Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003009

Physical Location & Seq

Genomic Coordinates Forward (+)

29637622 .. 29638636

Gene Structure 1015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G345300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGACTGAAACTGACGTCAAGGGCAAGAAGGCAAGATCGCCACCTTCTCACCCTCCTTTTGTCGAGATGATTACGGAGGCGATTGTGGCGCTGAAGGAGAGGACAGGGTCGAGCCAGTACGCGATCACCAAGTTCGTCGAGGAAAAGAACAAGAATTTGCCTCAGACCTTCAGGAAGCTCCTGCTCTACAATTTGAAGAAGCTTGTGGCTTCTGGTAAGCTCGTCAAGGTTAAGAACTCATTCAAGCTCCCTCCTGGTCGCTCGGCTCCGGTGAAAGAAAAGCCAGACGCGCCCAAGCCTAAAAAGTCGGCTGAGGCGGTTGTCAAGCCTAGGCCGAAGCCGAAAACGGTTGCTAAGCCCAAGGCCAATGTCGCGGCTAAGCCTAAGCCCAAAGCGGCTGCAAAGCCTAAGCTTAAGGCAGTGGCTGCTAAACCAAAGGCGGCTGTGAAACCGAAGGCGAAGCCAGCGGCTGCCAAGCCGGCTGCTAAGGTTGCGAGAACATCGACGAGGACGTCGCCGGGAAAGAAGGTGGAGGTGAAGGCGAAGGCGAAGAAGCCGGTGGCTCCGGCCAGGGCTGTGAAGAAGCCAAAGAGCGTGAAATCTCCGGTGAAGAAGAAAGCCCAGGCGAAGAAGGGGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

215

Amino Acids

22.91

Weight (kDa)

10.88

Isoelectric Point (pI)

