Rmu_sc0003244.1_g000028

Belongs to the WD repeat SEC13 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003244.1
Physical Location & Seq
Forward (+)
98325 .. 100816
2492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003244.1_g000028.1.cds

Sequence Viewer

Length: 1032 bp
atgatggttttttgctcggcgtcgtcttcggcatgtcgtccaccacccacgtaccttcgcactcgactttgtaacccaggaagtggagaaatgcctgcgcagaaggttgagactggtcaccaggacactgtccacgatgtggtcatggattactacggcaagcgcctggccacagcttcgtcggacaacaccattaagatagtgggagtgagcaactcggcctcgcaacatcttgcgaccctgactggtcaccagggacctgtttggcaggttgcttgggctcacccgaaattcgggtctttacttgcttcttgttcttatgacgggcgtgtcattctgtggaaggaaggcaatcagaacgagtggacacaagcccatgtttttgatgaccacaaatcgtctgtcaactccattgcttgggctcctcatgaactcggtctctgtttggcttgtggttcttccgatgggaatatctcggttttcactgctaaagcagacggtggttgggagaccacaaagatcgaccaagctcacccagttggtgtaacatctgtttcctgggctccctcaacagctcctggtgctcttgttggctctggtctgcttgacactgttcagaagctgtgttctggtggttgtgataacactgtaaaggtctggaagcttactaatggtgtttggaaaatggactgttttccagctcttcaaatgcatgttgattgggttagggatgttgcttgggcacctaacttgggactaccaaaatctactattgccagtgcatcacaggatgggaaagttattatctggactgtggccaaggatggggatcaatgggaaggtaaggtgctgcatgatttcaaggcacctgtttggagggtctcatggtcacttaccgggaacatattggccgtggctgatgggaacaacagcgtgacattgtggaaggaagaagttgatggggagtggcaacagatacctaatgcggaatatggacttcaagaacagccgagagctcatctaatttattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0002376 GO:0002474 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0005829 GO:0006810 GO:0006886 GO:0006888 GO:0006900 GO:0006901 GO:0006903 GO:0006996 GO:0008104 GO:0008150 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019882 GO:0019884 GO:0019886 GO:0022607 GO:0023051 GO:0023056 GO:0030117 GO:0030120 GO:0030127 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031080 GO:0031090 GO:0031410 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031982 GO:0031984 GO:0032006 GO:0032008 GO:0032991 GO:0033036 GO:0034613 GO:0034622 GO:0035459 GO:0035859 GO:0042175 GO:0042802 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048002 GO:0048193 GO:0048194 GO:0048199 GO:0048207 GO:0048208 GO:0048475 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051668 GO:0061024 GO:0061700 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090110 GO:0090114 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:0098852 GO:1902531 GO:1902533
Pfam Domains
Protein Families

Protein Analysis

343

Amino Acids

37.24

Weight (kDa)

5.92

Isoelectric Point (pI)

