Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001527.1

Orthogroup ID

OG0003009

Physical Location & Seq

Genomic Coordinates Reverse (-)

64830 .. 65889

Gene Structure 1060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001527.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atggctgaggacgaacagatcgtcgccaccaccgagaccgtcgcccccccgccggccgacgacaagcctgaggccaagtccggcaaggccaccaaggccaaggagcccaaggccaagaagcccgctgctcccaagaaggccaggactgctcccactcatcctccttatgaagagatgatcaaggatgcgattgtgactcttaaggagaggactggttcgagccagtatgcgatcactaagttcatcgaggagaagcacaagcagctccctccaaacttcaagaagcttctgctctaccatttgaagaagctcgtcagctccgacaagctcgccaaggtcaaaagctcctataagattccgtcggttcggtccgccgcagctccacctaagcccgctgctgctccggccaagaagaagcctgccgccgcggccaagcccaaggccaaggctgctgcgaagccaaagggaaagactaagtcggtcaaggcggcgagcaagtctccggccaaggctaaggccgctgctgctaagccgaagccgaagcccaaagccaagcctgcggccaaggcaaagcctgctccggccaagaccaaggcggctgctccggccaaggccaaggctgctccggctaaggcaaaggctgctccggccaagaccaaggctgccccggctgccaagcctaaggcagcagctcccaagcccaagcttaaggagaagccagccaaggctgcgaggacgttgaccaggtcatcgcctgggaggaaggctccgacggctaggtcggccaagccagcgccgaagaaggcagcgacaccgaagaaggcacccacccgtactgtgaagccgagaagcgtcaagtcgccggctaagaaagcaccagctaggaagggaaggaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005739 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

299

Amino Acids

31.04

Weight (kDa)

