Prupe.3G060800_v2.0.a1

Belongs to the WD repeat SEC13 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0001675
Physical Location & Seq
Forward (+)
4374957 .. 4376892
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G060800.1

Sequence Viewer

Length: 906 bp
ATGCCTGCACAAAAGGTTGAGACTGGTCACCAAGACACCATCCACGATGTGGTTATGGACTACTATGGTAAGCGTCTCGCCACAGGTTCGGCGGACAACACCGTTAAGATAATCGGAGTCAGCAACTCGGCCTCTCAACATCTTGCAACTCTTACTGGTCACCAGGGACCTGTTTGGCAGGTTGCTTGGGCTCACCCCAAGTTCGGGTCTTTACTTGCTTCCTGTTCTTATGATGGGCGTGTTATACTGTGGAAGGAAGGGAATCAGAATGAGTGGATCCAGGCCCATATTTTTGATGACCACAAGTCTTCTGTCAACTCAATTGCTTGGGCTCCTCATGAACTCGGTCTTTGTTTGGCGTGCGGTTCTTCTGATGGGAACATTTCGGTTTTCACTGCAAGGGCGGATGGTGGTTGGGATACCTCGAGGATTGACCAAGCTCACCCAGTTGGTGTTACCTCTGTTTCATGGGCTCCCTCAACAGCCCCTGGTGCTCTTGTTGGTTCTGGTCTGCTTGACCCTGTTCAGAAGCTTTGTTCTGGTGGTTGTGATAATACTGTGAAGGTGTGGAAGCTTGGTAATGGGGTTTGGAAGCTGGACTGCTTTCCGGCTCTTCAAATGCATGTTGATTGGGTTAGGGATGTTGCCTGGGCTCCCAACTTGGGACTGCCAAAATCTACAATTGCCAGTGCCTCACAGGATGGGAAAGTTATCATATGGACTGTGGCCAAGGATGGGGATCAATGGGACGGTAAGGTGCTGCATGATTTCAATTCACCTGTTTATAAGGTCTCATGGTCGCTGACTGGAAACATAATAGCCGTGGCTGATGGGAACAACAACGTAACATTATGGAAGGAAGTAGTAGACGGGGAGTGGCAACAAGTGACAACAGTTGAGCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0002376 GO:0002474 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0005829 GO:0006810 GO:0006886 GO:0006888 GO:0006900 GO:0006901 GO:0006903 GO:0006996 GO:0008104 GO:0008150 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019882 GO:0019884 GO:0019886 GO:0022607 GO:0023051 GO:0023056 GO:0030117 GO:0030120 GO:0030127 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031080 GO:0031090 GO:0031410 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031982 GO:0031984 GO:0032006 GO:0032008 GO:0032991 GO:0033036 GO:0034613 GO:0034622 GO:0035459 GO:0035859 GO:0042175 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048002 GO:0048193 GO:0048194 GO:0048199 GO:0048207 GO:0048208 GO:0048475 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051668 GO:0061024 GO:0061700 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090110 GO:0090114 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:0098852 GO:1902531 GO:1902533
KEGG Pathways
Metabolic & Signaling
ko03013 ko04141 ko04150 map03013 map04141 map04150
Pfam Domains
Protein Families
WD40

Protein Analysis

302

Amino Acids

32.47

Weight (kDa)

5.58

Isoelectric Point (pI)

