AT2G30620

nucleosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003009
Physical Location & Seq
Forward (+)
13044931 .. 13046682
1752 bp
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UTR
Exon/CDS
Intron
AT2G30620.2

Sequence Viewer

Length: 822 bp
ATGTCTATAGAGGAAGAAAACGTTCCAACGACTGTTGACTCAGGAGCTGCCGATACAACGGTGAAATCTCCGGAGAAGAAACCGGCGGCGAAAGGTGGTAAATCTAAGAAGACGACGACGGCTAAAGCAACGAAGAAGCCTGTGAAAGCTGCTGCTCCAACGAAGAAGAAAACAACTTCCTCTCACCCTACCTATGAAGAGATGATTAAAGATGCGATTGTAACGTTGAAGGAGAGAACTGGATCTAGTCAATACGCGATTCAGAAATTCATAGAGGAGAAACATAAATCACTGCCTCCTACTTTTAGGAAGCTTTTGCTTGTGAATCTCAAGAGACTTGTTGCTTCTGAGAAATTGGTTAAAGTCAAAGCTTCTTTTAAGATTCCTTCTGCTAGATCCGCAGCAACACCTAAACCGGCTGCTCCGGTTAAGAAGAAGGCAACTGTAGTAGCTAAACCTAAGGGTAAGGTTGCTGCTGCTGTTGCTCCTGCTAAAGCTAAAGCGGCGGCTAAAGGAACTAAGAAGCCTGCGGCTAAAGTTGTTGCTAAGGCTAAGGTTACTGCTAAACCTAAGGCTAAGGTTACTGCTGCTAAACCTAAGTCTAAGTCTGTTGCTGCTGTTTCCAAGACTAAAGCTGTTGCTGCTAAGCCTAAGGCTAAGGAGAGACCAGCTAAAGCTTCTAGGACTTCGACTAGAACATCTCCAGGGAAAAAAGTTGCTGCTCCTGCTAAGAAAGTGGCTGTGACTAAGAAGGCTCCGGCTAAGAGTGTGAAGGTGAAGTCTCCGGCGAAGAGAGCTTCGACTAGGAAGGCTAAGAAGTGA

Protein Analysis

273

Amino Acids

28.49

Weight (kDa)

