Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003009

Physical Location & Seq

Genomic Coordinates Reverse (-)

20561188 .. 20562407

Gene Structure 1220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G230400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCATCCGAAGAAGCGATCGCCGCCGTGGCTGAGACGGTCGAGAATCCTCCACCGGAGCCGACCAGCACCGAGCCGGCCGAGGAAAAACCGGCGGCCAAAACCGGCAAGGCGAGCAAAGCCAAGGAACCGAAGGCGAAGAAACCAGCCGCTCCCAAGAAGGCTAGAACCACTCCCACTCACCCTCCTTATGAAGAGATGGTTAAGGATGCGATTGTGACTTTGAAAGAGAGAACTGGTTCGAGCCAGTATGCGATCACCAAGTTCATTGAAGAAAAGCACAAGCAACTCCCTCCAAACTTCAAGAAGCTTCTACTTTACCATTTGAAGAAGCTTGTTTCTTCCGATAAGCTCGTCAAGGTCAAAAGTTCATTCAAGCTTCCTTCTGCTAGGTCCGCCGCGGCACCTAAGCCTGCTTCTCCGGTGAAGAAGAAGCCAGTGGCCGCCGCCAAGCCCAAGGCTAAAGCTGCTGCGAAGCCTAAGGGAGGCAAAACGACTAAGCCAGCAAGCAAAGCTCCGGCGAAGCCAAAGGCTGCTGCAGCAAAGCCAAAGCCTAAGCCGAAACCTGCTGCAAAGCCGAAGGCTGCTGCTCCAAAGCCCAAAGCTGCTGCTCCTGTCAAGTCTAAGCCGGTTGCAACTGTCAAGCCAAAAGCTACCGCTGCCAAGCCAAAAGCTGCAGCTGCCAAGCCAAAGGCAGCAGCTCCAAGGCCCAAGCCCAAGGAGAGGCCGGCCAAGGCGGCGCGGACTCTGACGAGGTCATCTCCGGGAAGAAAAGCTCCGGCGGCCAAGCCTGCACCGAAGAAAGCTGCGACTCCAAAGAAGGCTCCAACTCGGAGCGTGAAGCCCAGAAGCGTCAAGTCGCCGGCGAAGAAAGCTCCAGCTCGGAAGGGAAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005739 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

300

Amino Acids

31.17

Weight (kDa)

