Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003009

Physical Location & Seq

Genomic Coordinates Reverse (-)

1512621 .. 1513696

Gene Structure 1076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g02630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCCGCCGAAACCGCCGTCGTCAAGGCCAAGCGAGCACCGCCAGCTCACCCTCCCTTCTCGGAGATGATTACGGAGGCGATTGTGGCGCTGAAGGAGAGGACTGGTTCAAGCCAGTACGCCATCACCAAATTCGTGGAGGAGAAGCACAAGCAGTTGCCTCAGAGCTTCAGGAAGCTTCTGCTTCTCAACCTGAAGAAGCTCGTCGCCTCCGGCAAGCTCGTCAAGGTCAAAGCCTCCTTCAAGCTCCCTCCTCGCTCCTCCGCCGCCGCGGCCTCTGCTGCTCCGGCGAAGGAGAAGACCAAGCCGGAAGCTTCCAAGGCTAAGAAGTCCACCGCCGCCGCCGCGAAGACTACTTCTAAGCCGAAGGCGAAAACCGTCGCGAAACCGAAGGCTAAAACCGTCGCGAAATCCAAGGCGAAAACCGTGGCGAAACCGAAGGCGGCGGCGAAACCGAAGGCCAAGGCGGTGGTGAAGAAACCGAAGGCATCGGCGGAGGCTAAACCGGCTGCGAAGGCGGCAAGGACATCGTCGAGGACTTCGCCGGGGAAGAAGGTGGCGGCGAAATCCAAGGCGGCGACCAAGGTTGTGAAGAAGGCCAAGAGTGTGAAGTCTCCGGCGAAGAAGAAGGTTCAGCCAAAGAGGGGCAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005739 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

219

Amino Acids

22.81

Weight (kDa)

