Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8506925.1

Orthogroup ID

OG0001675

Physical Location & Seq

Genomic Coordinates Reverse (-)

1386 .. 3157

Gene Structure 1772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8506925.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atgcctgcgcagaaggttgagactggtcaccaggacactgtccacgatgtggtcatggattactacggcaagcgcctggccacagcttcgtcggacaacaccattaagatagtgggagtgagcaactcggcctcgcaacatcttgcgaccctgactggtcaccagggacctgtttggcaggttgcttgggctcacccgaaattcgggtctttacttgcttcttgttcttatgacgggcgtgtcattctgtggaaggaaggcaatcagaacgagtggacacaagcccatgtttttgatgaccacaaatcgtctgtcaactccattgcttgggctcctcatgaactcggtctctgtttggcttgtggttcttccgatgggaatatctcggttttcactgctaaagcagacggtggttgggagaccacaaagatcgaccaagctcacccagttggtgtaacatctgtttcctgggctccctcaacagctcctggtgctcttgttggctctggtctgcttgacactgttcagaagctgtgttctggtggttgtgataacactgtaaaggtctggaagcttactaatggtgtttggaaaatggactgttttccagctcttcaaatgcatgttgattgggttagggatgttgcttgggcacctaacttgggactaccaaaatctactattgccagtgcatcacaggatgggaaagttattatctggactgtggccaaggatggggatcaatgggaaggtaaggtgctgcatgatttcaaggcacctgtttggagggtctcatggtcacttaccgggaacatattggccgtggctgatgggaacaacagcgtgacattgtggaaggaagaagttgatggggagtggcaacagatacctaatgcggaatatggacttcaagaacagccgagagctcatctaatttattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0002376 GO:0002474 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0005829 GO:0006810 GO:0006886 GO:0006888 GO:0006900 GO:0006901 GO:0006903 GO:0006996 GO:0008104 GO:0008150 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019882 GO:0019884 GO:0019886 GO:0022607 GO:0023051 GO:0023056 GO:0030117 GO:0030120 GO:0030127 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031080 GO:0031090 GO:0031410 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031982 GO:0031984 GO:0032006 GO:0032008 GO:0032991 GO:0033036 GO:0034613 GO:0034622 GO:0035459 GO:0035859 GO:0042175 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048002 GO:0048193 GO:0048194 GO:0048199 GO:0048207 GO:0048208 GO:0048475 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051668 GO:0061024 GO:0061700 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090110 GO:0090114 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:0098852 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko03013 ko04141 ko04150 map03013 map04141 map04150

Pfam Domains

Protein Families

WD40

Protein Analysis

313

Amino Acids

34.04

Weight (kDa)

5.69

Isoelectric Point (pI)