28.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30620 AT2G30620
fragaria_vesca	FvH4_2g02381 FvH4_2g22280 FvH4_6g02630 FvH4_7g09410
malus_domestica	MD01G1078700.v1.1 MD04G1226600.v1.1 MD05G1204100.v1.1 MD10G1191200.v1.1 MD12G1243700.v1.1
prunus_persica	Prupe.6G345300_v2.0.a1 Prupe.8G230400_v2.0.a1
pyrus_communis	pycom04g19980 pycom05g19050 pycom10g16480 pycom12g22270
rosa_chinensis	RchiOBHm_Chr3g0450571 RchiOBHm_Chr6g0289241
rosa_laevigata	RLG00000012318 RLG00000025721
rosa_multiflora	Rmu_co8346219.1_g000001 Rmu_sc0000078.1_g000047 Rmu_sc0001527.1_g000013 Rmu_sc0005951.1_g000008
rosa_roxburghii	Rroxscaffold_6G00428260 Rroxscaffold_7G00179420
rosa_rugosa	Rorug02G0628700 Rorug06G0202300
rosa_samantha	Rh3AG029400 Rh3BG029800 Rh3CG028700 Rh3DG029500 Rh6BG320600 Rh6CG326700 Rh6DG312600
rosa_wichuraiana	Rw3G002260 Rw6G027060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	511
AatII	GACGTC	2 cut(s)	18, 515
AccII	CGCG	3 cut(s)	122, 290, 374
AciI	CCGC	5 cut(s)	317, 374, 395, 440, 467
AcoI	YGGCCR	1 cut(s)	567
AcsI	RAATTY	1 cut(s)	154
AcuI	CTGAAG	2 cut(s)	113, 154
AcyI	GRCGYC	2 cut(s)	15, 512
AfaI	GTAC	1 cut(s)	119
AflII	CTTAAG	1 cut(s)	413
AgsI	TTSAA	2 cut(s)	196, 244
AjnI	CCWGG	3 cut(s)	253, 569, 621
AluBI	AGCT	5 cut(s)	178, 202, 220, 247, 412
AluI	AGCT	5 cut(s)	178, 202, 220, 247, 412
AlwNI	CAGNNNCTG	2 cut(s)	425, 470
AoxI	GGCC	3 cut(s)	332, 363, 567
ApeKI	GCWGC	4 cut(s)	398, 425, 470, 482
ApoI	RAATTY	1 cut(s)	154
Asp700I	GAANNNNTTC	1 cut(s)	239
AspA2I	CCTAGG	1 cut(s)	329
AspLEI	GCGC	2 cut(s)	91, 292
AsuC2I	CCSGG	1 cut(s)	519
AsuHPI	GGTGA	5 cut(s)	41, 118, 283, 547, 619
AvrII	CCTAGG	1 cut(s)	329
BbvCI	CCTCAGC	1 cut(s)	312
BbvI	GCAGC	4 cut(s)	385, 412, 457, 469
BciT130I	CCWGG	3 cut(s)	255, 571, 623
BcnI	CCSGG	1 cut(s)	519
BfaI	CTAG	1 cut(s)	330
BfoI	RGCGCY	1 cut(s)	92
BfrI	CTTAAG	1 cut(s)	413
BglI	GCCNNNNNGGC	1 cut(s)	479
BisI	GCNGC	8 cut(s)	375, 396, 399, 426, 441, 468, 471, 483
BlnI	CCTAGG	1 cut(s)	329
BlpI	GCTNAGC	2 cut(s)	354, 378
BlsI	GCNGC	8 cut(s)	376, 397, 400, 427, 442, 469, 472, 484
Bme1390I	CCNGG	4 cut(s)	255, 519, 571, 623
BmiI	GGNNCC	2 cut(s)	267, 564
BmrFI	CCNGG	4 cut(s)	255, 519, 571, 623
Bpu10I	CCTNAGC	4 cut(s)	312, 384, 408, 486
Bpu1102I	GCTNAGC	2 cut(s)	354, 378
BpuMI	CCSGG	1 cut(s)	519
BsaHI	GRCGYC	2 cut(s)	15, 512
BsaJI	CCNNGG	4 cut(s)	329, 360, 570, 621
BsaWI	WCCGGW	2 cut(s)	268, 604
Bse118I	RCCGGY	2 cut(s)	478, 556
Bse1I	ACTGG	1 cut(s)	115
BseBI	CCWGG	3 cut(s)	255, 571, 623
BseDI	CCNNGG	4 cut(s)	329, 360, 570, 621
BseMII	CTCAG	2 cut(s)	176, 303
BseNI	ACTGG	1 cut(s)	115
BseXI	GCAGC	4 cut(s)	385, 412, 457, 469
Bsh1236I	CGCG	3 cut(s)	122, 290, 374
BshFI	GGCC	3 cut(s)	334, 365, 569
BsiSI	CCGG	6 cut(s)	269, 479, 518, 557, 566, 605
BsnI	GGCC	3 cut(s)	334, 365, 569
Bsp143I	GATC	2 cut(s)	35, 123
Bsp1720I	GCTNAGC	2 cut(s)	354, 378
BspACI	CCGC	5 cut(s)	317, 374, 395, 440, 467
BspANI	GGCC	3 cut(s)	334, 365, 569
BspCNI	CTCAG	2 cut(s)	175, 304
BspFNI	CGCG	3 cut(s)	122, 290, 374
BspLI	GGNNCC	2 cut(s)	267, 564
BspTI	CTTAAG	1 cut(s)	413
BsrFI	RCCGGY	2 cut(s)	478, 556
BsrI	ACTGG	1 cut(s)	115
BssAI	RCCGGY	2 cut(s)	478, 556
BssECI	CCNNGG	4 cut(s)	329, 360, 570, 621
BssMI	GATC	2 cut(s)	35, 123
BssNI	GRCGYC	2 cut(s)	15, 512
BssT1I	CCWWGG	2 cut(s)	329, 360
Bst2UI	CCWGG	3 cut(s)	255, 571, 623
Bst4CI	ACNGT	1 cut(s)	349
BstACI	GRCGYC	2 cut(s)	15, 512
BstAFI	CTTAAG	1 cut(s)	413
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstC8I	GCNNGC	2 cut(s)	465, 480
BstDEI	CTNAG	7 cut(s)	162, 312, 354, 378, 384, 408, 486
BstFNI	CGCG	3 cut(s)	122, 290, 374
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	2 cut(s)	91, 292
BstKTI	GATC	2 cut(s)	38, 126
BstMBI	GATC	2 cut(s)	35, 123
BstMWI	GCNNNNNNNGC	7 cut(s)	86, 289, 371, 425, 464, 479, 491
BstNI	CCWGG	3 cut(s)	255, 571, 623
BstSCI	CCNGG	4 cut(s)	253, 517, 569, 621
BstUI	CGCG	3 cut(s)	122, 290, 374
BstV1I	GCAGC	4 cut(s)	385, 412, 457, 469
BsuRI	GGCC	3 cut(s)	334, 365, 569
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	2 cut(s)	465, 480
CaiI	CAGNNNCTG	2 cut(s)	425, 470