29.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 329
Acc16I TGCGCA 1 cut(s) 99
Acc36I ACCTGC 1 cut(s) 259
AccB1I GGYRCC 2 cut(s) 742, 865
AccB7I CCANNNNNTGG 3 cut(s) 83, 139, 417
AciI CCGC 1 cut(s) 986
AclWI GGATC 1 cut(s) 837
AcoI YGGCCR 3 cut(s) 168, 816, 909
AcsI RAATTY 1 cut(s) 290
AcyI GRCGYC 1 cut(s) 20
AdeI CACNNNGTG 1 cut(s) 139
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 6 cut(s) 83, 139, 293, 417, 752, 825
AgsI TTSAA 3 cut(s) 707, 862, 1001
AjnI CCWGG 6 cut(s) 76, 120, 165, 252, 557, 577
AluBI AGCT 7 cut(s) 176, 530, 575, 622, 664, 701, 1016
AluI AGCT 7 cut(s) 176, 530, 575, 622, 664, 701, 1016
Alw21I GWGCWC 2 cut(s) 586, 1018
Alw26I GTCTC 4 cut(s) 104, 443, 503, 886
AlwI GGATC 1 cut(s) 837
AlwNI CAGNNNCTG 2 cut(s) 578, 622
AoxI GGCC 4 cut(s) 168, 219, 816, 909
ApeKI GCWGC 1 cut(s) 850
ApoI RAATTY 1 cut(s) 290
ArsI GACNNNNNNTTYG 4 cut(s) 281, 313, 387, 419
AspLEI GCGC 2 cut(s) 100, 165
AspS9I GGNCC 1 cut(s) 257
AsuC2I CCSGG 1 cut(s) 898
AsuHPI GGTGA 4 cut(s) 110, 242, 275, 524
AvaII GGWCC 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 745
BaeI ACNNNNGTAYC 2 cut(s) 35, 68
BalI TGGCCA 2 cut(s) 170, 818
BanI GGYRCC 2 cut(s) 742, 865
BanII GRGCYC 4 cut(s) 283, 424, 565, 1018
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 586, 1018
BbvI GCAGC 1 cut(s) 837
BccI CCATC 5 cut(s) 458, 785, 818, 914, 953
BceAI ACGGC 2 cut(s) 172, 896
BciT130I CCWGG 6 cut(s) 78, 122, 167, 254, 559, 579
BcnI CCSGG 1 cut(s) 898
BcoDI GTCTC 4 cut(s) 104, 443, 503, 886
BfoI RGCGCY 1 cut(s) 166
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 1 cut(s) 851
BlsI GCNGC 1 cut(s) 852
Bme1390I CCNGG 7 cut(s) 78, 122, 167, 254, 559, 579, 898
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 5 cut(s) 258, 423, 564, 744, 867
BmrFI CCNGG 7 cut(s) 78, 122, 167, 254, 559, 579, 898
BmrI ACTGGG 1 cut(s) 530
BmsI GCATC 1 cut(s) 791
BmuI ACTGGG 1 cut(s) 530
BpiI GAAGAC 1 cut(s) 18
BpuMI CCSGG 1 cut(s) 898
BsaAI YACGTR 1 cut(s) 51
BsaBI GATNNNNATC 1 cut(s) 828
BsaHI GRCGYC 1 cut(s) 20
BsaI GGTCTC 3 cut(s) 443, 503, 886
BsaJI CCNNGG 5 cut(s) 76, 253, 558, 819, 912
Bsc4I CCNNNNNNNGG 6 cut(s) 83, 139, 293, 417, 752, 825
Bse1I ACTGG 4 cut(s) 118, 250, 536, 777
Bse3DI GCAATG 1 cut(s) 411
Bse8I GATNNNNATC 1 cut(s) 828
BseBI CCWGG 6 cut(s) 78, 122, 167, 254, 559, 579
BseDI CCNNGG 5 cut(s) 76, 253, 558, 819, 912
BseGI GGATG 3 cut(s) 736, 796, 829
BseJI GATNNNNATC 1 cut(s) 828
BseLI CCNNNNNNNGG 6 cut(s) 83, 139, 293, 417, 752, 825