26.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30050 AT3G01340 AT3G01340
fragaria_vesca	FvH4_6g32220 FvH4_6g32220 FvH4_6g32220 FvH4_6g32220 FvH4_6g32220 FvH4_6g32220 FvH4_6g49840 FvH4_6g49840 FvH4_6g49840
malus_domestica	MD09G1041000.v1.1 MD09G1205500.v1.1 MD17G1042300.v1.1 MD17G1185700.v1.1
prunus_persica	Prupe.3G060800_v2.0.a1 Prupe.3G276700_v2.0.a1
pyrus_communis	pycom09g12210 pycom111g03200 pycom17g03790 pycom17g19510
rosa_chinensis	RchiOBHm_Chr2g0140101 RchiOBHm_Chr2g0170031
rosa_laevigata	RLG00000010169 RLG00000019849 RLG00000021917
rosa_multiflora	Rmu_co8506925.1_g000001 Rmu_sc0003244.1_g000028 Rmu_sc0013078.1_g000015 Rmu_ssc0000389.1_g000004
rosa_roxburghii	Rroxscaffold_2G00081680 Rroxscaffold_2G00105060
rosa_rugosa	Rorug02G0361100 Rorug02G0361200 Rorug02G0545000 Rorug02G0545100
rosa_samantha	Rh2AG411800 Rh2AG617500 Rh2BG422100 Rh2BG628800 Rh2CG397900 Rh2CG598300 Rh2DG431500 Rh2DG640000 Rh2DG640600 Rh4BG007800
rosa_wichuraiana	Rw2G033740 Rw2G051120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	239
Acc16I	TGCGCA	1 cut(s)	9
Acc36I	ACCTGC	1 cut(s)	169
AccB1I	GGYRCC	2 cut(s)	652, 775
AccB7I	CCANNNNNTGG	2 cut(s)	49, 327
AciI	CCGC	1 cut(s)	896
AclWI	GGATC	1 cut(s)	747
AcoI	YGGCCR	3 cut(s)	78, 726, 819
AcsI	RAATTY	1 cut(s)	200
AdeI	CACNNNGTG	1 cut(s)	49
AfiI	CCNNNNNNNGG	5 cut(s)	49, 203, 327, 662, 735
AgsI	TTSAA	3 cut(s)	617, 772, 911
AjnI	CCWGG	5 cut(s)	30, 75, 162, 467, 487
AluBI	AGCT	7 cut(s)	86, 440, 485, 532, 574, 611, 926
AluI	AGCT	7 cut(s)	86, 440, 485, 532, 574, 611, 926
Alw21I	GWGCWC	2 cut(s)	496, 928
Alw26I	GTCTC	4 cut(s)	14, 353, 413, 796
AlwI	GGATC	1 cut(s)	747
AlwNI	CAGNNNCTG	2 cut(s)	488, 532
AoxI	GGCC	4 cut(s)	78, 129, 726, 819
ApeKI	GCWGC	1 cut(s)	760
ApoI	RAATTY	1 cut(s)	200
ArsI	GACNNNNNNTTYG	4 cut(s)	191, 223, 297, 329
AspLEI	GCGC	2 cut(s)	10, 75
AspS9I	GGNCC	1 cut(s)	167
AsuC2I	CCSGG	1 cut(s)	808
AsuHPI	GGTGA	4 cut(s)	20, 152, 185, 434
AvaII	GGWCC	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	655
BalI	TGGCCA	2 cut(s)	80, 728
BanI	GGYRCC	2 cut(s)	652, 775
BanII	GRGCYC	4 cut(s)	193, 334, 475, 928
Bbv12I	GWGCWC	2 cut(s)	496, 928
BbvI	GCAGC	1 cut(s)	747
BccI	CCATC	5 cut(s)	368, 695, 728, 824, 863
BceAI	ACGGC	2 cut(s)	82, 806
BciT130I	CCWGG	5 cut(s)	32, 77, 164, 469, 489
BcnI	CCSGG	1 cut(s)	808
BcoDI	GTCTC	4 cut(s)	14, 353, 413, 796
BfoI	RGCGCY	1 cut(s)	76
BfuAI	ACCTGC	1 cut(s)	169
BisI	GCNGC	1 cut(s)	761
BlsI	GCNGC	1 cut(s)	762
Bme1390I	CCNGG	6 cut(s)	32, 77, 164, 469, 489, 808