27.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 786
AbsI CCTCGAGG 1 cut(s) 424
Acc36I ACCTGC 1 cut(s) 169
AccB7I CCANNNNNTGG 1 cut(s) 49
AccI GTMKAC 1 cut(s) 867
AciI CCGC 3 cut(s) 92, 363, 404
AclWI GGATC 3 cut(s) 271, 284, 747
AcoI YGGCCR 1 cut(s) 726
AdeI CACNNNGTG 1 cut(s) 49
AfiI CCNNNNNNNGG 5 cut(s) 49, 203, 204, 662, 735
AgsI TTSAA 2 cut(s) 617, 772
AhdI GACNNNNNGTC 1 cut(s) 304
AjnI CCWGG 4 cut(s) 162, 279, 487, 647
AluBI AGCT 4 cut(s) 440, 532, 574, 595
AluI AGCT 4 cut(s) 440, 532, 574, 595
Alw21I GWGCWC 1 cut(s) 496
Alw26I GTCTC 3 cut(s) 14, 80, 796
AlwI GGATC 3 cut(s) 271, 284, 747
AlwNI CAGNNNCTG 1 cut(s) 488
Ama87I CYCGRG 1 cut(s) 424
AoxI GGCC 3 cut(s) 129, 282, 726
ApeKI GCWGC 1 cut(s) 760
AspS9I GGNCC 2 cut(s) 167, 283
AsuHPI GGTGA 5 cut(s) 20, 152, 185, 434, 768
AvaI CYCGRG 1 cut(s) 424
AvaII GGWCC 1 cut(s) 167
BalI TGGCCA 1 cut(s) 728
BamHI GGATCC 1 cut(s) 276
BanII GRGCYC 4 cut(s) 193, 334, 475, 655
BbsI GAAGAC 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 496
BbvI GCAGC 1 cut(s) 747
BccI CCATC 7 cut(s) 47, 227, 368, 401, 695, 728, 824
BceAI ACGGC 2 cut(s) 806, 886
BciT130I CCWGG 4 cut(s) 164, 281, 489, 649
BciVI GTATCC 1 cut(s) 412
BcoDI GTCTC 3 cut(s) 14, 80, 796
BfuAI ACCTGC 1 cut(s) 169
BfuI GTATCC 1 cut(s) 412
BisI GCNGC 1 cut(s) 761
BlsI GCNGC 1 cut(s) 762
Bme1390I CCNGG 4 cut(s) 164, 281, 489, 649
Bme18I GGWCC 1 cut(s) 167
BmeRI GACNNNNNGTC 1 cut(s) 304
BmeT110I CYCGRG 1 cut(s) 424
BmgT120I GGNCC 2 cut(s) 167, 283
BmiI GGNNCC 5 cut(s) 168, 278, 333, 474, 654
BmrFI CCNGG 4 cut(s) 164, 281, 489, 649
BmrI ACTGGG 1 cut(s) 440
BmuI ACTGGG 1 cut(s) 440
BpiI GAAGAC 1 cut(s) 300
BsaBI GATNNNNATC 1 cut(s) 738
BsaI GGTCTC 1 cut(s) 796
BsaJI CCNNGG 5 cut(s) 163, 487, 648, 729, 822
Bsc4I CCNNNNNNNGG 5 cut(s) 49, 203, 204, 662, 735
Bse1I ACTGG 5 cut(s) 28, 160, 446, 687, 811
Bse8I GATNNNNATC 1 cut(s) 738
BseBI CCWGG 4 cut(s) 164, 281, 489, 649
BseDI CCNNGG 5 cut(s) 163, 487, 648, 729, 822
BseGI GGATG 5 cut(s) 39, 412, 646, 706, 739
BseJI GATNNNNATC 1 cut(s) 738
BseLI CCNNNNNNNGG 5 cut(s) 49, 203, 204, 662, 735
BseNI ACTGG 5 cut(s) 28, 160, 446, 687, 811
BseRI GAGGAG 1 cut(s) 324
BseXI GCAGC 1 cut(s) 747
BshFI GGCC 3 cut(s) 131, 284, 728
BsiHKAI GWGCWC 1 cut(s) 496
BsiHKCI CYCGRG 1 cut(s) 424
BsiSI CCGG 1 cut(s) 608
BslFI GGGAC 3 cut(s) 180, 678, 761
BslI CCNNNNNNNGG 5 cut(s) 49, 203, 204, 662, 735
BsmAI GTCTC 3 cut(s) 14, 80, 796
BsmBI CGTCTC 1 cut(s) 80
BsmFI GGGAC 3 cut(s) 180, 678, 761
BsnI GGCC 3 cut(s) 131, 284, 728
Bso31I GGTCTC 1 cut(s) 796
BsoBI CYCGRG 1 cut(s) 424
Bsp1286I GDGCHC 5 cut(s) 193, 334, 475, 496, 655
Bsp143I GATC 2 cut(s) 276, 739
BspACI CCGC 3 cut(s) 92, 363, 404
BspANI GGCC 3 cut(s) 131, 284, 728
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 5 cut(s) 168, 278, 333, 474, 654
BspMI ACCTGC 1 cut(s) 169
BspPI GGATC 3 cut(s) 271, 284, 747
BspQI GCTCTTC 1 cut(s) 618
BspTNI GGTCTC 1 cut(s) 796
