Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003009

Physical Location & Seq

Genomic Coordinates Reverse (-)

18295885 .. 18306389

Gene Structure 10505 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCCGAGGACGAACAGATCGCCGTCGCCGCCACCGAGACCGTCGACCCTTCTCCCGAGTCCGCCGACCCCCCCGCCGCCGATGACAAGCCGGAGGCCAAGTCCGGCAGGGCCTCCAAGGCCAAGGAGCCCAAGGCTAAGAAGCCCGCCGCTCCCAAAAAGGCCAGGACTCCTCCCACTCATCCTCCTTACGAAGAGATGATCAAGGATGCGATTGTGACCCTCAAGGAGAGGACTGGGTCGAGCCAGTACGCGATCACTAAGTTCATCGAGGAGAAGCACAAGAATCTCCCCCAGAACTTCAAGAAGCTTCTGCTCTACCATTTGAAGAAGCTCGTCAGCTCCGATAAGCTCACCAAGGTCAAAAGCTCCTATAAGATCCCCTCCGCTAAGTCCCTCGCAGCTCCACCCAAGCCCGCCGCTGCTCCGGCGAAGAAGAAGCCCGCCGCCGCGGCCAAGCCTAAGGCCAAGGCGGCTGCCAAGCCTAAGGGAGGCAAAACCAAGTCGGTCAAGGCGGCGAGCAAGTCTCCGGCCAAGGCTAAGGCCGCGGCTGCTAAGCCAAAGCCGAAGCCGAAAGCCAAGCCTGCTGCTAAGCCTAAGCCAGCTGCCAAGCCTAAGGCGGCTCCTCCGGCGAAGGCTAAGGCTGCTCCGGCTAAGGCCAAGGCTGCTCCGGCCAAGGCCAAGGCTGCTCCGGCTGCCAAGCCTAAGGCAGCGGCTCCCAAGCCGAAGCTCAAGGAGAAGCCAGCTAAGGCTGCAAGGACGTTGACCAGGTCGTCGCCTGGGAGGAAGGCTCCGGCGGCCAGGGCGGCGAAGGCGGCAGCACCGAAGAAGGCTGCGGCACCGAAGAAGGCACCCACCCGCACTGTGAAGCCCAGAAGTGTGAAGTCGCCGGCGAAGAAAGCTCCGGCTAGGAAGGCCAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005739 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

309

Amino Acids

31.82

Weight (kDa)