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	5 cut(s)	168, 333, 474, 654, 777
BmrFI	CCNGG	6 cut(s)	32, 77, 164, 469, 489, 808
BmrI	ACTGGG	1 cut(s)	440
BmsI	GCATC	1 cut(s)	701
BmuI	ACTGGG	1 cut(s)	440
BpuMI	CCSGG	1 cut(s)	808
BsaBI	GATNNNNATC	1 cut(s)	738
BsaI	GGTCTC	3 cut(s)	353, 413, 796
BsaJI	CCNNGG	4 cut(s)	163, 468, 729, 822
Bsc4I	CCNNNNNNNGG	5 cut(s)	49, 203, 327, 662, 735
Bse1I	ACTGG	4 cut(s)	28, 160, 446, 687
Bse3DI	GCAATG	1 cut(s)	321
Bse8I	GATNNNNATC	1 cut(s)	738
BseBI	CCWGG	5 cut(s)	32, 77, 164, 469, 489
BseDI	CCNNGG	4 cut(s)	163, 468, 729, 822
BseGI	GGATG	3 cut(s)	646, 706, 739
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	5 cut(s)	49, 203, 327, 662, 735
BseMI	GCAATG	1 cut(s)	321
BseNI	ACTGG	4 cut(s)	28, 160, 446, 687
BseRI	GAGGAG	1 cut(s)	324
BseSI	GKGCMC	1 cut(s)	655
BseXI	GCAGC	1 cut(s)	747
BshFI	GGCC	4 cut(s)	80, 131, 728, 821
BshNI	GGYRCC	2 cut(s)	652, 775
BsiHKAI	GWGCWC	2 cut(s)	496, 928
BsiSI	CCGG	1 cut(s)	807
BslFI	GGGAC	2 cut(s)	180, 678
BslI	CCNNNNNNNGG	5 cut(s)	49, 203, 327, 662, 735
BsmAI	GTCTC	4 cut(s)	14, 353, 413, 796
BsmFI	GGGAC	2 cut(s)	180, 678
BsnI	GGCC	4 cut(s)	80, 131, 728, 821
Bso31I	GGTCTC	3 cut(s)	353, 413, 796
Bsp1286I	GDGCHC	6 cut(s)	193, 334, 475, 496, 655, 928
Bsp143I	GATC	2 cut(s)	429, 739
BspACI	CCGC	1 cut(s)	896
BspANI	GGCC	4 cut(s)	80, 131, 728, 821
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	5 cut(s)	168, 333, 474, 654, 777
BspMI	ACCTGC	1 cut(s)	169
BspPI	GGATC	1 cut(s)	747
BspQI	GCTCTTC	1 cut(s)	618
BspT107I	GGYRCC	2 cut(s)	652, 775
BspTNI	GGTCTC	3 cut(s)	353, 413, 796
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	4 cut(s)	28, 160, 446, 687
BssECI	CCNNGG	4 cut(s)	163, 468, 729, 822
BssMI	GATC	2 cut(s)	429, 739
BssT1I	CCWWGG	1 cut(s)	729
Bst2UI	CCWGG	5 cut(s)	32, 77, 164, 469, 489
Bst4CI	ACNGT	6 cut(s)	40, 410, 523, 559, 602, 724
Bst6I	CTCTTC	1 cut(s)	618
BstC8I	GCNNGC	2 cut(s)	6, 71
BstDSI	CCRYGG	1 cut(s)	822
BstEII	GGTNACC	2 cut(s)	26, 158
BstF5I	GGATG	3 cut(s)	646, 706, 739
BstH2I	RGCGCY	1 cut(s)	76
BstHHI	GCGC	2 cut(s)	10, 75
BstKTI	GATC	2 cut(s)	432, 742
BstMAI	GTCTC	4 cut(s)	14, 353, 413, 796
BstMBI	GATC	2 cut(s)	429, 739
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstNI	CCWGG	5 cut(s)	32, 77, 164, 469, 489
BstNSI	RCATGY	1 cut(s)	626
BstPI	GGTNACC	2 cut(s)	26, 158
BstSCI	CCNGG	6 cut(s)	30, 75, 162, 467, 487, 806
BstSLI	GKGCMC	1 cut(s)	655
BstV1I	GCAGC	1 cut(s)	747
BsuRI	GGCC	4 cut(s)	80, 131, 728, 821
BtgI	CCRYGG	1 cut(s)	822
BtsCI	GGATG	3 cut(s)	646, 706, 739