CfoI	GCGC	2 cut(s)	91, 292
Cfr10I	RCCGGY	2 cut(s)	478, 556
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	118
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	7 cut(s)	162, 312, 354, 378, 384, 408, 486
DpnI	GATC	2 cut(s)	37, 125
DpnII	GATC	2 cut(s)	35, 123
DrdI	GACNNNNNNGTC	1 cut(s)	511
DseDI	GACNNNNNNGTC	1 cut(s)	511
EaeI	YGGCCR	1 cut(s)	567
Eco130I	CCWWGG	2 cut(s)	329, 360
Eco57I	CTGAAG	2 cut(s)	113, 154
EcoRII	CCWGG	3 cut(s)	253, 569, 621
EcoT14I	CCWWGG	2 cut(s)	329, 360
ErhI	CCWWGG	2 cut(s)	329, 360
Fnu4HI	GCNGC	8 cut(s)	375, 396, 399, 426, 441, 468, 471, 483
Fsp4HI	GCNGC	8 cut(s)	375, 396, 399, 426, 441, 468, 471, 483
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	2 cut(s)	90, 291
GluI	GCNGC	8 cut(s)	375, 396, 399, 426, 441, 468, 471, 483
HaeII	RGCGCY	1 cut(s)	92
HaeIII	GGCC	3 cut(s)	334, 365, 569
HapII	CCGG	6 cut(s)	269, 479, 518, 557, 566, 605
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	2 cut(s)	91, 292
Hin1I	GRCGYC	2 cut(s)	15, 512
Hin6I	GCGC	2 cut(s)	89, 290
HinP1I	GCGC	2 cut(s)	89, 290
HindIII	AAGCTT	2 cut(s)	200, 410
HpaII	CCGG	6 cut(s)	269, 479, 518, 557, 566, 605
HphI	GGTGA	5 cut(s)	41, 118, 283, 547, 619
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	2 cut(s)	64, 172
Hpy99I	CGWCG	3 cut(s)	140, 508, 517
HpyAV	CCTTC	9 cut(s)	22, 54, 88, 178, 448, 520, 532, 538, 625
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	2 cut(s)	15, 512
HpyCH4V	TGCA	1 cut(s)	401
HpyF10VI	GCNNNNNNNGC	7 cut(s)	86, 289, 371, 425, 464, 479, 491
HpyF3I	CTNAG	7 cut(s)	162, 312, 354, 378, 384, 408, 486
HpySE526I	ACGT	2 cut(s)	15, 512
Hsp92I	GRCGYC	2 cut(s)	15, 512
HspAI	GCGC	2 cut(s)	89, 290
KroI	GCCGGC	1 cut(s)	478
KroNI	GCCGGC	1 cut(s)	480
Kzo9I	GATC	2 cut(s)	35, 123
LmnI	GCTCC	4 cut(s)	183, 252, 271, 568
Lsp1109I	GCAGC	4 cut(s)	385, 412, 457, 469
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	2 cut(s)	15, 512
MalI	GATC	2 cut(s)	37, 125
MboI	GATC	2 cut(s)	35, 123
MboII	GAAGA	6 cut(s)	208, 562, 592, 622, 625, 640
MluCI	AATT	2 cut(s)	154, 190
MnlI	CCTC	9 cut(s)	63, 70, 93, 133, 171, 261, 307, 501, 526
MroNI	GCCGGC	1 cut(s)	478
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	2 cut(s)	231, 414
MspA1I	CMGCKG	1 cut(s)	467
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	6 cut(s)	269, 479, 518, 557, 566, 605
MspR9I	CCNGG	4 cut(s)	255, 519, 571, 623
MvaI	CCWGG	3 cut(s)	255, 571, 623
MvnI	CGCG	3 cut(s)	122, 290, 374
MwoI	GCNNNNNNNGC	7 cut(s)	86, 289, 371, 425, 464, 479, 491
NaeI	GCCGGC	1 cut(s)	480
NciI	CCSGG	1 cut(s)	519
NdeII	GATC	2 cut(s)	35, 123
NgoMIV	GCCGGC	1 cut(s)	478
NlaIV	GGNNCC	2 cut(s)	267, 564
NmeAIII	GCCGAG	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	1 cut(s)	509
PdiI	GCCGGC	1 cut(s)	480
PdmI	GAANNNNTTC	1 cut(s)	239
PflFI	GACNNNGTC	1 cut(s)	106
PkrI	GCNGC	8 cut(s)	376, 397, 400, 427, 442, 469, 472, 484
Psp6I	CCWGG	3 cut(s)	253, 569, 621
PspGI	CCWGG	3 cut(s)	253, 569, 621
PspN4I	GGNNCC	2 cut(s)	267, 564
PstNI	CAGNNNCTG	2 cut(s)	425, 470
PsyI	GACNNNGTC	1 cut(s)	106
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	231, 414
SatI	GCNGC	8 cut(s)	375, 396, 399, 426, 441, 468, 471, 483
Sau3AI	GATC	2 cut(s)	35, 123
ScrFI	CCNGG	4 cut(s)	255, 519, 571, 623
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	2 cut(s)	154, 190
SsiI	CCGC	5 cut(s)	317, 374, 395, 440, 467
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	4 cut(s)	253, 517, 569, 621
StyI	CCWWGG	2 cut(s)	329, 360
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	2 cut(s)	18, 515
TaqI	TCGA	4 cut(s)	63, 110, 138, 503
TasI	AATT	2 cut(s)	154, 190
TauI	GCSGC	4 cut(s)	377, 398, 443, 470
Tru1I	TTAA	2 cut(s)	231, 414
Tru9I	TTAA	2 cut(s)	231, 414
TscAI	CASTG	1 cut(s)	426
TseI	GCWGC	4 cut(s)	398, 425, 470, 482
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	426
Tth111I	GACNNNGTC	1 cut(s)	106
Vha464I	CTTAAG	1 cut(s)	413
XapI	RAATTY	1 cut(s)	154
XmaJI	CCTAGG	1 cut(s)	329
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	1 cut(s)	330
ZraI	GACGTC	2 cut(s)	16, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.