10.67

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	61 - 122	2.8e-19	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30620 AT2G30620
fragaria_vesca	FvH4_2g02381 FvH4_2g22280 FvH4_6g02630 FvH4_7g09410
malus_domestica	MD01G1078700.v1.1 MD04G1226600.v1.1 MD05G1204100.v1.1 MD10G1191200.v1.1 MD12G1243700.v1.1
prunus_persica	Prupe.6G345300_v2.0.a1 Prupe.8G230400_v2.0.a1
pyrus_communis	pycom04g19980 pycom05g19050 pycom10g16480 pycom12g22270
rosa_chinensis	RchiOBHm_Chr3g0450571 RchiOBHm_Chr6g0289241
rosa_laevigata	RLG00000012318 RLG00000025721
rosa_multiflora	Rmu_co8346219.1_g000001 Rmu_sc0000078.1_g000047 Rmu_sc0001527.1_g000013 Rmu_sc0005951.1_g000008
rosa_roxburghii	Rroxscaffold_6G00428260 Rroxscaffold_7G00179420
rosa_rugosa	Rorug02G0628700 Rorug06G0202300
rosa_samantha	Rh3AG029400 Rh3BG029800 Rh3CG028700 Rh3DG029500 Rh6BG320600 Rh6CG326700 Rh6DG312600
rosa_wichuraiana	Rw3G002260 Rw6G027060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	772
AccB1I	GGYRCC	2 cut(s)	838, 850
AccBSI	CCGCTC	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	45
AccII	CGCG	3 cut(s)	254, 452, 548
AclWI	GGATC	1 cut(s)	373
AcoI	YGGCCR	5 cut(s)	3, 453, 531, 672, 798
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	491
AgsI	TTSAA	2 cut(s)	304, 328
AjnI	CCWGG	5 cut(s)	164, 767, 778, 800, 917
Alw26I	GTCTC	2 cut(s)	32, 531
AlwI	GGATC	1 cut(s)	373
Ama87I	CYCGRG	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	346
AvaI	CYCGRG	1 cut(s)	56
AxyI	CCTNAGG	4 cut(s)	462, 486, 615, 705
BanI	GGYRCC	2 cut(s)	838, 850
BanII	GRGCYC	1 cut(s)	132
BceAI	ACGGC	1 cut(s)	8
BciT130I	CCWGG	5 cut(s)	166, 769, 780, 802, 919
BclI	TGATCA	1 cut(s)	201
BcoDI	GTCTC	2 cut(s)	32, 531
BfaI	CTAG	1 cut(s)	909
BglI	GCCNNNNNGGC	4 cut(s)	119, 452, 473, 806
BlpI	GCTNAGC	2 cut(s)	555, 591
Bme1390I	CCNGG	5 cut(s)	166, 769, 780, 802, 919
BmeT110I	CYCGRG	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	6 cut(s)	129, 624, 717, 792, 840, 852
BmrFI	CCNGG	5 cut(s)	166, 769, 780, 802, 919
BmrI	ACTGGG	1 cut(s)	246
BmsI	GCATC	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	246
BplI	GAGNNNNNCTC	4 cut(s)	511, 543, 775, 807
Bpu10I	CCTNAGC	5 cut(s)	540, 597, 639, 654, 747
Bpu1102I	GCTNAGC	2 cut(s)	555, 591
BpuEI	CTTGAG	2 cut(s)	209, 716
BsaI	GGTCTC	1 cut(s)	32
BsaXI	ACNNNNNCTCC	4 cut(s)	86, 116, 169, 199
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse118I	RCCGGY	1 cut(s)	889
Bse1I	ACTGG	2 cut(s)	241, 247
Bse21I	CCTNAGG	4 cut(s)	462, 486, 615, 705
BseBI	CCWGG	5 cut(s)	166, 769, 780, 802, 919
BseGI	GGATG	2 cut(s)	181, 214
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseNI	ACTGG	2 cut(s)	241, 247
BseRI	GAGGAG	3 cut(s)	162, 287, 615
Bsh1236I	CGCG	3 cut(s)	254, 452, 548
BshNI	GGYRCC	2 cut(s)	838, 850