BsrI ACTGG 5 cut(s) 28, 160, 446, 687, 811
BssECI CCNNGG 5 cut(s) 163, 487, 648, 729, 822
BssMI GATC 2 cut(s) 276, 739
BssT1I CCWWGG 1 cut(s) 729
Bst2UI CCWGG 4 cut(s) 164, 281, 489, 649
Bst4CI ACNGT 6 cut(s) 103, 249, 559, 724, 752, 895
Bst6I CTCTTC 1 cut(s) 618
BstC8I GCNNGC 2 cut(s) 6, 361
BstDSI CCRYGG 1 cut(s) 822
BstEII GGTNACC 2 cut(s) 26, 158
BstF5I GGATG 5 cut(s) 39, 412, 646, 706, 739
BstKTI GATC 2 cut(s) 279, 742
BstMAI GTCTC 3 cut(s) 14, 80, 796
BstMBI GATC 2 cut(s) 276, 739
BstMWI GCNNNNNNNGC 1 cut(s) 491
BstNI CCWGG 4 cut(s) 164, 281, 489, 649
BstNSI RCATGY 1 cut(s) 626
BstPI GGTNACC 2 cut(s) 26, 158
BstSCI CCNGG 4 cut(s) 162, 279, 487, 647
BstV1I GCAGC 1 cut(s) 747
BstV2I GAAGAC 1 cut(s) 300
BstX2I RGATCY 1 cut(s) 276
BstYI RGATCY 1 cut(s) 276
BsuI GTATCC 1 cut(s) 412
BsuRI GGCC 3 cut(s) 131, 284, 728
BtgI CCRYGG 1 cut(s) 822
BtsCI GGATG 5 cut(s) 39, 412, 646, 706, 739
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 2 cut(s) 393, 694
BveI ACCTGC 1 cut(s) 169
Cac8I GCNNGC 2 cut(s) 6, 361
CaiI CAGNNNCTG 1 cut(s) 488
CciI TCATGA 1 cut(s) 337
Cfr13I GGNCC 2 cut(s) 167, 283
CseI GACGC 1 cut(s) 62
CviAII CATG 5 cut(s) 338, 468, 623, 764, 795
DpnI GATC 2 cut(s) 278, 741
DpnII GATC 2 cut(s) 276, 739
DraIII CACNNNGTG 1 cut(s) 49
DriI GACNNNNNGTC 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 726
Eam1104I CTCTTC 1 cut(s) 618
Eam1105I GACNNNNNGTC 1 cut(s) 304
EarI CTCTTC 1 cut(s) 618
EciI GGCGGA 2 cut(s) 107, 419
Eco130I CCWWGG 1 cut(s) 729
Eco24I GRGCYC 4 cut(s) 193, 334, 475, 655
Eco31I GGTCTC 1 cut(s) 796
Eco47I GGWCC 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 424
Eco91I GGTNACC 2 cut(s) 26, 158
EcoO109I RGGNCCY 1 cut(s) 167
EcoO65I GGTNACC 2 cut(s) 26, 158
EcoRII CCWGG 4 cut(s) 162, 279, 487, 647
EcoT14I CCWWGG 1 cut(s) 729
EcoT22I ATGCAT 1 cut(s) 624
EcoT38I GRGCYC 4 cut(s) 193, 334, 475, 655
ErhI CCWWGG 1 cut(s) 729
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 5 cut(s) 341, 471, 626, 767, 798
FaqI GGGAC 3 cut(s) 180, 678, 761
FatI CATG 5 cut(s) 337, 467, 622, 763, 794
FauNDI CATATG 1 cut(s) 716
FblI GTMKAC 1 cut(s) 867
Fnu4HI GCNGC 1 cut(s) 761
FokI GGATG 5 cut(s) 26, 419, 653, 713, 746
FriOI GRGCYC 4 cut(s) 193, 334, 475, 655
Fsp4HI GCNGC 1 cut(s) 761
GluI GCNGC 1 cut(s) 761
HaeIII GGCC 3 cut(s) 131, 284, 728
HapII CCGG 1 cut(s) 608
HgaI GACGC 1 cut(s) 62
Hin1II CATG 5 cut(s) 341, 471, 626, 767, 798
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 2 cut(s) 530, 572
HinfI GANTC 2 cut(s) 117, 262
HpaII CCGG 1 cut(s) 608
HphI GGTGA 5 cut(s) 20, 152, 185, 434, 768
Hpy166II GTNNAC 2 cut(s) 316, 868
Hpy188I TCNGA 4 cut(s) 116, 267, 373, 528
Hpy188III TCNNGA 1 cut(s) 338
Hpy8I GTNNAC 2 cut(s) 316, 868
HpyAV CCTTC 4 cut(s) 247, 251, 556, 850
HpyCH4III ACNGT 6 cut(s) 103, 249, 559, 724, 752, 895
HpyCH4IV ACGT 1 cut(s) 843
HpyCH4V TGCA 5 cut(s) 8, 146, 398, 622, 763
HpyF10VI GCNNNNNNNGC 1 cut(s) 491
HpySE526I ACGT 1 cut(s) 843
