AG411800 Rh2AG617500 Rh2BG422100 Rh2BG628800 Rh2CG397900 Rh2CG598300 Rh2DG431500 Rh2DG640000 Rh2DG640600 Rh4BG007800 |
| rosa_wichuraiana | Rw2G033740 Rw2G051120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 58 |
| AccI | GTMKAC | 1 cut(s) | 273 |
| AclWI | GGATC | 1 cut(s) | 386 |
| AcoI | YGGCCR | 1 cut(s) | 132 |
| AfaI | GTAC | 1 cut(s) | 522 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 68, 189, 347 |
| AflIII | ACRYGT | 1 cut(s) | 299 |
| AgsI | TTSAA | 3 cut(s) | 23, 169, 358 |
| AhlI | ACTAGT | 1 cut(s) | 523 |
| AjiI | CACGTC | 1 cut(s) | 302 |
| AlwI | GGATC | 1 cut(s) | 386 |
| AoxI | GGCC | 1 cut(s) | 132 |
| AsuC2I | CCSGG | 1 cut(s) | 185 |
| AsuHPI | GGTGA | 5 cut(s) | 52, 130, 155, 290, 449 |
| BaeGI | GKGCMC | 1 cut(s) | 61 |
| BalI | TGGCCA | 1 cut(s) | 134 |
| BanI | GGYRCC | 1 cut(s) | 58 |
| BccI | CCATC | 2 cut(s) | 230, 402 |
| BcnI | CCSGG | 1 cut(s) | 185 |
| BcuI | ACTAGT | 1 cut(s) | 523 |
| BfaI | CTAG | 1 cut(s) | 524 |
| Bme1390I | CCNGG | 1 cut(s) | 185 |
| BmgBI | CACGTC | 1 cut(s) | 302 |
| BmiI | GGNNCC | 1 cut(s) | 60 |
| BmrFI | CCNGG | 1 cut(s) | 185 |
| BpmI | CTGGAG | 1 cut(s) | 211 |
| BpuMI | CCSGG | 1 cut(s) | 185 |
| BsaJI | CCNNGG | 2 cut(s) | 135, 183 |
| BsaWI | WCCGGW | 1 cut(s) | 212 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 68, 189, 347 |
| Bse1I | ACTGG | 1 cut(s) | 434 |
| Bse3DI | GCAATG | 1 cut(s) | 155 |
| BseDI | CCNNGG | 2 cut(s) | 135, 183 |
| BseGI | GGATG | 1 cut(s) | 394 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 68, 189, 347 |
| BseMI | GCAATG | 1 cut(s) | 155 |
| BseNI | ACTGG | 1 cut(s) | 434 |
| BseSI | GKGCMC | 1 cut(s) | 61 |
| BshFI | GGCC | 1 cut(s) | 134 |
| BshNI | GGYRCC | 1 cut(s) | 58 |
| BsiSI | CCGG | 2 cut(s) | 185, 213 |
| BslFI | GGGAC | 1 cut(s) | 84 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 68, 189, 347 |
| BsmFI | GGGAC | 1 cut(s) | 84 |
| BsnI | GGCC | 1 cut(s) | 134 |
| Bsp1286I | GDGCHC | 1 cut(s) | 61 |
| Bsp143I | GATC | 1 cut(s) | 378 |
| BspANI | GGCC | 1 cut(s) | 134 |
| BspLI | GGNNCC | 1 cut(s) | 60 |
| BspPI | GGATC | 1 cut(s) | 386 |
| BspT107I | GGYRCC | 1 cut(s) | 58 |
| BsrDI | GCAATG | 1 cut(s) | 155 |
| BsrI | ACTGG | 1 cut(s) | 434 |
