Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001675

Physical Location & Seq

Genomic Coordinates Reverse (-)

25456723 .. 25458690

Gene Structure 1968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G276700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGCCTGCGCAGAAGATTGAAACGGGTCACCAGGACATTGTCCACGATGTAGCCATGGATTACTATGGAAAGCGTCTAGCAACAGCTTCGTCCGATGCCACCATTAAGATAATTGGTGTCGGCAGTGGTTCACAGCATCTAGCTACATTGTCAGCTCATAGAGGCCCCGTCTGGGAGGTAGCTTGGGCGCATCCCAAGTTTGGGTCACTCCTTGCTTCCTGTTCTTATGATGGCCAGGTGATAATTTGGAAGGAGGGTAATCCAAATGAGTGGCAACAGGCTCATGTGTTTAATGATCACAAGTCATCTGTAAATTCCATTGCTTGGGCACCTCATGAACTTGGCCTTAGCTTAGCTTGTGGTTCTTCTGATGGGAATATCTCGGTTTTCACTGCCAGGGCGGATGGTGGTTGGGACACCACTAGGATAGATCAAGCTCACCCCGTTGGAGTAACATCTGTTTCGTGGGCCCCATCCATGGCTCCTGGTGCTCTAGTTGGATCCGGTCTGCTTGATCCTGTTCATAAGCTGGCTTCTGGCGGGTGTGATAATACTGTGAAGGTGTGGAAGCTGTACAATGGGACATGGAAGATGGATTGCTTCCCTGCCCTTCAGATGCACCGTGATTGGGTGAGAGATGTAGCTTGGGCACCCAACTTGGGACTTCCCAAGTCCACAATTGCAAGTGCTTCACAGGATGGAACAGTAGTTATTTGGACTGTGGCCAAGGAAGGTGAGCAGTGGGAGGGCAATGTTTTGAAGGATTTTAAGACCCCGGTTTGGAGGGTGTCATGGTCACTAACCGGAAACTTACTTGCTGTGGCTGATGGAAATAACAATGTAACATTGTGGAAAGAATCTGTCGATGGAGAGTGGCAACAAGTGAGCACAGTCGACCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005829 GO:0006810 GO:0006888 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0031080 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0098588 GO:0098805 GO:0098852

KEGG Pathways

Metabolic & Signaling

ko03013 ko04141 ko04150 map03013 map04141 map04150

Pfam Domains

Protein Families

WD40

Protein Analysis

301

Amino Acids

32.48

Weight (kDa)

5.72

Isoelectric Point (pI)