BseMI GCAATG 1 cut(s) 411
BseNI ACTGG 4 cut(s) 118, 250, 536, 777
BseRI GAGGAG 1 cut(s) 414
BseSI GKGCMC 1 cut(s) 745
BseXI GCAGC 1 cut(s) 837
BshFI GGCC 4 cut(s) 170, 221, 818, 911
BshNI GGYRCC 2 cut(s) 742, 865
BsiHKAI GWGCWC 2 cut(s) 586, 1018
BsiSI CCGG 1 cut(s) 897
BslFI GGGAC 2 cut(s) 270, 768
BslI CCNNNNNNNGG 6 cut(s) 83, 139, 293, 417, 752, 825
BsmAI GTCTC 4 cut(s) 104, 443, 503, 886
BsmFI GGGAC 2 cut(s) 270, 768
BsnI GGCC 4 cut(s) 170, 221, 818, 911
Bso31I GGTCTC 3 cut(s) 443, 503, 886
Bsp1286I GDGCHC 6 cut(s) 283, 424, 565, 586, 745, 1018
Bsp143I GATC 2 cut(s) 519, 829
BspACI CCGC 1 cut(s) 986
BspANI GGCC 4 cut(s) 170, 221, 818, 911
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 5 cut(s) 258, 423, 564, 744, 867
BspMI ACCTGC 1 cut(s) 259
BspPI GGATC 1 cut(s) 837
BspQI GCTCTTC 1 cut(s) 708
BspT107I GGYRCC 2 cut(s) 742, 865
BspTNI GGTCTC 3 cut(s) 443, 503, 886
BsrDI GCAATG 1 cut(s) 411
BsrI ACTGG 4 cut(s) 118, 250, 536, 777
BssECI CCNNGG 5 cut(s) 76, 253, 558, 819, 912
BssMI GATC 2 cut(s) 519, 829
BssNI GRCGYC 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 819
Bst2UI CCWGG 6 cut(s) 78, 122, 167, 254, 559, 579
Bst4CI ACNGT 6 cut(s) 130, 500, 613, 649, 692, 814
Bst6I CTCTTC 1 cut(s) 708
BstACI GRCGYC 1 cut(s) 20
BstBAI YACGTR 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 96, 161
BstDSI CCRYGG 1 cut(s) 912
BstEII GGTNACC 2 cut(s) 116, 248
BstF5I GGATG 3 cut(s) 736, 796, 829
BstH2I RGCGCY 1 cut(s) 166
BstHHI GCGC 2 cut(s) 100, 165
BstKTI GATC 2 cut(s) 522, 832
BstMAI GTCTC 4 cut(s) 104, 443, 503, 886
BstMBI GATC 2 cut(s) 519, 829
BstMWI GCNNNNNNNGC 1 cut(s) 581
BstNI CCWGG 6 cut(s) 78, 122, 167, 254, 559, 579
BstNSI RCATGY 2 cut(s) 36, 716
BstPI GGTNACC 2 cut(s) 116, 248
BstSCI CCNGG 7 cut(s) 76, 120, 165, 252, 557, 577, 896
BstSLI GKGCMC 1 cut(s) 745
BstV1I GCAGC 1 cut(s) 837
BstV2I GAAGAC 1 cut(s) 18
BsuRI GGCC 4 cut(s) 170, 221, 818, 911
BtgI CCRYGG 1 cut(s) 912
BtsCI GGATG 3 cut(s) 736, 796, 829
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 5 cut(s) 126, 483, 609, 645, 784
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 2 cut(s) 96, 161
CaiI CAGNNNCTG 2 cut(s) 578, 622
CciI TCATGA 1 cut(s) 427
CfoI GCGC 2 cut(s) 100, 165
Cfr13I GGNCC 1 cut(s) 257
CseI GACGC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 52
CviAII CATG 7 cut(s) 33, 145, 377, 428, 713, 854, 885
CviQI GTAC 1 cut(s) 52
DpnI GATC 2 cut(s) 521, 831
DpnII GATC 2 cut(s) 519, 829
DraIII CACNNNGTG 1 cut(s) 139