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	5 cut(s)	36, 393, 519, 555, 694
BveI	ACCTGC	1 cut(s)	169
Cac8I	GCNNGC	2 cut(s)	6, 71
CaiI	CAGNNNCTG	2 cut(s)	488, 532
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	2 cut(s)	10, 75
Cfr13I	GGNCC	1 cut(s)	167
CviAII	CATG	6 cut(s)	55, 287, 338, 623, 764, 795
DpnI	GATC	2 cut(s)	431, 741
DpnII	GATC	2 cut(s)	429, 739
DraIII	CACNNNGTG	1 cut(s)	49
DrdI	GACNNNNNNGTC	1 cut(s)	239
DseDI	GACNNNNNNGTC	1 cut(s)	239
EaeI	YGGCCR	3 cut(s)	78, 726, 819
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
Ecl136II	GAGCTC	1 cut(s)	926
Eco130I	CCWWGG	1 cut(s)	729
Eco24I	GRGCYC	4 cut(s)	193, 334, 475, 928
Eco31I	GGTCTC	3 cut(s)	353, 413, 796
Eco47I	GGWCC	1 cut(s)	167
Eco53kI	GAGCTC	1 cut(s)	926
Eco91I	GGTNACC	2 cut(s)	26, 158
EcoICRI	GAGCTC	1 cut(s)	926
EcoO109I	RGGNCCY	1 cut(s)	167
EcoO65I	GGTNACC	2 cut(s)	26, 158
EcoRII	CCWGG	5 cut(s)	30, 75, 162, 467, 487
EcoT14I	CCWWGG	1 cut(s)	729
EcoT22I	ATGCAT	1 cut(s)	624
EcoT38I	GRGCYC	4 cut(s)	193, 334, 475, 928
ErhI	CCWWGG	1 cut(s)	729
FaeI	CATG	6 cut(s)	58, 290, 341, 626, 767, 798
FaiI	YATR	9 cut(s)	56, 231, 288, 339, 624, 765, 796, 815, 903
FaqI	GGGAC	2 cut(s)	180, 678
FatI	CATG	6 cut(s)	54, 286, 337, 622, 763, 794
Fnu4HI	GCNGC	1 cut(s)	761
FokI	GGATG	3 cut(s)	653, 713, 746
FriOI	GRGCYC	4 cut(s)	193, 334, 475, 928
Fsp4HI	GCNGC	1 cut(s)	761
FspI	TGCGCA	1 cut(s)	9
GlaI	GCGC	2 cut(s)	9, 74
GluI	GCNGC	1 cut(s)	761
HaeII	RGCGCY	1 cut(s)	76
HaeIII	GGCC	4 cut(s)	80, 131, 728, 821
HapII	CCGG	1 cut(s)	807
HhaI	GCGC	2 cut(s)	10, 75
Hin1II	CATG	6 cut(s)	58, 290, 341, 626, 767, 798
Hin6I	GCGC	2 cut(s)	8, 73
HinP1I	GCGC	2 cut(s)	8, 73
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	572
HpaII	CCGG	1 cut(s)	807
HphI	GGTGA	4 cut(s)	20, 152, 185, 434
Hpy166II	GTNNAC	3 cut(s)	43, 276, 316
Hpy188I	TCNGA	4 cut(s)	94, 267, 373, 528
Hpy188III	TCNNGA	4 cut(s)	338, 568, 718, 911
Hpy8I	GTNNAC	3 cut(s)	43, 276, 316
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	5 cut(s)	7, 247, 251, 743, 850
HpyCH4III	ACNGT	6 cut(s)	40, 410, 523, 559, 602, 724
HpyCH4V	TGCA	3 cut(s)	622, 692, 763
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
Hsp92II	CATG	6 cut(s)	58, 290, 341, 626, 767, 798
HspAI	GCGC	2 cut(s)	8, 73
Kzo9I	GATC	2 cut(s)	429, 739
LguI	GCTCTTC	1 cut(s)	618
LmnI	GCTCC	3 cut(s)	337, 478, 490
Lsp1109I	GCAGC	1 cut(s)	747
LweI	GCATC	1 cut(s)	701
MaeIII	GTNAC	5 cut(s)	26, 158, 454, 798, 844
MalI	GATC	2 cut(s)	431, 741
MboI	GATC	2 cut(s)	429, 739