25.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30050 AT3G01340 AT3G01340
fragaria_vesca	FvH4_6g32220 FvH4_6g32220 FvH4_6g32220 FvH4_6g32220 FvH4_6g32220 FvH4_6g32220 FvH4_6g49840 FvH4_6g49840 FvH4_6g49840
malus_domestica	MD09G1041000.v1.1 MD09G1205500.v1.1 MD17G1042300.v1.1 MD17G1185700.v1.1
prunus_persica	Prupe.3G060800_v2.0.a1 Prupe.3G276700_v2.0.a1
pyrus_communis	pycom09g12210 pycom111g03200 pycom17g03790 pycom17g19510
rosa_chinensis	RchiOBHm_Chr2g0140101 RchiOBHm_Chr2g0170031
rosa_laevigata	RLG00000010169 RLG00000019849 RLG00000021917
rosa_multiflora	Rmu_co8506925.1_g000001 Rmu_sc0003244.1_g000028 Rmu_sc0013078.1_g000015 Rmu_ssc0000389.1_g000004
rosa_roxburghii	Rroxscaffold_2G00081680 Rroxscaffold_2G00105060
rosa_rugosa	Rorug02G0361100 Rorug02G0361200 Rorug02G0545000 Rorug02G0545100
rosa_samantha	Rh2AG411800 Rh2AG617500 Rh2BG422100 Rh2BG628800 Rh2CG397900 Rh2CG598300 Rh2DG431500 Rh2DG640000 Rh2DG640600 Rh4BG007800
rosa_wichuraiana	Rw2G033740 Rw2G051120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	9
AccB1I	GGYRCC	2 cut(s)	328, 649
AccB7I	CCANNNNNTGG	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	894
AciI	CCGC	2 cut(s)	401, 540
AclWI	GGATC	3 cut(s)	495, 508, 509
AcoI	YGGCCR	2 cut(s)	232, 723
AcsI	RAATTY	1 cut(s)	313
AcuI	CTGAAG	1 cut(s)	596
AfaI	GTAC	1 cut(s)	575
AfiI	CCNNNNNNNGG	8 cut(s)	172, 200, 201, 324, 478, 628, 659, 780
AgsI	TTSAA	2 cut(s)	20, 760
AjnI	CCWGG	4 cut(s)	30, 234, 395, 484
Alw21I	GWGCWC	2 cut(s)	493, 890
AlwI	GGATC	3 cut(s)	495, 508, 509
AoxI	GGCC	5 cut(s)	163, 232, 343, 468, 723
ApaI	GGGCCC	1 cut(s)	472
ApoI	RAATTY	1 cut(s)	313
AspLEI	GCGC	2 cut(s)	10, 190
AspS9I	GGNCC	3 cut(s)	164, 468, 469
AsuC2I	CCSGG	1 cut(s)	776
AsuHPI	GGTGA	5 cut(s)	20, 250, 431, 643, 746
BaeGI	GKGCMC	3 cut(s)	331, 472, 652
BalI	TGGCCA	2 cut(s)	234, 725
BamHI	GGATCC	1 cut(s)	500
BanI	GGYRCC	2 cut(s)	328, 649
BanII	GRGCYC	1 cut(s)	472
Bbv12I	GWGCWC	2 cut(s)	493, 890
BccI	CCATC	8 cut(s)	224, 365, 398, 481, 586, 692, 821, 860
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BciT130I	CCWGG	4 cut(s)	32, 236, 397, 486
BclI	TGATCA	1 cut(s)	295
BcnI	CCSGG	1 cut(s)	776
BfaI	CTAG	4 cut(s)	77, 140, 423, 494
BlpI	GCTNAGC	1 cut(s)	352
Bme1390I	CCNGG	5 cut(s)	32, 236, 397, 486, 776
BmgT120I	GGNCC	3 cut(s)	164, 468, 469
BmiI	GGNNCC	7 cut(s)	166, 330, 470, 471, 483, 502, 651
BmrFI	CCNGG	5 cut(s)	32, 236, 397, 486, 776
BmsI	GCATC	4 cut(s)	85, 145, 199, 606
Bpu10I	CCTNAGC	1 cut(s)	347
Bpu1102I	GCTNAGC	1 cut(s)	352
BpuMI	CCSGG	1 cut(s)	776
BsaJI	CCNNGG	5 cut(s)	54, 396, 477, 726, 774
BsaWI	WCCGGW	2 cut(s)	503, 803
Bsc4I	CCNNNNNNNGG	8 cut(s)	172, 200, 201, 324, 478, 628, 659, 780
Bse3DI	GCAATG	2 cut(s)	318, 757
BseBI	CCWGG	4 cut(s)	32, 236, 397, 486
BseDI	CCNNGG	5 cut(s)	54, 396, 477, 726, 774
BseGI	GGATG	4 cut(s)	190, 409, 473, 703
BseLI	CCNNNNNNNGG	8 cut(s)	172, 200, 201, 324, 478, 628, 659, 780
BseMI	GCAATG	2 cut(s)	318, 757
BseSI	GKGCMC	3 cut(s)	331, 472, 652
BshFI	GGCC	5 cut(s)	165, 234, 345, 470, 725
BshNI	GGYRCC	2 cut(s)	328, 649
BsiHKAI	GWGCWC	2 cut(s)	493, 890
BsiSI	CCGG	3 cut(s)	504, 776, 804
BslFI	GGGAC	3 cut(s)	428, 595, 675
BslI	CCNNNNNNNGG	8 cut(s)	172, 200, 201, 324, 478, 628, 659, 780