DrdI GACNNNNNNGTC 1 cut(s) 329
DseDI GACNNNNNNGTC 1 cut(s) 329
EaeI YGGCCR 3 cut(s) 168, 816, 909
Eam1104I CTCTTC 1 cut(s) 708
EarI CTCTTC 1 cut(s) 708
Ecl136II GAGCTC 1 cut(s) 1016
Eco130I CCWWGG 1 cut(s) 819
Eco24I GRGCYC 4 cut(s) 283, 424, 565, 1018
Eco31I GGTCTC 3 cut(s) 443, 503, 886
Eco47I GGWCC 1 cut(s) 257
Eco53kI GAGCTC 1 cut(s) 1016
Eco91I GGTNACC 2 cut(s) 116, 248
EcoICRI GAGCTC 1 cut(s) 1016
EcoO109I RGGNCCY 1 cut(s) 257
EcoO65I GGTNACC 2 cut(s) 116, 248
EcoRII CCWGG 6 cut(s) 76, 120, 165, 252, 557, 577
EcoT14I CCWWGG 1 cut(s) 819
EcoT22I ATGCAT 1 cut(s) 714
EcoT38I GRGCYC 4 cut(s) 283, 424, 565, 1018
ErhI CCWWGG 1 cut(s) 819
FaeI CATG 7 cut(s) 36, 148, 380, 431, 716, 857, 888
FaqI GGGAC 2 cut(s) 270, 768
FatI CATG 7 cut(s) 32, 144, 376, 427, 712, 853, 884
Fnu4HI GCNGC 1 cut(s) 851
FokI GGATG 3 cut(s) 743, 803, 836
FriOI GRGCYC 4 cut(s) 283, 424, 565, 1018
Fsp4HI GCNGC 1 cut(s) 851
FspI TGCGCA 1 cut(s) 99
GlaI GCGC 2 cut(s) 99, 164
GluI GCNGC 1 cut(s) 851
HaeII RGCGCY 1 cut(s) 166
HaeIII GGCC 4 cut(s) 170, 221, 818, 911
HapII CCGG 1 cut(s) 897
HgaI GACGC 1 cut(s) 9
HhaI GCGC 2 cut(s) 100, 165
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 7 cut(s) 36, 148, 380, 431, 716, 857, 888
Hin6I GCGC 2 cut(s) 98, 163
HinP1I GCGC 2 cut(s) 98, 163
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 662
HpaII CCGG 1 cut(s) 897
HphI GGTGA 4 cut(s) 110, 242, 275, 524
Hpy166II GTNNAC 4 cut(s) 41, 133, 366, 406
Hpy188I TCNGA 4 cut(s) 184, 357, 463, 618
Hpy188III TCNNGA 4 cut(s) 428, 658, 808, 1001
Hpy8I GTNNAC 4 cut(s) 41, 133, 366, 406
Hpy99I CGWCG 2 cut(s) 25, 184
HpyAV CCTTC 6 cut(s) 65, 97, 337, 341, 833, 940
HpyCH4III ACNGT 6 cut(s) 130, 500, 613, 649, 692, 814
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 3 cut(s) 712, 782, 853
HpyF10VI GCNNNNNNNGC 1 cut(s) 581
HpySE526I ACGT 1 cut(s) 50
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 7 cut(s) 36, 148, 380, 431, 716, 857, 888
HspAI GCGC 2 cut(s) 98, 163
Kzo9I GATC 2 cut(s) 519, 829
LguI GCTCTTC 1 cut(s) 708
LmnI GCTCC 3 cut(s) 427, 568, 580
Lsp1109I GCAGC 1 cut(s) 837
LweI GCATC 1 cut(s) 791
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 6 cut(s) 71, 116, 248, 544, 888, 934
MalI GATC 2 cut(s) 521, 831
MboI GATC 2 cut(s) 519, 829
MboII GAAGA 4 cut(s) 18, 450, 695, 962
MhlI GDGCHC 6 cut(s) 283, 424, 565, 586, 745, 1018
MlsI TGGCCA 2 cut(s) 170, 818
MluCI AATT 2 cut(s) 290, 1023
MluNI TGGCCA 2 cut(s) 170, 818