Hsp92II CATG 5 cut(s) 341, 471, 626, 767, 798
Kzo9I GATC 2 cut(s) 276, 739
LguI GCTCTTC 1 cut(s) 618
LmnI GCTCC 3 cut(s) 337, 478, 658
Lsp1109I GCAGC 1 cut(s) 747
MaeII ACGT 1 cut(s) 843
MaeIII GTNAC 5 cut(s) 26, 158, 454, 844, 886
MalI GATC 2 cut(s) 278, 741
MboI GATC 2 cut(s) 276, 739
MboII GAAGA 3 cut(s) 300, 360, 605
MfeI CAATTG 2 cut(s) 321, 681
MflI RGATCY 1 cut(s) 276
MhlI GDGCHC 5 cut(s) 193, 334, 475, 496, 655
MlsI TGGCCA 1 cut(s) 728
MluCI AATT 3 cut(s) 321, 681, 772
MluNI TGGCCA 1 cut(s) 728
MlyI GAGTC 1 cut(s) 126
MnlI CCTC 7 cut(s) 142, 345, 420, 433, 469, 487, 703
Mox20I TGGCCA 1 cut(s) 728
Mph1103I ATGCAT 1 cut(s) 624
MscI TGGCCA 1 cut(s) 728
MseI TTAA 1 cut(s) 105
Msp20I TGGCCA 1 cut(s) 728
MspI CCGG 1 cut(s) 608
MspR9I CCNGG 4 cut(s) 164, 281, 489, 649
MunI CAATTG 2 cut(s) 321, 681
MvaI CCWGG 4 cut(s) 164, 281, 489, 649
MwoI GCNNNNNNNGC 1 cut(s) 491
NdeI CATATG 1 cut(s) 716
NdeII GATC 2 cut(s) 276, 739
NlaIII CATG 5 cut(s) 341, 471, 626, 767, 798
NlaIV GGNNCC 5 cut(s) 168, 278, 333, 474, 654
NmeAIII GCCGAG 1 cut(s) 107
NmuCI GTSAC 3 cut(s) 26, 158, 886
NsiI ATGCAT 1 cut(s) 624
NspI RCATGY 1 cut(s) 626
PaeR7I CTCGAG 1 cut(s) 424
PagI TCATGA 1 cut(s) 337
PciSI GCTCTTC 1 cut(s) 618
PfeI GAWTC 1 cut(s) 262
PflMI CCANNNNNTGG 1 cut(s) 49
PkrI GCNGC 1 cut(s) 762
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PpuMI RGGWCCY 1 cut(s) 167
PsiI TTATAA 1 cut(s) 786
Psp5II RGGWCCY 1 cut(s) 167
Psp6I CCWGG 4 cut(s) 162, 279, 487, 647
PspEI GGTNACC 2 cut(s) 26, 158
PspGI CCWGG 4 cut(s) 162, 279, 487, 647
PspN4I GGNNCC 5 cut(s) 168, 278, 333, 474, 654
PspPI GGNCC 2 cut(s) 167, 283
PspPPI RGGWCCY 1 cut(s) 167
PspXI VCTCGAGB 1 cut(s) 424
PstNI CAGNNNCTG 1 cut(s) 488
PsuI RGATCY 1 cut(s) 276
SapI GCTCTTC 1 cut(s) 618
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 1 cut(s) 761
Sau3AI GATC 2 cut(s) 276, 739
Sau96I GGNCC 2 cut(s) 167, 283
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 4 cut(s) 164, 281, 489, 649
SduI GDGCHC 5 cut(s) 193, 334, 475, 496, 655
Sfr274I CTCGAG 1 cut(s) 424
SinI GGWCC 1 cut(s) 167
SlaI CTCGAG 1 cut(s) 424
SmlI CTYRAG 1 cut(s) 424
SmoI CTYRAG 1 cut(s) 424
Sse9I AATT 3 cut(s) 321, 681, 772
SsiI CCGC 3 cut(s) 92, 363, 404
StyD4I CCNGG 4 cut(s) 162, 279, 487, 647
StyI CCWWGG 1 cut(s) 729
TaaI ACNGT 6 cut(s) 103, 249, 559, 724, 752, 895
TaiI ACGT 1 cut(s) 846
TaqI TCGA 1 cut(s) 425
TaqII GACCGA 1 cut(s) 335
TasI AATT 3 cut(s) 321, 681, 772
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 2 cut(s) 400, 694
TseFI GTSAC 3 cut(s) 26, 158, 886
TseI GCWGC 1 cut(s) 760
Tsp45I GTSAC 3 cut(s) 26, 158, 886
TspDTI ATGAA 2 cut(s) 354, 456
TspRI CASTG 2 cut(s) 400, 694
Van91I CCANNNNNTGG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 167
XceI RCATGY 1 cut(s) 626
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
XhoI CTCGAG 1 cut(s) 424
XmiI GTMKAC 1 cut(s) 867
Zsp2I ATGCAT 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.