10.8

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30620 AT2G30620
fragaria_vesca	FvH4_2g02381 FvH4_2g22280 FvH4_6g02630 FvH4_7g09410
malus_domestica	MD01G1078700.v1.1 MD04G1226600.v1.1 MD05G1204100.v1.1 MD10G1191200.v1.1 MD12G1243700.v1.1
prunus_persica	Prupe.6G345300_v2.0.a1 Prupe.8G230400_v2.0.a1
pyrus_communis	pycom04g19980 pycom05g19050 pycom10g16480 pycom12g22270
rosa_chinensis	RchiOBHm_Chr3g0450571 RchiOBHm_Chr6g0289241
rosa_laevigata	RLG00000012318 RLG00000025721
rosa_multiflora	Rmu_co8346219.1_g000001 Rmu_sc0000078.1_g000047 Rmu_sc0001527.1_g000013 Rmu_sc0005951.1_g000008
rosa_roxburghii	Rroxscaffold_6G00428260 Rroxscaffold_7G00179420
rosa_rugosa	Rorug02G0628700 Rorug06G0202300
rosa_samantha	Rh3AG029400 Rh3BG029800 Rh3CG028700 Rh3DG029500 Rh6BG320600 Rh6CG326700 Rh6DG312600
rosa_wichuraiana	Rw3G002260 Rw6G027060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	574
AccB1I	GGYRCC	1 cut(s)	403
AccBSI	CCGCTC	1 cut(s)	152
AccII	CGCG	2 cut(s)	401, 742
AcoI	YGGCCR	5 cut(s)	78, 96, 441, 729, 783
AfiI	CCNNNNNNNGG	2 cut(s)	485, 723
AgsI	TTSAA	5 cut(s)	226, 272, 304, 328, 376
Alw26I	GTCTC	1 cut(s)	29
AoxI	GGCC	7 cut(s)	78, 96, 441, 707, 725, 729, 783
AsiSI	GCGATCGC	1 cut(s)	21
Asp700I	GAANNNNTTC	1 cut(s)	238
AspLEI	GCGC	1 cut(s)	742
AspS9I	GGNCC	2 cut(s)	393, 708
AsuC2I	CCSGG	1 cut(s)	765
AsuHPI	GGTGA	3 cut(s)	173, 250, 436
AvaII	GGWCC	1 cut(s)	393
AxyI	CCTNAGG	1 cut(s)	480
BanI	GGYRCC	1 cut(s)	403
BccI	CCATC	1 cut(s)	193
BceAI	ACGGC	1 cut(s)	11
BcnI	CCSGG	1 cut(s)	765
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	2 cut(s)	165, 390
BfmI	CTRYAG	2 cut(s)	537, 675
BfuAI	ACCTGC	1 cut(s)	574
BglI	GCCNNNNNGGC	2 cut(s)	29, 737
Bme1390I	CCNGG	1 cut(s)	765
Bme18I	GGWCC	1 cut(s)	393
BmgT120I	GGNCC	2 cut(s)	393, 708
BmiI	GGNNCC	4 cut(s)	60, 129, 405, 825
BmrFI	CCNGG	1 cut(s)	765
BmsI	GCATC	2 cut(s)	14, 199
BplI	GAGNNNNNCTC	2 cut(s)	745, 777
BpmI	CTGGAG	1 cut(s)	861
Bpu10I	CCTNAGC	2 cut(s)	408, 555
BpuMI	CCSGG	1 cut(s)	765
BsaJI	CCNNGG	8 cut(s)	27, 81, 123, 399, 456, 704, 717, 732
BsaWI	WCCGGW	2 cut(s)	55, 421
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	2 cut(s)	485, 723
Bse118I	RCCGGY	6 cut(s)	76, 91, 104, 628, 727, 862
Bse1I	ACTGG	3 cut(s)	241, 247, 437
Bse21I	CCTNAGG	1 cut(s)	480
BseDI	CCNNGG	8 cut(s)	27, 81, 123, 399, 456, 704, 717, 732
BseGI	GGATG	2 cut(s)	5, 214
BseLI	CCNNNNNNNGG	2 cut(s)	485, 723
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	3 cut(s)	241, 247, 437
BseX3I	CGGCCG	1 cut(s)	78
BsgI	GTGCAG	1 cut(s)	777
Bsh1236I	CGCG	2 cut(s)	401, 742
Bsh1285I	CGRYCG	3 cut(s)	21, 42, 81
BshFI	GGCC	7 cut(s)	80, 98, 443, 709, 727, 731, 785