BsmFI	GGGAC	3 cut(s)	428, 595, 675
BsnI	GGCC	5 cut(s)	165, 234, 345, 470, 725
Bsp120I	GGGCCC	1 cut(s)	468
Bsp1286I	GDGCHC	5 cut(s)	331, 472, 493, 652, 890
Bsp1407I	TGTACA	1 cut(s)	573
Bsp143I	GATC	4 cut(s)	295, 430, 500, 514
Bsp1720I	GCTNAGC	1 cut(s)	352
Bsp19I	CCATGG	2 cut(s)	54, 477
BspACI	CCGC	2 cut(s)	401, 540
BspANI	GGCC	5 cut(s)	165, 234, 345, 470, 725
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	7 cut(s)	166, 330, 470, 471, 483, 502, 651
BspPI	GGATC	3 cut(s)	495, 508, 509
BspT107I	GGYRCC	2 cut(s)	328, 649
BsrDI	GCAATG	2 cut(s)	318, 757
BsrGI	TGTACA	1 cut(s)	573
BssECI	CCNNGG	5 cut(s)	54, 396, 477, 726, 774
BssMI	GATC	4 cut(s)	295, 430, 500, 514
BssT1I	CCWWGG	3 cut(s)	54, 477, 726
Bst2UI	CCWGG	4 cut(s)	32, 236, 397, 486
Bst4CI	ACNGT	5 cut(s)	556, 623, 706, 721, 892
BstAUI	TGTACA	1 cut(s)	573
BstC8I	GCNNGC	2 cut(s)	6, 531
BstDEI	CTNAG	2 cut(s)	347, 352
BstDSI	CCRYGG	2 cut(s)	54, 477
BstEII	GGTNACC	1 cut(s)	26
BstF5I	GGATG	4 cut(s)	190, 409, 473, 703
BstHHI	GCGC	2 cut(s)	10, 190
BstKTI	GATC	4 cut(s)	298, 433, 503, 517
BstMBI	GATC	4 cut(s)	295, 430, 500, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNI	CCWGG	4 cut(s)	32, 236, 397, 486
BstPI	GGTNACC	1 cut(s)	26
BstSCI	CCNGG	5 cut(s)	30, 234, 395, 484, 774
BstSLI	GKGCMC	3 cut(s)	331, 472, 652
BstX2I	RGATCY	1 cut(s)	500
BstXI	CCANNNNNNTGG	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	500
BsuRI	GGCC	5 cut(s)	165, 234, 345, 470, 725
BtgI	CCRYGG	2 cut(s)	54, 477
BtsCI	GGATG	4 cut(s)	190, 409, 473, 703
BtsI	GCAGTG	3 cut(s)	130, 390, 746
BtsIMutI	CAGTG	3 cut(s)	130, 390, 746
Cac8I	GCNNGC	2 cut(s)	6, 531
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	2 cut(s)	10, 190
Cfr13I	GGNCC	3 cut(s)	164, 468, 469
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	574
CviAII	CATG	6 cut(s)	55, 284, 335, 478, 585, 792
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	2 cut(s)	347, 352
DpnI	GATC	4 cut(s)	297, 432, 502, 516
DpnII	GATC	4 cut(s)	295, 430, 500, 514
EaeI	YGGCCR	2 cut(s)	232, 723
EciI	GGCGGA	1 cut(s)	416
Eco130I	CCWWGG	3 cut(s)	54, 477, 726
Eco24I	GRGCYC	1 cut(s)	472
Eco57I	CTGAAG	1 cut(s)	596
Eco91I	GGTNACC	1 cut(s)	26
EcoO109I	RGGNCCY	2 cut(s)	164, 469
EcoO65I	GGTNACC	1 cut(s)	26
EcoRII	CCWGG	4 cut(s)	30, 234, 395, 484
EcoT14I	CCWWGG	3 cut(s)	54, 477, 726
EcoT38I	GRGCYC	1 cut(s)	472
ErhI	CCWWGG	3 cut(s)	54, 477, 726
FaeI	CATG	6 cut(s)	58, 287, 338, 481, 588, 795
FaqI	GGGAC	3 cut(s)	428, 595, 675
FatI	CATG	6 cut(s)	54, 283, 334, 477, 584, 791
FauI	CCCGC	1 cut(s)	533
FbaI	TGATCA	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	894
FokI	GGATG	4 cut(s)	177, 416, 460, 710
FriOI	GRGCYC	1 cut(s)	472
FspBI	CTAG	4 cut(s)	77, 140, 423, 494
FspI	TGCGCA	1 cut(s)	9
GlaI	GCGC	2 cut(s)	9, 189
HaeIII	GGCC	5 cut(s)	165, 234, 345, 470, 725
HapII	CCGG	3 cut(s)	504, 776, 804
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	2 cut(s)	10, 190
Hin1II	CATG	6 cut(s)	58, 287, 338, 481, 588, 795
Hin6I	GCGC	2 cut(s)	8, 188
HinP1I	GCGC	2 cut(s)	8, 188
HincII	GTYRAC	1 cut(s)	895
HindII	GTYRAC	1 cut(s)	895
HinfI	GANTC	1 cut(s)	857
HpaII	CCGG	3 cut(s)	504, 776, 804