10.83

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 62 - 127 1.7e-19 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 257
AccIII TCCGGA 1 cut(s) 70
AciI CCGC 5 cut(s) 86, 399, 503, 506, 530
AclI AACGTT 2 cut(s) 21, 224
AclWI GGATC 2 cut(s) 250, 390
AcsI RAATTY 1 cut(s) 266
AgsI TTSAA 1 cut(s) 229
AjnI CCWGG 1 cut(s) 703
Alw26I GTCTC 3 cut(s) 328, 658, 786
AlwI GGATC 2 cut(s) 250, 390
AlwNI CAGNNNCTG 1 cut(s) 47
Aor13HI TCCGGA 1 cut(s) 70
ApoI RAATTY 1 cut(s) 266
Asp700I GAANNNNTTC 1 cut(s) 21
AsuHPI GGTGA 3 cut(s) 73, 176, 787
AxyI CCTNAGG 3 cut(s) 459, 570, 651
BaeI ACNNNNGTAYC 2 cut(s) 45, 78
BbsI GAAGAC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 1 cut(s) 705
BcoDI GTCTC 3 cut(s) 328, 658, 786
BfaI CTAG 5 cut(s) 246, 393, 681, 693, 804
BfmI CTRYAG 2 cut(s) 6, 444
BlpI GCTNAGC 1 cut(s) 645
Bme1390I CCNGG 1 cut(s) 705
BmiI GGNNCC 1 cut(s) 756
BmrFI CCNGG 1 cut(s) 705
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 116
BpmI CTGGAG 1 cut(s) 687
Bpu10I CCTNAGC 4 cut(s) 546, 552, 576, 657
Bpu1102I GCTNAGC 1 cut(s) 645
BpuEI CTTGAG 1 cut(s) 314
BsaI GGTCTC 1 cut(s) 658
BsaJI CCNNGG 1 cut(s) 704
BsaWI WCCGGW 2 cut(s) 70, 424
Bse118I RCCGGY 2 cut(s) 82, 415
Bse1I ACTGG 1 cut(s) 244
Bse21I CCTNAGG 3 cut(s) 459, 570, 651
BseAI TCCGGA 1 cut(s) 70
BseBI CCWGG 1 cut(s) 705
BseDI CCNNGG 1 cut(s) 704
BseMII CTCAG 2 cut(s) 54, 339
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 290
Bsh1236I CGCG 1 cut(s) 257
BsiSI CCGG 6 cut(s) 71, 83, 416, 425, 758, 785
BsmAI GTCTC 3 cut(s) 328, 658, 786
Bso31I GGTCTC 1 cut(s) 658
Bsp13I TCCGGA 1 cut(s) 70
Bsp143I GATC 2 cut(s) 242, 395
Bsp1720I GCTNAGC 1 cut(s) 645
BspACI CCGC 5 cut(s) 86, 399, 503, 506, 530
BspCNI CTCAG 2 cut(s) 53, 340
BspEI TCCGGA 1 cut(s) 70
BspFNI CGCG 1 cut(s) 257
BspLI GGNNCC 1 cut(s) 756
BspPI GGATC 2 cut(s) 250, 390
BspTNI GGTCTC 1 cut(s) 658
BsrFI RCCGGY 2 cut(s) 82, 415
BsrI ACTGG 1 cut(s) 244
BssAI RCCGGY 2 cut(s) 82, 415
BssECI CCNNGG 1 cut(s) 704
BssMI GATC 2 cut(s) 242, 395
Bst2UI CCWGG 1 cut(s) 705
Bst4CI ACNGT 3 cut(s) 34, 61, 445
Bst6I CTCTTC 2 cut(s) 192, 785
BstC8I GCNNGC 1 cut(s) 528
BstFNI CGCG 1 cut(s) 257
BstKTI GATC 2 cut(s) 245, 398
BstMAI GTCTC 3 cut(s) 328, 658, 786
BstMBI GATC 2 cut(s) 242, 395
BstMWI GCNNNNNNNGC 6 cut(s) 398, 482, 503, 641, 725, 794
BstNI CCWGG 1 cut(s) 705
BstSCI CCNGG 1 cut(s) 703
BstSFI CTRYAG 2 cut(s) 6, 444
BstUI CGCG 1 cut(s) 257
BstV2I GAAGAC 1 cut(s) 116
BstX2I RGATCY 2 cut(s) 242, 395
BstYI RGATCY 2 cut(s) 242, 395
Bsu36I CCTNAGG 3 cut(s) 459, 570, 651
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 290
Cac8I GCNNGC 1 cut(s) 528
CaiI CAGNNNCTG 1 cut(s) 47
Cfr10I RCCGGY 2 cut(s) 82, 415
DpnI GATC 2 cut(s) 244, 397
DpnII GATC 2 cut(s) 242, 395
Eam1104I CTCTTC 2 cut(s) 192, 785
EarI CTCTTC 2 cut(s) 192, 785
Eco31I GGTCTC 1 cut(s) 658
Eco81I CCTNAGG 3 cut(s) 459, 570, 651
EcoRII CCWGG 1 cut(s) 703