MboII	GAAGA	3 cut(s)	360, 605, 872
MhlI	GDGCHC	6 cut(s)	193, 334, 475, 496, 655, 928
MlsI	TGGCCA	2 cut(s)	80, 728
MluCI	AATT	2 cut(s)	200, 933
MluNI	TGGCCA	2 cut(s)	80, 728
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	4 cut(s)	142, 345, 487, 780
Mox20I	TGGCCA	2 cut(s)	80, 728
Mph1103I	ATGCAT	1 cut(s)	624
MscI	TGGCCA	2 cut(s)	80, 728
MseI	TTAA	1 cut(s)	105
Msp20I	TGGCCA	2 cut(s)	80, 728
MspI	CCGG	1 cut(s)	807
MspR9I	CCNGG	6 cut(s)	32, 77, 164, 469, 489, 808
MvaI	CCWGG	5 cut(s)	32, 77, 164, 469, 489
MwoI	GCNNNNNNNGC	1 cut(s)	491
NciI	CCSGG	1 cut(s)	808
NdeII	GATC	2 cut(s)	429, 739
NlaIII	CATG	6 cut(s)	58, 290, 341, 626, 767, 798
NlaIV	GGNNCC	5 cut(s)	168, 333, 474, 654, 777
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	4 cut(s)	26, 158, 798, 844
NsbI	TGCGCA	1 cut(s)	9
NsiI	ATGCAT	1 cut(s)	624
NspI	RCATGY	1 cut(s)	626
PagI	TCATGA	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	618
PflFI	GACNNNGTC	1 cut(s)	38
PflMI	CCANNNNNTGG	2 cut(s)	49, 327
PkrI	GCNGC	1 cut(s)	762
PpuMI	RGGWCCY	1 cut(s)	167
Psp124BI	GAGCTC	1 cut(s)	928
Psp5II	RGGWCCY	1 cut(s)	167
Psp6I	CCWGG	5 cut(s)	30, 75, 162, 467, 487
PspEI	GGTNACC	2 cut(s)	26, 158
PspGI	CCWGG	5 cut(s)	30, 75, 162, 467, 487
PspN4I	GGNNCC	5 cut(s)	168, 333, 474, 654, 777
PspPI	GGNCC	1 cut(s)	167
PspPPI	RGGWCCY	1 cut(s)	167
PstNI	CAGNNNCTG	2 cut(s)	488, 532
PsyI	GACNNNGTC	1 cut(s)	38
SacI	GAGCTC	1 cut(s)	928
SapI	GCTCTTC	1 cut(s)	618
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	1 cut(s)	761
Sau3AI	GATC	2 cut(s)	429, 739
Sau96I	GGNCC	1 cut(s)	167
ScrFI	CCNGG	6 cut(s)	32, 77, 164, 469, 489, 808
SduI	GDGCHC	6 cut(s)	193, 334, 475, 496, 655, 928
SfaNI	GCATC	1 cut(s)	701
SinI	GGWCC	1 cut(s)	167
Sse9I	AATT	2 cut(s)	200, 933
SsiI	CCGC	1 cut(s)	896
SstI	GAGCTC	1 cut(s)	928
StyD4I	CCNGG	6 cut(s)	30, 75, 162, 467, 487, 806
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	6 cut(s)	40, 410, 523, 559, 602, 724
TaqI	TCGA	1 cut(s)	432
TaqII	GACCGA	1 cut(s)	335
TasI	AATT	2 cut(s)	200, 933
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	5 cut(s)	43, 400, 526, 562, 694
TseFI	GTSAC	4 cut(s)	26, 158, 798, 844
TseI	GCWGC	1 cut(s)	760
Tsp45I	GTSAC	4 cut(s)	26, 158, 798, 844
TspDTI	ATGAA	1 cut(s)	354
TspRI	CASTG	5 cut(s)	43, 400, 526, 562, 694
Tth111I	GACNNNGTC	1 cut(s)	38
Van91I	CCANNNNNTGG	2 cut(s)	49, 327
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	1 cut(s)	626
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
Zsp2I	ATGCAT	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.