BsiHKCI	CYCGRG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	2 cut(s)	32, 531
BsmFI	GGGAC	1 cut(s)	379
Bso31I	GGTCTC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	18, 201, 255, 378
Bsp1720I	GCTNAGC	2 cut(s)	555, 591
BspFNI	CGCG	3 cut(s)	254, 452, 548
BspLI	GGNNCC	6 cut(s)	129, 624, 717, 792, 840, 852
BspPI	GGATC	1 cut(s)	373
BspT107I	GGYRCC	2 cut(s)	838, 850
BspTNI	GGTCTC	1 cut(s)	32
BsrBI	CCGCTC	1 cut(s)	152
BsrFI	RCCGGY	1 cut(s)	889
BsrI	ACTGG	2 cut(s)	241, 247
BssAI	RCCGGY	1 cut(s)	889
BssMI	GATC	4 cut(s)	18, 201, 255, 378
BssT1I	CCWWGG	9 cut(s)	117, 123, 132, 357, 468, 534, 660, 675, 681
Bst2UI	CCWGG	5 cut(s)	166, 769, 780, 802, 919
Bst4CI	ACNGT	2 cut(s)	43, 865
Bst6I	CTCTTC	1 cut(s)	189
BstC8I	GCNNGC	8 cut(s)	147, 417, 444, 520, 585, 603, 744, 891
BstDSI	CCRYGG	2 cut(s)	450, 546
BstENI	CCTNNNNNAGG	1 cut(s)	489
BstF5I	GGATG	2 cut(s)	181, 214
BstFNI	CGCG	3 cut(s)	254, 452, 548
BstKTI	GATC	4 cut(s)	21, 204, 258, 381
BstMAI	GTCTC	2 cut(s)	32, 531
BstMBI	GATC	4 cut(s)	18, 201, 255, 378
BstNI	CCWGG	5 cut(s)	166, 769, 780, 802, 919
BstSCI	CCNGG	5 cut(s)	164, 767, 778, 800, 917
BstUI	CGCG	3 cut(s)	254, 452, 548
BstX2I	RGATCY	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	378
Bsu36I	CCTNAGG	4 cut(s)	462, 486, 615, 705
BtgI	CCRYGG	2 cut(s)	450, 546
BtsCI	GGATG	2 cut(s)	181, 214
BtsIMutI	CAGTG	1 cut(s)	861
Cac8I	GCNNGC	8 cut(s)	147, 417, 444, 520, 585, 603, 744, 891
Cfr10I	RCCGGY	1 cut(s)	889
Cfr13I	GGNCC	1 cut(s)	111
Cfr42I	CCGCGG	2 cut(s)	453, 549
CsiI	ACCWGGT	1 cut(s)	767
Csp6I	GTAC	1 cut(s)	250
CviQI	GTAC	1 cut(s)	250
DpnI	GATC	4 cut(s)	20, 203, 257, 380
DpnII	GATC	4 cut(s)	18, 201, 255, 378
DrdI	GACNNNNNNGTC	1 cut(s)	772
DseDI	GACNNNNNNGTC	1 cut(s)	772
EaeI	YGGCCR	5 cut(s)	3, 453, 531, 672, 798
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
EciI	GGCGGA	1 cut(s)	52
Eco130I	CCWWGG	9 cut(s)	117, 123, 132, 357, 468, 534, 660, 675, 681
Eco24I	GRGCYC	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	32
Eco81I	CCTNAGG	4 cut(s)	462, 486, 615, 705
Eco88I	CYCGRG	1 cut(s)	56
EcoNI	CCTNNNNNAGG	1 cut(s)	489
EcoO109I	RGGNCCY	1 cut(s)	111
EcoRII	CCWGG	5 cut(s)	164, 767, 778, 800, 917
EcoT14I	CCWWGG	9 cut(s)	117, 123, 132, 357, 468, 534, 660, 675, 681
EcoT38I	GRGCYC	1 cut(s)	132
ErhI	CCWWGG	9 cut(s)	117, 123, 132, 357, 468, 534, 660, 675, 681
FaiI	YATR	1 cut(s)	375
FaqI	GGGAC	1 cut(s)	379
FauI	CCCGC	5 cut(s)	82, 154, 424, 451, 866
FbaI	TGATCA	1 cut(s)	201
FblI	GTMKAC	1 cut(s)	45
FokI	GGATG	2 cut(s)	168, 221
FriOI	GRGCYC	1 cut(s)	132
FspBI	CTAG	1 cut(s)	909
HincII	GTYRAC	2 cut(s)	46, 765
HindII	GTYRAC	2 cut(s)	46, 765
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	3 cut(s)	59, 169, 286
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	2 cut(s)	46, 765