BshNI	GGYRCC	1 cut(s)	403
BsiEI	CGRYCG	3 cut(s)	21, 42, 81
BslI	CCNNNNNNNGG	2 cut(s)	485, 723
BsmAI	GTCTC	1 cut(s)	29
BsmBI	CGTCTC	1 cut(s)	29
BsnI	GGCC	7 cut(s)	80, 98, 443, 709, 727, 731, 785
Bsp143I	GATC	2 cut(s)	18, 255
BspANI	GGCC	7 cut(s)	80, 98, 443, 709, 727, 731, 785
BspCNI	CTCAG	1 cut(s)	25
BspFNI	CGCG	2 cut(s)	401, 742
BspLI	GGNNCC	4 cut(s)	60, 129, 405, 825
BspMAI	CTGCAG	2 cut(s)	541, 679
BspMI	ACCTGC	1 cut(s)	574
BspT107I	GGYRCC	1 cut(s)	403
BsrBI	CCGCTC	1 cut(s)	152
BsrFI	RCCGGY	6 cut(s)	76, 91, 104, 628, 727, 862
BsrI	ACTGG	3 cut(s)	241, 247, 437
BssAI	RCCGGY	6 cut(s)	76, 91, 104, 628, 727, 862
BssECI	CCNNGG	8 cut(s)	27, 81, 123, 399, 456, 704, 717, 732
BssMI	GATC	2 cut(s)	18, 255
BssT1I	CCWWGG	5 cut(s)	123, 456, 704, 717, 732
Bst4CI	ACNGT	2 cut(s)	40, 640
Bst6I	CTCTTC	1 cut(s)	189
BstC8I	GCNNGC	8 cut(s)	78, 115, 414, 504, 508, 729, 792, 864
BstDEI	CTNAG	6 cut(s)	33, 408, 480, 498, 555, 624
BstDSI	CCRYGG	2 cut(s)	27, 399
BstENI	CCTNNNNNAGG	1 cut(s)	483
BstF5I	GGATG	2 cut(s)	5, 214
BstFNI	CGCG	2 cut(s)	401, 742
BstHHI	GCGC	1 cut(s)	742
BstKTI	GATC	2 cut(s)	21, 258
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	2 cut(s)	18, 255
BstMCI	CGRYCG	3 cut(s)	21, 42, 81
BstSCI	CCNGG	1 cut(s)	763
BstSFI	CTRYAG	2 cut(s)	537, 675
BstUI	CGCG	2 cut(s)	401, 742
BstZI	CGGCCG	1 cut(s)	78
Bsu36I	CCTNAGG	1 cut(s)	480
BsuRI	GGCC	7 cut(s)	80, 98, 443, 709, 727, 731, 785
BtgI	CCRYGG	2 cut(s)	27, 399
BtsCI	GGATG	2 cut(s)	5, 214
BtsIMutI	CAGTG	1 cut(s)	444
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	8 cut(s)	78, 115, 414, 504, 508, 729, 792, 864
CfoI	GCGC	1 cut(s)	742
Cfr10I	RCCGGY	6 cut(s)	76, 91, 104, 628, 727, 862
Cfr13I	GGNCC	2 cut(s)	393, 708
Cfr42I	CCGCGG	1 cut(s)	402
CseI	GACGC	1 cut(s)	841
DdeI	CTNAG	6 cut(s)	33, 408, 480, 498, 555, 624
DpnI	GATC	2 cut(s)	20, 257
DpnII	GATC	2 cut(s)	18, 255
EaeI	YGGCCR	5 cut(s)	78, 96, 441, 729, 783
EagI	CGGCCG	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
EciI	GGCGGA	1 cut(s)	385
EclXI	CGGCCG	1 cut(s)	78
Eco130I	CCWWGG	5 cut(s)	123, 456, 704, 717, 732
Eco47I	GGWCC	1 cut(s)	393
Eco52I	CGGCCG	1 cut(s)	78
Eco81I	CCTNAGG	1 cut(s)	480
EcoNI	CCTNNNNNAGG	1 cut(s)	483
EcoT14I	CCWWGG	5 cut(s)	123, 456, 704, 717, 732
ErhI	CCWWGG	5 cut(s)	123, 456, 704, 717, 732
Esp3I	CGTCTC	1 cut(s)	29
FaiI	YATR	2 cut(s)	192, 252
FokI	GGATG	1 cut(s)	221
FseI	GGCCGGCC	1 cut(s)	731
FspBI	CTAG	2 cut(s)	165, 390
GlaI	GCGC	1 cut(s)	741
GsuI	CTGGAG	1 cut(s)	861
HaeIII	GGCC	7 cut(s)	80, 98, 443, 709, 727, 731, 785
HgaI	GACGC	1 cut(s)	841
HhaI	GCGC	1 cut(s)	742
Hin6I	GCGC	1 cut(s)	740
HinP1I	GCGC	1 cut(s)	740
HindIII	AAGCTT	3 cut(s)	308, 332, 377