| BssECI | CCNNGG | 2 cut(s) | 135, 183 |
| BssMI | GATC | 1 cut(s) | 378 |
| BssT1I | CCWWGG | 1 cut(s) | 135 |
| Bst4CI | ACNGT | 3 cut(s) | 115, 130, 278 |
| BstC8I | GCNNGC | 1 cut(s) | 225 |
| BstDEI | CTNAG | 1 cut(s) | 305 |
| BstF5I | GGATG | 1 cut(s) | 394 |
| BstKTI | GATC | 1 cut(s) | 381 |
| BstMBI | GATC | 1 cut(s) | 378 |
| BstSCI | CCNGG | 1 cut(s) | 183 |
| BstSLI | GKGCMC | 1 cut(s) | 61 |
| BsuRI | GGCC | 1 cut(s) | 134 |
| BtrI | CACGTC | 1 cut(s) | 302 |
| BtsCI | GGATG | 1 cut(s) | 394 |
| BtsIMutI | CAGTG | 1 cut(s) | 120 |
| Cac8I | GCNNGC | 1 cut(s) | 225 |
| Csp6I | GTAC | 1 cut(s) | 521 |
| CviAII | CATG | 2 cut(s) | 54, 201 |
| CviJI | RGCY | 3 cut(s) | 134, 227, 233 |
| CviKI_1 | RGCY | 3 cut(s) | 134, 227, 233 |
| CviQI | GTAC | 1 cut(s) | 521 |
| DdeI | CTNAG | 1 cut(s) | 305 |
| DpnI | GATC | 1 cut(s) | 380 |
| DpnII | GATC | 1 cut(s) | 378 |
| EaeI | YGGCCR | 1 cut(s) | 132 |
| Eco130I | CCWWGG | 1 cut(s) | 135 |
| Eco32I | GATATC | 1 cut(s) | 579 |
| EcoRV | GATATC | 1 cut(s) | 579 |
| EcoT14I | CCWWGG | 1 cut(s) | 135 |
| ErhI | CCWWGG | 1 cut(s) | 135 |
| FaeI | CATG | 2 cut(s) | 57, 204 |
| FaiI | YATR | 9 cut(s) | 55, 202, 385, 402, 449, 455, 575, 590, 625 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 448, 480 |
| FaqI | GGGAC | 1 cut(s) | 84 |
| FatI | CATG | 2 cut(s) | 53, 200 |
| FblI | GTMKAC | 1 cut(s) | 273 |
| FokI | GGATG | 1 cut(s) | 381 |
| FspBI | CTAG | 1 cut(s) | 524 |
| GsuI | CTGGAG | 1 cut(s) | 211 |
| HaeIII | GGCC | 1 cut(s) | 134 |
| HapII | CCGG | 2 cut(s) | 185, 213 |
| Hin1II | CATG | 2 cut(s) | 57, 204 |
| HincII | GTYRAC | 1 cut(s) | 274 |
| HindII | GTYRAC | 1 cut(s) | 274 |
| HinfI | GANTC | 1 cut(s) | 266 |
| HpaII | CCGG | 2 cut(s) | 185, 213 |
| HphI | GGTGA | 5 cut(s) | 52, 130, 155, 290, 449 |
| Hpy166II | GTNNAC | 2 cut(s) | 84, 274 |
| Hpy188I | TCNGA | 1 cut(s) | 415 |
| Hpy188III | TCNNGA | 1 cut(s) | 190 |
| Hpy8I | GTNNAC | 2 cut(s) | 84, 274 |
| Hpy99I | CGWCG | 1 cut(s) | 278 |
| HpyAV | CCTTC | 5 cut(s) | 29, 134, 154, 163, 526 |
| HpyCH4III | ACNGT | 3 cut(s) | 115, 130, 278 |
| HpyCH4IV | ACGT | 1 cut(s) | 301 |
| HpyCH4V | TGCA | 3 cut(s) | 28, 462, 623 |
| HpyF3I | CTNAG | 1 cut(s) | 305 |