11.03

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	17 - 83	2.6e-20	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30620 AT2G30620
fragaria_vesca	FvH4_2g02381 FvH4_2g22280 FvH4_6g02630 FvH4_7g09410
malus_domestica	MD01G1078700.v1.1 MD04G1226600.v1.1 MD05G1204100.v1.1 MD10G1191200.v1.1 MD12G1243700.v1.1
prunus_persica	Prupe.6G345300_v2.0.a1 Prupe.8G230400_v2.0.a1
pyrus_communis	pycom04g19980 pycom05g19050 pycom10g16480 pycom12g22270
rosa_chinensis	RchiOBHm_Chr3g0450571 RchiOBHm_Chr6g0289241
rosa_laevigata	RLG00000012318 RLG00000025721
rosa_multiflora	Rmu_co8346219.1_g000001 Rmu_sc0000078.1_g000047 Rmu_sc0001527.1_g000013 Rmu_sc0005951.1_g000008
rosa_roxburghii	Rroxscaffold_6G00428260 Rroxscaffold_7G00179420
rosa_rugosa	Rorug02G0628700 Rorug06G0202300
rosa_samantha	Rh3AG029400 Rh3BG029800 Rh3CG028700 Rh3DG029500 Rh6BG320600 Rh6CG326700 Rh6DG312600
rosa_wichuraiana	Rw3G002260 Rw6G027060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	272, 347, 383, 407
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	3 cut(s)	113, 154, 215
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	644
AgsI	TTSAA	2 cut(s)	111, 244
AluBI	AGCT	7 cut(s)	47, 168, 178, 202, 220, 247, 314
AluI	AGCT	7 cut(s)	47, 168, 178, 202, 220, 247, 314
Alw21I	GWGCWC	1 cut(s)	40
Alw26I	GTCTC	1 cut(s)	618
AoxI	GGCC	5 cut(s)	3, 27, 273, 459, 597
ApeKI	GCWGC	2 cut(s)	281, 509
ApoI	RAATTY	1 cut(s)	131
ArsI	GACNNNNNNTTYG	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	91
AsuC2I	CCSGG	1 cut(s)	546
AsuHPI	GGTGA	3 cut(s)	41, 118, 484
BbsI	GAAGAC	2 cut(s)	305, 356
Bbv12I	GWGCWC	1 cut(s)	40
BbvI	GCAGC	2 cut(s)	268, 496
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	2
BcgI	CGANNNNNNTGC	2 cut(s)	510, 544
BcnI	CCSGG	1 cut(s)	546
BcoDI	GTCTC	1 cut(s)	618
BfoI	RGCGCY	1 cut(s)	92
BglI	GCCNNNNNGGC	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	546
BmrFI	CCNGG	1 cut(s)	546
BmsI	GCATC	1 cut(s)	497
BpiI	GAAGAC	2 cut(s)	305, 356
BpuMI	CCSGG	1 cut(s)	546
BsaJI	CCNNGG	8 cut(s)	270, 318, 414, 426, 462, 545, 570, 582
Bsc4I	CCNNNNNNNGG	1 cut(s)	644
Bse118I	RCCGGY	1 cut(s)	505
Bse1I	ACTGG	2 cut(s)	109, 115
BseDI	CCNNGG	8 cut(s)	270, 318, 414, 426, 462, 545, 570, 582
BseLI	CCNNNNNNNGG	1 cut(s)	644
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	2 cut(s)	109, 115
BseRI	GAGGAG	3 cut(s)	155, 243, 250
BseXI	GCAGC	2 cut(s)	268, 496
Bsh1236I	CGCG	4 cut(s)	272, 347, 383, 407
BshFI	GGCC	5 cut(s)	5, 29, 275, 461, 599
BsiHKAI	GWGCWC	1 cut(s)	40
BsiSI	CCGG	6 cut(s)	213, 287, 308, 506, 545, 617
BslI	CCNNNNNNNGG	1 cut(s)	644
BsmAI	GTCTC	1 cut(s)	618
BsnI	GGCC	5 cut(s)	5, 29, 275, 461, 599
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp68I	TCGCGA	2 cut(s)	383, 407
BspANI	GGCC	5 cut(s)	5, 29, 275, 461, 599
BspCNI	CTCAG	1 cut(s)	175
BspFNI	CGCG	4 cut(s)	272, 347, 383, 407
BsrFI	RCCGGY	1 cut(s)	505
BsrI	ACTGG	2 cut(s)	109, 115
BssAI	RCCGGY	1 cut(s)	505
BssECI	CCNNGG	8 cut(s)	270, 318, 414, 426, 462, 545, 570, 582
BssT1I	CCWWGG	5 cut(s)	318, 414, 462, 570, 582
Bst4CI	ACNGT	3 cut(s)	379, 403, 427
BstC8I	GCNNGC	3 cut(s)	36, 45, 218
BstDEI	CTNAG	3 cut(s)	162, 324, 360
BstDSI	CCRYGG	2 cut(s)	270, 426
BstFNI	CGCG	4 cut(s)	272, 347, 383, 407
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	91
BstMAI	GTCTC	1 cut(s)	618
BstSCI	CCNGG	1 cut(s)	544
BstUI	CGCG	4 cut(s)	272, 347, 383, 407
BstV1I	GCAGC	2 cut(s)	268, 496
BstV2I	GAAGAC	2 cut(s)	305, 356
BstXI	CCANNNNNNTGG	2 cut(s)	136, 469
BsuRI	GGCC	5 cut(s)	5, 29, 275, 461, 599
BtgI	CCRYGG	2 cut(s)	270, 426
BtuMI	TCGCGA	2 cut(s)	383, 407
Cac8I	GCNNGC	3 cut(s)	36, 45, 218
CfoI	GCGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	505
Cfr42I	CCGCGG	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	118
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	3 cut(s)	162, 324, 360
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	2 cut(s)	253, 509
Eco130I	CCWWGG	5 cut(s)	318, 414, 462, 570, 582
Eco57I	CTGAAG	3 cut(s)	113, 154, 215
EcoT14I	CCWWGG	5 cut(s)	318, 414, 462, 570, 582
ErhI	CCWWGG	5 cut(s)	318, 414, 462, 570, 582
GlaI	GCGC	1 cut(s)	90
HaeII	RGCGCY	1 cut(s)	92
HaeIII	GGCC	5 cut(s)	5, 29, 275, 461, 599
HapII	CCGG	6 cut(s)	213, 287, 308, 506, 545, 617
HhaI	GCGC	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HindIII	AAGCTT	2 cut(s)	176, 312
HpaII	CCGG	6 cut(s)	213, 287, 308, 506, 545, 617
HphI	GGTGA	3 cut(s)	41, 118, 484
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	2 cut(s)	64, 165
Hpy188III	TCNNGA	3 cut(s)	172, 382, 406
Hpy8I	GTNNAC	1 cut(s)	333
Hpy99I	CGWCG	5 cut(s)	23, 209, 383, 407, 535
HpyCH4III	ACNGT	3 cut(s)	379, 403, 427
HpyF3I	CTNAG	3 cut(s)	162, 324, 360
HspAI	GCGC	1 cut(s)	89
KspI	CCGCGG	1 cut(s)	273
LmnI	GCTCC	3 cut(s)	252, 263, 289
Lsp1109I	GCAGC	2 cut(s)	268, 496
LweI	GCATC	1 cut(s)	497
MboII	GAAGA	8 cut(s)	208, 310, 361, 487, 562, 604, 634, 637
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	6 cut(s)	213, 287, 308, 506, 545, 617
MspR9I	CCNGG	1 cut(s)	546
MvnI	CGCG	4 cut(s)	272, 347, 383, 407
NciI	CCSGG	1 cut(s)	546
NruI	TCGCGA	2 cut(s)	383, 407
PflFI	GACNNNGTC	1 cut(s)	529
PsyI	GACNNNGTC	1 cut(s)	529
RruI	TCGCGA	2 cut(s)	383, 407
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SacII	CCGCGG	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	546
SduI	GDGCHC	1 cut(s)	40
SfaNI	GCATC	1 cut(s)	497
Sfr303I	CCGCGG	1 cut(s)	273
SgrBI	CCGCGG	1 cut(s)	273
Sse9I	AATT	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	544
StyI	CCWWGG	5 cut(s)	318, 414, 462, 570, 582
TaaI	ACNGT	3 cut(s)	379, 403, 427
TaqI	TCGA	1 cut(s)	533
TasI	AATT	1 cut(s)	131
TseI	GCWGC	2 cut(s)	281, 509
TspGWI	ACGGA	1 cut(s)	89
Tth111I	GACNNNGTC	1 cut(s)	529
XapI	RAATTY	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.