10.79

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30620 AT2G30620
fragaria_vesca	FvH4_2g02381 FvH4_2g22280 FvH4_6g02630 FvH4_7g09410
malus_domestica	MD01G1078700.v1.1 MD04G1226600.v1.1 MD05G1204100.v1.1 MD10G1191200.v1.1 MD12G1243700.v1.1
prunus_persica	Prupe.6G345300_v2.0.a1 Prupe.8G230400_v2.0.a1
pyrus_communis	pycom04g19980 pycom05g19050 pycom10g16480 pycom12g22270
rosa_chinensis	RchiOBHm_Chr3g0450571 RchiOBHm_Chr6g0289241
rosa_laevigata	RLG00000012318 RLG00000025721
rosa_multiflora	Rmu_co8346219.1_g000001 Rmu_sc0000078.1_g000047 Rmu_sc0001527.1_g000013 Rmu_sc0005951.1_g000008
rosa_roxburghii	Rroxscaffold_6G00428260 Rroxscaffold_7G00179420
rosa_rugosa	Rorug02G0628700 Rorug06G0202300
rosa_samantha	Rh3AG029400 Rh3BG029800 Rh3CG028700 Rh3DG029500 Rh6BG320600 Rh6CG326700 Rh6DG312600
rosa_wichuraiana	Rw3G002260 Rw6G027060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	778
AccB1I	GGYRCC	1 cut(s)	823
AccII	CGCG	1 cut(s)	428
AcoI	YGGCCR	9 cut(s)	54, 405, 429, 504, 561, 582, 606, 648, 783
AfaI	GTAC	1 cut(s)	835
AfiI	CCNNNNNNNGG	1 cut(s)	52
AflII	CTTAAG	2 cut(s)	200, 707
AgsI	TTSAA	2 cut(s)	280, 304
AjnI	CCWGG	3 cut(s)	140, 743, 754
Alw26I	GTCTC	2 cut(s)	29, 504
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	796
AspS9I	GGNCC	1 cut(s)	369
AsuC2I	CCSGG	1 cut(s)	668
AvaII	GGWCC	1 cut(s)	369
AxyI	CCTNAGG	2 cut(s)	69, 681
BanI	GGYRCC	1 cut(s)	823
BanII	GRGCYC	1 cut(s)	108
BbvCI	CCTCAGC	1 cut(s)	6
BceAI	ACGGC	1 cut(s)	789
BciT130I	CCWGG	3 cut(s)	142, 745, 756
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	1 cut(s)	668
BcoDI	GTCTC	2 cut(s)	29, 504
BfaI	CTAG	2 cut(s)	777, 882
BfoI	RGCGCY	1 cut(s)	797
BfrI	CTTAAG	2 cut(s)	200, 707
BglI	GCCNNNNNGGC	2 cut(s)	95, 428
BlpI	GCTNAGC	1 cut(s)	528
Bme1390I	CCNGG	4 cut(s)	142, 668, 745, 756
Bme18I	GGWCC	1 cut(s)	369
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	3 cut(s)	105, 768, 825
BmrFI	CCNGG	4 cut(s)	142, 668, 745, 756
BmsI	GCATC	1 cut(s)	175
BplI	GAGNNNNNCTC	4 cut(s)	484, 516, 751, 783
Bpu10I	CCTNAGC	4 cut(s)	6, 387, 513, 630
Bpu1102I	GCTNAGC	1 cut(s)	528
BpuMI	CCSGG	1 cut(s)	668
BsaI	GGTCTC	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse118I	RCCGGY	2 cut(s)	52, 862
Bse1I	ACTGG	2 cut(s)	217, 223
Bse21I	CCTNAGG	2 cut(s)	69, 681
BseBI	CCWGG	3 cut(s)	142, 745, 756
BseGI	GGATG	2 cut(s)	157, 190
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	2 cut(s)	217, 223
BseRI	GAGGAG	1 cut(s)	263
BseX3I	CGGCCG	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	428
Bsh1285I	CGRYCG	1 cut(s)	57
BshNI	GGYRCC	1 cut(s)	823
BsiEI	CGRYCG	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	2 cut(s)	29, 504
Bso31I	GGTCTC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	18, 177, 231
Bsp1720I	GCTNAGC	1 cut(s)	528
BspCNI	CTCAG	1 cut(s)	61
BspFNI	CGCG	1 cut(s)	428
BspLI	GGNNCC	3 cut(s)	105, 768, 825
BspT107I	GGYRCC	1 cut(s)	823
BspTI	CTTAAG	2 cut(s)	200, 707
BspTNI	GGTCTC	1 cut(s)	29
BsrFI	RCCGGY	2 cut(s)	52, 862
BsrI	ACTGG	2 cut(s)	217, 223
BssAI	RCCGGY	2 cut(s)	52, 862
BssMI	GATC	3 cut(s)	18, 177, 231
Bst2UI	CCWGG	3 cut(s)	142, 745, 756
Bst4CI	ACNGT	2 cut(s)	40, 838
Bst6I	CTCTTC	1 cut(s)	165
BstAFI	CTTAAG	2 cut(s)	200, 707
BstAPI	GCANNNNNTGC	2 cut(s)	575, 641
BstDSI	CCRYGG	1 cut(s)	426
BstF5I	GGATG	2 cut(s)	157, 190
BstFNI	CGCG	1 cut(s)	428
BstH2I	RGCGCY	1 cut(s)	797
BstHHI	GCGC	1 cut(s)	796
BstKTI	GATC	3 cut(s)	21, 180, 234
BstMAI	GTCTC	2 cut(s)	29, 504
BstMBI	GATC	3 cut(s)	18, 177, 231
BstMCI	CGRYCG	1 cut(s)	57
BstNI	CCWGG	3 cut(s)	142, 745, 756
BstSCI	CCNGG	4 cut(s)	140, 666, 743, 754
BstUI	CGCG	1 cut(s)	428
BstZI	CGGCCG	1 cut(s)	54
Bsu36I	CCTNAGG	2 cut(s)	69, 681
BtgI	CCRYGG	1 cut(s)	426
BtgZI	GCGATG	1 cut(s)	735
BtsCI	GGATG	2 cut(s)	157, 190
CfoI	GCGC	1 cut(s)	796
Cfr10I	RCCGGY	2 cut(s)	52, 862
Cfr13I	GGNCC	1 cut(s)	369
Cfr42I	CCGCGG	1 cut(s)	429
CpoI	CGGWCCG	1 cut(s)	369
CseI	GACGC	1 cut(s)	841