| HpySE526I | ACGT | 1 cut(s) | 301 |
| Hsp92II | CATG | 2 cut(s) | 57, 204 |
| Kzo9I | GATC | 1 cut(s) | 378 |
| LpnPI | CCDG | 9 cut(s) | 27, 89, 175, 198, 209, 226, 354, 415, 420 |
| MaeI | CTAG | 1 cut(s) | 524 |
| MaeII | ACGT | 1 cut(s) | 301 |
| MaeIII | GTNAC | 3 cut(s) | 204, 250, 563 |
| MalI | GATC | 1 cut(s) | 380 |
| MboI | GATC | 1 cut(s) | 378 |
| MhlI | GDGCHC | 1 cut(s) | 61 |
| MlsI | TGGCCA | 1 cut(s) | 134 |
| MluCI | AATT | 3 cut(s) | 358, 570, 605 |
| MluNI | TGGCCA | 1 cut(s) | 134 |
| MnlI | CCTC | 2 cut(s) | 148, 186 |
| Mox20I | TGGCCA | 1 cut(s) | 134 |
| MscI | TGGCCA | 1 cut(s) | 134 |
| MseI | TTAA | 2 cut(s) | 177, 510 |
| MslI | CAYNNNNRTG | 1 cut(s) | 399 |
| Msp20I | TGGCCA | 1 cut(s) | 134 |
| MspI | CCGG | 2 cut(s) | 185, 213 |
| MspR9I | CCNGG | 1 cut(s) | 185 |
| NciI | CCSGG | 1 cut(s) | 185 |
| NdeII | GATC | 1 cut(s) | 378 |
| NlaIII | CATG | 2 cut(s) | 57, 204 |
| NlaIV | GGNNCC | 1 cut(s) | 60 |
| NmuCI | GTSAC | 2 cut(s) | 204, 563 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 525 |
| PfeI | GAWTC | 1 cut(s) | 266 |
| PspN4I | GGNNCC | 1 cut(s) | 60 |
| RsaI | GTAC | 1 cut(s) | 522 |
| RsaNI | GTAC | 1 cut(s) | 521 |
| RseI | CAYNNNNRTG | 1 cut(s) | 399 |
| SalI | GTCGAC | 1 cut(s) | 272 |
| SaqAI | TTAA | 2 cut(s) | 177, 510 |
| Sau3AI | GATC | 1 cut(s) | 378 |
| ScrFI | CCNGG | 1 cut(s) | 185 |
| SduI | GDGCHC | 1 cut(s) | 61 |
| SetI | ASST | 6 cut(s) | 145, 165, 304, 316, 518, 622 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 399 |
| SpeI | ACTAGT | 1 cut(s) | 523 |
| Sse9I | AATT | 3 cut(s) | 358, 570, 605 |
| SspMI | CTAG | 1 cut(s) | 524 |
| StyD4I | CCNGG | 1 cut(s) | 183 |
| StyI | CCWWGG | 1 cut(s) | 135 |
| TaaI | ACNGT | 3 cut(s) | 115, 130, 278 |
| TaiI | ACGT | 1 cut(s) | 304 |
| TaqI | TCGA | 1 cut(s) | 273 |
| TasI | AATT | 3 cut(s) | 358, 570, 605 |
| TfiI | GAWTC | 1 cut(s) | 266 |
| Tru1I | TTAA | 2 cut(s) | 177, 510 |
| Tru9I | TTAA | 2 cut(s) | 177, 510 |
| TscAI | CASTG | 1 cut(s) | 120 |
| TseFI | GTSAC | 2 cut(s) | 204, 563 |
| Tsp45I | GTSAC | 2 cut(s) | 204, 563 |
| TspGWI | ACGGA | 1 cut(s) | 123 |
| TspRI | CASTG | 1 cut(s) | 120 |
| XmiI | GTMKAC | 1 cut(s) | 273 |
| XspI | CTAG | 1 cut(s) | 524 |