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 4 cut(s) 232, 435, 577, 870
Mox20I TGGCCA 2 cut(s) 170, 818
Mph1103I ATGCAT 1 cut(s) 714
MscI TGGCCA 2 cut(s) 170, 818
MseI TTAA 1 cut(s) 195
Msp20I TGGCCA 2 cut(s) 170, 818
MspI CCGG 1 cut(s) 897
MspR9I CCNGG 7 cut(s) 78, 122, 167, 254, 559, 579, 898
MvaI CCWGG 6 cut(s) 78, 122, 167, 254, 559, 579
MwoI GCNNNNNNNGC 1 cut(s) 581
NciI CCSGG 1 cut(s) 898
NdeII GATC 2 cut(s) 519, 829
NlaIII CATG 7 cut(s) 36, 148, 380, 431, 716, 857, 888
NlaIV GGNNCC 5 cut(s) 258, 423, 564, 744, 867
NmeAIII GCCGAG 1 cut(s) 197
NmuCI GTSAC 4 cut(s) 116, 248, 888, 934
NsbI TGCGCA 1 cut(s) 99
NsiI ATGCAT 1 cut(s) 714
NspI RCATGY 2 cut(s) 36, 716
PagI TCATGA 1 cut(s) 427
PciSI GCTCTTC 1 cut(s) 708
PflFI GACNNNGTC 1 cut(s) 128
PflMI CCANNNNNTGG 3 cut(s) 83, 139, 417
PkrI GCNGC 1 cut(s) 852
Ppu21I YACGTR 1 cut(s) 51
PpuMI RGGWCCY 1 cut(s) 257
Psp124BI GAGCTC 1 cut(s) 1018
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 6 cut(s) 76, 120, 165, 252, 557, 577
PspEI GGTNACC 2 cut(s) 116, 248
PspGI CCWGG 6 cut(s) 76, 120, 165, 252, 557, 577
PspN4I GGNNCC 5 cut(s) 258, 423, 564, 744, 867
PspPI GGNCC 1 cut(s) 257
PspPPI RGGWCCY 1 cut(s) 257
PstNI CAGNNNCTG 2 cut(s) 578, 622
PsyI GACNNNGTC 1 cut(s) 128
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SacI GAGCTC 1 cut(s) 1018
SapI GCTCTTC 1 cut(s) 708
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 1 cut(s) 851
Sau3AI GATC 2 cut(s) 519, 829
Sau96I GGNCC 1 cut(s) 257
ScrFI CCNGG 7 cut(s) 78, 122, 167, 254, 559, 579, 898
SduI GDGCHC 6 cut(s) 283, 424, 565, 586, 745, 1018
SfaNI GCATC 1 cut(s) 791
SinI GGWCC 1 cut(s) 257
Sse9I AATT 2 cut(s) 290, 1023
SsiI CCGC 1 cut(s) 986
SstI GAGCTC 1 cut(s) 1018
StyD4I CCNGG 7 cut(s) 76, 120, 165, 252, 557, 577, 896
StyI CCWWGG 1 cut(s) 819
TaaI ACNGT 6 cut(s) 130, 500, 613, 649, 692, 814
TaiI ACGT 1 cut(s) 53
TaqI TCGA 2 cut(s) 64, 522
TaqII GACCGA 1 cut(s) 425
TasI AATT 2 cut(s) 290, 1023
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 5 cut(s) 133, 490, 616, 652, 784
TseFI GTSAC 4 cut(s) 116, 248, 888, 934
TseI GCWGC 1 cut(s) 850
Tsp45I GTSAC 4 cut(s) 116, 248, 888, 934
TspDTI ATGAA 1 cut(s) 444
TspRI CASTG 5 cut(s) 133, 490, 616, 652, 784
Tth111I GACNNNGTC 1 cut(s) 128
Van91I CCANNNNNTGG 3 cut(s) 83, 139, 417
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 1 cut(s) 290
XceI RCATGY 2 cut(s) 36, 716
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
Zsp2I ATGCAT 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.