CsiI	ACCWGGT	1 cut(s)	743
Csp6I	GTAC	1 cut(s)	834
CspI	CGGWCCG	1 cut(s)	369
CviQI	GTAC	1 cut(s)	834
DpnI	GATC	3 cut(s)	20, 179, 233
DpnII	GATC	3 cut(s)	18, 177, 231
DrdI	GACNNNNNNGTC	1 cut(s)	778
DseDI	GACNNNNNNGTC	1 cut(s)	778
EaeI	YGGCCR	9 cut(s)	54, 405, 429, 504, 561, 582, 606, 648, 783
EagI	CGGCCG	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
EciI	GGCGGA	1 cut(s)	361
EclXI	CGGCCG	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	369
Eco52I	CGGCCG	1 cut(s)	54
Eco81I	CCTNAGG	2 cut(s)	69, 681
EcoRII	CCWGG	3 cut(s)	140, 743, 754
EcoT38I	GRGCYC	1 cut(s)	108
FaiI	YATR	3 cut(s)	168, 228, 351
FauI	CCCGC	3 cut(s)	57, 130, 400
FbaI	TGATCA	1 cut(s)	177
FokI	GGATG	2 cut(s)	144, 197
FriOI	GRGCYC	1 cut(s)	108
FspBI	CTAG	2 cut(s)	777, 882
GlaI	GCGC	1 cut(s)	795
HaeII	RGCGCY	1 cut(s)	797
HgaI	GACGC	1 cut(s)	841
HhaI	GCGC	1 cut(s)	796
Hin6I	GCGC	1 cut(s)	794
HinP1I	GCGC	1 cut(s)	794
HincII	GTYRAC	1 cut(s)	741
HindII	GTYRAC	1 cut(s)	741
HindIII	AAGCTT	2 cut(s)	284, 704
HinfI	GANTC	2 cut(s)	196, 355
Hpy166II	GTNNAC	1 cut(s)	741
Hpy188I	TCNGA	2 cut(s)	322, 771
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	1 cut(s)	741
Hpy99I	CGWCG	5 cut(s)	26, 44, 62, 364, 775
HpyAV	CCTTC	6 cut(s)	130, 757, 796, 814, 880, 885
HpyCH4III	ACNGT	2 cut(s)	40, 838
HpyCH4IV	ACGT	1 cut(s)	737
HpySE526I	ACGT	1 cut(s)	737
HspAI	GCGC	1 cut(s)	794
KroI	GCCGGC	2 cut(s)	52, 862
KroNI	GCCGGC	2 cut(s)	54, 864
Ksp22I	TGATCA	1 cut(s)	177
KspI	CCGCGG	1 cut(s)	429
Kzo9I	GATC	3 cut(s)	18, 177, 231
LweI	GCATC	1 cut(s)	175
MabI	ACCWGGT	1 cut(s)	743
MaeI	CTAG	2 cut(s)	777, 882
MaeII	ACGT	1 cut(s)	737
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	3 cut(s)	20, 179, 233
MboI	GATC	3 cut(s)	18, 177, 231
MboII	GAAGA	5 cut(s)	182, 316, 424, 811, 829
MhlI	GDGCHC	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	2 cut(s)	345, 794
MnlI	CCTC	7 cut(s)	64, 171, 201, 241, 279, 726, 753
MroNI	GCCGGC	2 cut(s)	52, 862
MseI	TTAA	2 cut(s)	201, 708
MspA1I	CMGCKG	4 cut(s)	125, 395, 428, 521
MspCI	CTTAAG	2 cut(s)	200, 707
MspR9I	CCNGG	4 cut(s)	142, 668, 745, 756
MvaI	CCWGG	3 cut(s)	142, 745, 756
MvnI	CGCG	1 cut(s)	428
NaeI	GCCGGC	2 cut(s)	54, 864
NciI	CCSGG	1 cut(s)	668
NdeII	GATC	3 cut(s)	18, 177, 231
NgoMIV	GCCGGC	2 cut(s)	52, 862
NlaIV	GGNNCC	3 cut(s)	105, 768, 825
NmeAIII	GCCGAG	1 cut(s)	870
NmuCI	GTSAC	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	3 cut(s)	18, 30, 318
PdiI	GCCGGC	2 cut(s)	54, 864
PfeI	GAWTC	1 cut(s)	355
PflFI	GACNNNGTC	2 cut(s)	475, 745
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Psp6I	CCWGG	3 cut(s)	140, 743, 754
PspGI	CCWGG	3 cut(s)	140, 743, 754
PspN4I	GGNNCC	3 cut(s)	105, 768, 825
PspPI	GGNCC	1 cut(s)	369
PsyI	GACNNNGTC	2 cut(s)	475, 745
RsaI	GTAC	1 cut(s)	835
RsaNI	GTAC	1 cut(s)	834
Rsr2I	CGGWCCG	1 cut(s)	369
RsrII	CGGWCCG	1 cut(s)	369
SacII	CCGCGG	1 cut(s)	429
SaqAI	TTAA	2 cut(s)	201, 708
Sau3AI	GATC	3 cut(s)	18, 177, 231
Sau96I	GGNCC	1 cut(s)	369
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	4 cut(s)	142, 668, 745, 756
SduI	GDGCHC	1 cut(s)	108
SexAI	ACCWGGT	1 cut(s)	743
SfaNI	GCATC	1 cut(s)	175
SfiI	GGCCNNNNNGGCC	1 cut(s)	95
Sfr303I	CCGCGG	1 cut(s)	429
SgrBI	CCGCGG	1 cut(s)	429
SinI	GGWCC	1 cut(s)	369
SmlI	CTYRAG	2 cut(s)	200, 707
SmoI	CTYRAG	2 cut(s)	200, 707
SspMI	CTAG	2 cut(s)	777, 882
StyD4I	CCNGG	4 cut(s)	140, 666, 743, 754
TaaI	ACNGT	2 cut(s)	40, 838
TaiI	ACGT	1 cut(s)	740
TaqI	TCGA	2 cut(s)	218, 246
TaqII	GACCGA	2 cut(s)	357, 469
TauI	GCSGC	8 cut(s)	377, 425, 428, 431, 491, 521, 563, 599
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	2 cut(s)	201, 708
Tru9I	TTAA	2 cut(s)	201, 708
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	183, 232
TspGWI	ACGGA	1 cut(s)	348
Tth111I	GACNNNGTC	2 cut(s)	475, 745
Vha464I	CTTAAG	2 cut(s)	200, 707
VpaK11BI	GGWCC	1 cut(s)	369
XspI	CTAG	2 cut(s)	777, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.