HphI	GGTGA	5 cut(s)	20, 250, 431, 643, 746
Hpy166II	GTNNAC	4 cut(s)	43, 131, 675, 895
Hpy188I	TCNGA	3 cut(s)	94, 370, 615
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	4 cut(s)	43, 131, 675, 895
HpyAV	CCTTC	5 cut(s)	244, 553, 620, 725, 754
HpyCH4III	ACNGT	5 cut(s)	556, 623, 706, 721, 892
HpyCH4V	TGCA	2 cut(s)	619, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	2 cut(s)	347, 352
Hsp92II	CATG	6 cut(s)	58, 287, 338, 481, 588, 795
HspAI	GCGC	2 cut(s)	8, 188
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	4 cut(s)	295, 430, 500, 514
LmnI	GCTCC	1 cut(s)	487
LweI	GCATC	4 cut(s)	85, 145, 199, 606
MaeI	CTAG	4 cut(s)	77, 140, 423, 494
MaeIII	GTNAC	5 cut(s)	26, 204, 451, 795, 841
MalI	GATC	4 cut(s)	297, 432, 502, 516
MboI	GATC	4 cut(s)	295, 430, 500, 514
MboII	GAAGA	3 cut(s)	25, 357, 601
MfeI	CAATTG	1 cut(s)	678
MflI	RGATCY	1 cut(s)	500
MhlI	GDGCHC	5 cut(s)	331, 472, 493, 652, 890
MlsI	TGGCCA	2 cut(s)	234, 725
MluCI	AATT	4 cut(s)	111, 243, 313, 678
MluNI	TGGCCA	2 cut(s)	234, 725
MmeI	TCCRAC	2 cut(s)	427, 478
MnlI	CCTC	6 cut(s)	155, 169, 247, 342, 739, 777
Mox20I	TGGCCA	2 cut(s)	234, 725
MscI	TGGCCA	2 cut(s)	234, 725
MseI	TTAA	3 cut(s)	105, 291, 768
Msp20I	TGGCCA	2 cut(s)	234, 725
MspI	CCGG	3 cut(s)	504, 776, 804
MspR9I	CCNGG	5 cut(s)	32, 236, 397, 486, 776
MunI	CAATTG	1 cut(s)	678
MvaI	CCWGG	4 cut(s)	32, 236, 397, 486
MwoI	GCNNNNNNNGC	1 cut(s)	488
NciI	CCSGG	1 cut(s)	776
NcoI	CCATGG	2 cut(s)	54, 477
NdeII	GATC	4 cut(s)	295, 430, 500, 514
NlaIII	CATG	6 cut(s)	58, 287, 338, 481, 588, 795
NlaIV	GGNNCC	7 cut(s)	166, 330, 470, 471, 483, 502, 651
NmuCI	GTSAC	3 cut(s)	26, 204, 795
NsbI	TGCGCA	1 cut(s)	9
PagI	TCATGA	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	857
PflFI	GACNNNGTC	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	324
Psp6I	CCWGG	4 cut(s)	30, 234, 395, 484
PspEI	GGTNACC	1 cut(s)	26
PspGI	CCWGG	4 cut(s)	30, 234, 395, 484
PspN4I	GGNNCC	7 cut(s)	166, 330, 470, 471, 483, 502, 651
PspOMI	GGGCCC	1 cut(s)	468
PspPI	GGNCC	3 cut(s)	164, 468, 469
PsuI	RGATCY	1 cut(s)	500
PsyI	GACNNNGTC	1 cut(s)	38
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
SalI	GTCGAC	1 cut(s)	893
SaqAI	TTAA	3 cut(s)	105, 291, 768
Sau3AI	GATC	4 cut(s)	295, 430, 500, 514
Sau96I	GGNCC	3 cut(s)	164, 468, 469
ScrFI	CCNGG	5 cut(s)	32, 236, 397, 486, 776
SduI	GDGCHC	5 cut(s)	331, 472, 493, 652, 890
SfaNI	GCATC	4 cut(s)	85, 145, 199, 606
Sse9I	AATT	4 cut(s)	111, 243, 313, 678
SsiI	CCGC	2 cut(s)	401, 540
SspMI	CTAG	4 cut(s)	77, 140, 423, 494
StyD4I	CCNGG	5 cut(s)	30, 234, 395, 484, 774
StyI	CCWWGG	3 cut(s)	54, 477, 726
TaaI	ACNGT	5 cut(s)	556, 623, 706, 721, 892
TaqI	TCGA	2 cut(s)	864, 894
TasI	AATT	4 cut(s)	111, 243, 313, 678
TatI	WGTACW	1 cut(s)	573
TfiI	GAWTC	1 cut(s)	857
Tru1I	TTAA	3 cut(s)	105, 291, 768
Tru9I	TTAA	3 cut(s)	105, 291, 768
TscAI	CASTG	3 cut(s)	130, 397, 746
TseFI	GTSAC	3 cut(s)	26, 204, 795
Tsp45I	GTSAC	3 cut(s)	26, 204, 795
TspDTI	ATGAA	2 cut(s)	351, 512
TspRI	CASTG	3 cut(s)	130, 397, 746
Tth111I	GACNNNGTC	1 cut(s)	38
Van91I	CCANNNNNTGG	1 cut(s)	324
XapI	RAATTY	1 cut(s)	313
XmiI	GTMKAC	1 cut(s)	894
XspI	CTAG	4 cut(s)	77, 140, 423, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.