Hpy188I	TCNGA	1 cut(s)	346
Hpy188III	TCNNGA	2 cut(s)	56, 304
Hpy8I	GTNNAC	2 cut(s)	46, 765
Hpy99I	CGWCG	3 cut(s)	29, 47, 778
HpyAV	CCTTC	7 cut(s)	60, 628, 781, 805, 823, 841, 907
HpyCH4III	ACNGT	2 cut(s)	43, 865
HpyCH4IV	ACGT	1 cut(s)	761
HpyCH4V	TGCA	1 cut(s)	755
HpySE526I	ACGT	1 cut(s)	761
KroI	GCCGGC	1 cut(s)	889
KroNI	GCCGGC	1 cut(s)	891
Ksp22I	TGATCA	1 cut(s)	201
KspI	CCGCGG	2 cut(s)	453, 549
Kzo9I	GATC	4 cut(s)	18, 201, 255, 378
LweI	GCATC	1 cut(s)	199
MabI	ACCWGGT	1 cut(s)	767
MaeI	CTAG	1 cut(s)	909
MaeII	ACGT	1 cut(s)	761
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	4 cut(s)	20, 203, 257, 380
MbiI	CCGCTC	1 cut(s)	152
MboI	GATC	4 cut(s)	18, 201, 255, 378
MboII	GAAGA	7 cut(s)	206, 340, 445, 448, 838, 856, 907
MflI	RGATCY	1 cut(s)	378
MhlI	GDGCHC	1 cut(s)	132
MlyI	GAGTC	2 cut(s)	68, 163
MreI	CGCCGGCG	1 cut(s)	889
MroNI	GCCGGC	1 cut(s)	889
MspA1I	CMGCKG	5 cut(s)	422, 452, 548, 605, 713
MspR9I	CCNGG	5 cut(s)	166, 769, 780, 802, 919
MvaI	CCWGG	5 cut(s)	166, 769, 780, 802, 919
MvnI	CGCG	3 cut(s)	254, 452, 548
NaeI	GCCGGC	1 cut(s)	891
NdeII	GATC	4 cut(s)	18, 201, 255, 378
NgoMIV	GCCGGC	1 cut(s)	889
NlaIV	GGNNCC	6 cut(s)	129, 624, 717, 792, 840, 852
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	2 cut(s)	33, 342
PdiI	GCCGGC	1 cut(s)	891
PfeI	GAWTC	1 cut(s)	286
PflFI	GACNNNGTC	2 cut(s)	238, 769
PleI	GAGTC	2 cut(s)	67, 163
PpsI	GAGTC	2 cut(s)	67, 163
Psp6I	CCWGG	5 cut(s)	164, 767, 778, 800, 917
PspGI	CCWGG	5 cut(s)	164, 767, 778, 800, 917
PspN4I	GGNNCC	6 cut(s)	129, 624, 717, 792, 840, 852
PspPI	GGNCC	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	378
PsyI	GACNNNGTC	2 cut(s)	238, 769
PvuII	CAGCTG	1 cut(s)	605
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SacII	CCGCGG	2 cut(s)	453, 549
SalI	GTCGAC	1 cut(s)	44
Sau3AI	GATC	4 cut(s)	18, 201, 255, 378
Sau96I	GGNCC	1 cut(s)	111
SchI	GAGTC	2 cut(s)	68, 163
ScrFI	CCNGG	5 cut(s)	166, 769, 780, 802, 919
SduI	GDGCHC	1 cut(s)	132
SexAI	ACCWGGT	1 cut(s)	767
SfaNI	GCATC	1 cut(s)	199
SfiI	GGCCNNNNNGGCC	1 cut(s)	119
Sfr303I	CCGCGG	2 cut(s)	453, 549
SgrAI	CRCCGGYG	1 cut(s)	889
SgrBI	CCGCGG	2 cut(s)	453, 549
SmlI	CTYRAG	2 cut(s)	224, 731
SmoI	CTYRAG	2 cut(s)	224, 731
SspMI	CTAG	1 cut(s)	909
StyD4I	CCNGG	5 cut(s)	164, 767, 778, 800, 917
StyI	CCWWGG	9 cut(s)	117, 123, 132, 357, 468, 534, 660, 675, 681
TaaI	ACNGT	2 cut(s)	43, 865
TaiI	ACGT	1 cut(s)	764
TaqI	TCGA	3 cut(s)	45, 242, 270
TaqII	GACCGA	1 cut(s)	496
TfiI	GAWTC	1 cut(s)	286
TscAI	CASTG	1 cut(s)	868
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	256
TspRI	CASTG	1 cut(s)	868
Tth111I	GACNNNGTC	2 cut(s)	238, 769
XagI	CCTNNNNNAGG	1 cut(s)	489
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	1 cut(s)	909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.