HinfI	GANTC	3 cut(s)	46, 745, 811
HphI	GGTGA	3 cut(s)	173, 250, 436
Hpy188I	TCNGA	5 cut(s)	10, 346, 750, 834, 885
Hpy188III	TCNNGA	2 cut(s)	43, 304
HpyAV	CCTTC	6 cut(s)	127, 154, 393, 574, 814, 880
HpyCH4III	ACNGT	2 cut(s)	40, 640
HpyCH4V	TGCA	5 cut(s)	539, 572, 635, 677, 794
HpyF3I	CTNAG	6 cut(s)	33, 408, 480, 498, 555, 624
HspAI	GCGC	1 cut(s)	740
KroI	GCCGGC	3 cut(s)	76, 727, 862
KroNI	GCCGGC	3 cut(s)	78, 729, 864
KspI	CCGCGG	1 cut(s)	402
Kzo9I	GATC	2 cut(s)	18, 255
LweI	GCATC	2 cut(s)	14, 199
MaeI	CTAG	2 cut(s)	165, 390
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	2 cut(s)	20, 257
MbiI	CCGCTC	1 cut(s)	152
MboI	GATC	2 cut(s)	18, 255
MlyI	GAGTC	2 cut(s)	739, 805
MmeI	TCCRAC	1 cut(s)	851
MnlI	CCTC	7 cut(s)	60, 76, 195, 303, 479, 717, 747
MreI	CGCCGGCG	1 cut(s)	862
MroNI	GCCGGC	3 cut(s)	76, 727, 862
MroXI	GAANNNNTTC	1 cut(s)	238
MseI	TTAA	1 cut(s)	204
MspA1I	CMGCKG	3 cut(s)	401, 659, 680
MspR9I	CCNGG	1 cut(s)	765
MvnI	CGCG	2 cut(s)	401, 742
NaeI	GCCGGC	3 cut(s)	78, 729, 864
NciI	CCSGG	1 cut(s)	765
NdeII	GATC	2 cut(s)	18, 255
NgoMIV	GCCGGC	3 cut(s)	76, 727, 862
NlaIV	GGNNCC	4 cut(s)	60, 129, 405, 825
NmeAIII	GCCGAG	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	217
PdiI	GCCGGC	3 cut(s)	78, 729, 864
PdmI	GAANNNNTTC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	46
PflFI	GACNNNGTC	1 cut(s)	754
PfoI	TCCNGGA	1 cut(s)	763
Ple19I	CGATCG	1 cut(s)	21
PleI	GAGTC	2 cut(s)	739, 805
PpsI	GAGTC	2 cut(s)	739, 805
PspN4I	GGNNCC	4 cut(s)	60, 129, 405, 825
PspPI	GGNCC	2 cut(s)	393, 708
PstI	CTGCAG	2 cut(s)	541, 679
PsyI	GACNNNGTC	1 cut(s)	754
PvuI	CGATCG	1 cut(s)	21
PvuII	CAGCTG	1 cut(s)	680
RgaI	GCGATCGC	1 cut(s)	21
RigI	GGCCGGCC	1 cut(s)	731
SacII	CCGCGG	1 cut(s)	402
SaqAI	TTAA	1 cut(s)	204
Sau3AI	GATC	2 cut(s)	18, 255
Sau96I	GGNCC	2 cut(s)	393, 708
SchI	GAGTC	2 cut(s)	739, 805
ScrFI	CCNGG	1 cut(s)	765
SfaAI	GCGATCGC	1 cut(s)	21
SfaNI	GCATC	2 cut(s)	14, 199
SfcI	CTRYAG	2 cut(s)	537, 675
Sfr303I	CCGCGG	1 cut(s)	402
SgfI	GCGATCGC	1 cut(s)	21
SgrAI	CRCCGGYG	1 cut(s)	862
SgrBI	CCGCGG	1 cut(s)	402
SinI	GGWCC	1 cut(s)	393
SspMI	CTAG	2 cut(s)	165, 390
StyD4I	CCNGG	1 cut(s)	763
StyI	CCWWGG	5 cut(s)	123, 456, 704, 717, 732
TaaI	ACNGT	2 cut(s)	40, 640
TaqI	TCGA	2 cut(s)	42, 242
TauI	GCSGC	9 cut(s)	26, 98, 152, 401, 404, 446, 449, 740, 785
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	444
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	3 cut(s)	207, 256, 360
TspRI	CASTG	1 cut(s)	444
Tth111I	GACNNNGTC	1 cut(s)	754
VpaK11BI	GGWCC	1 cut(s)	393
XagI	CCTNNNNNAGG	1 cut(s)	483
XmnI	GAANNNNTTC	1 cut(s)	238
XspI	CTAG	2 cut(s)	165, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.