FaiI YATR 4 cut(s) 8, 195, 272, 285
FspBI CTAG 5 cut(s) 246, 393, 681, 693, 804
GsuI CTGGAG 1 cut(s) 687
HapII CCGG 6 cut(s) 71, 83, 416, 425, 758, 785
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HindIII AAGCTT 3 cut(s) 311, 369, 675
HinfI GANTC 4 cut(s) 38, 259, 325, 382
HpaII CCGG 6 cut(s) 71, 83, 416, 425, 758, 785
HphI GGTGA 3 cut(s) 73, 176, 787
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 2 cut(s) 264, 349
Hpy188III TCNNGA 3 cut(s) 42, 71, 331
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 2 cut(s) 118, 121
HpyAV CCTTC 6 cut(s) 223, 396, 430, 745, 766, 802
HpyCH4III ACNGT 3 cut(s) 34, 61, 445
HpyCH4IV ACGT 2 cut(s) 21, 224
HpyF10VI GCNNNNNNNGC 6 cut(s) 398, 482, 503, 641, 725, 794
HpySE526I ACGT 2 cut(s) 21, 224
Kpn2I TCCGGA 1 cut(s) 70
Kzo9I GATC 2 cut(s) 242, 395
LmnI GCTCC 6 cut(s) 44, 160, 427, 490, 727, 760
LweI GCATC 1 cut(s) 202
MaeI CTAG 5 cut(s) 246, 393, 681, 693, 804
MaeII ACGT 2 cut(s) 21, 224
MaeIII GTNAC 4 cut(s) 220, 556, 580, 742
MalI GATC 2 cut(s) 244, 397
MboI GATC 2 cut(s) 242, 395
MboII GAAGA 9 cut(s) 26, 88, 121, 145, 175, 178, 209, 445, 802
MflI RGATCY 2 cut(s) 242, 395
MluCI AATT 2 cut(s) 266, 353
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 2 cut(s) 50, 182
MnlI CCTC 4 cut(s) 4, 190, 268, 306
MroI TCCGGA 1 cut(s) 70
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 4 cut(s) 207, 360, 378, 429
MspI CCGG 6 cut(s) 71, 83, 416, 425, 758, 785
MspR9I CCNGG 1 cut(s) 705
MvaI CCWGG 1 cut(s) 705
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 6 cut(s) 398, 482, 503, 641, 725, 794
NdeII GATC 2 cut(s) 242, 395
NlaIV GGNNCC 1 cut(s) 756
NmuCI GTSAC 1 cut(s) 742
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 3 cut(s) 259, 325, 382
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
Psp1406I AACGTT 2 cut(s) 21, 224
Psp6I CCWGG 1 cut(s) 703
PspGI CCWGG 1 cut(s) 703
PspN4I GGNNCC 1 cut(s) 756
PstNI CAGNNNCTG 1 cut(s) 47
PsuI RGATCY 2 cut(s) 242, 395
SaqAI TTAA 4 cut(s) 207, 360, 378, 429
Sau3AI GATC 2 cut(s) 242, 395
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 705
SfaNI GCATC 1 cut(s) 202
SfcI CTRYAG 2 cut(s) 6, 444
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 2 cut(s) 266, 353
SsiI CCGC 5 cut(s) 86, 399, 503, 506, 530
SspMI CTAG 5 cut(s) 246, 393, 681, 693, 804
StyD4I CCNGG 1 cut(s) 703
TaaI ACNGT 3 cut(s) 34, 61, 445
TaiI ACGT 2 cut(s) 24, 227
TaqI TCGA 2 cut(s) 689, 800
TasI AATT 2 cut(s) 266, 353
TauI GCSGC 4 cut(s) 89, 506, 509, 533
TfiI GAWTC 3 cut(s) 259, 325, 382
Tru1I TTAA 4 cut(s) 207, 360, 378, 429
Tru9I TTAA 4 cut(s) 207, 360, 378, 429
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 1 cut(s) 742
Tsp45I GTSAC 1 cut(s) 742
TspDTI ATGAA 2 cut(s) 210, 259
TspRI CASTG 1 cut(s) 297
XapI RAATTY 1 cut(s) 266
XmnI GAANNNNTTC 1 cut(s) 21
XspI CTAG 5 cut(s) 246, 393, 681, 693, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.