Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8346219.1

Orthogroup ID

OG0003009

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 699

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8346219.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

aaggagaggactggttcgagccagtatgcgatcactaagttcatcgaggagaagcacaagcagctccctccaaacttcaagaagcttctgctctaccatttgaagaagctcgtcagctccgacaagctcgccaaggtcaaaagctcctataagattccgtcggttcggtccgccgcagctccacctaagcccgctgctgctccggccaagaagaagcctgccgccgcggccaagcccaaggccaaggctgctgcgaagccaaagggaaagactaagtcggtcaaggcggcgagcaagtctccggccaaggctaaggccgctgctgctaagccgaagccgaagcccaaagccaagcctgcggccaaggcaaagcctgctccggccaagaccaaggcggctgctccggccaaggccaaggctgctccggctaaggcaaaggctgctccggccaagaccaaggctgccccggctgccaagcctaaggcagcagctcccaagcccaagcttaaggagaagccagccaaggctgcgaggacgttgaccaggtcatcgcctgggaggaaggctccgacggctaggtcggccaagccagcgccgaagaaggcagcgacaccgaagaaggcacccacccgtactgtgaagccgagaagcgtcaagtcgccggctaagaaagcaccagctaggaagggaaggaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005739 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

232

Amino Acids

23.92

Weight (kDa)

11.57

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30620 AT2G30620
fragaria_vesca	FvH4_2g02381 FvH4_2g22280 FvH4_6g02630 FvH4_7g09410
malus_domestica	MD01G1078700.v1.1 MD04G1226600.v1.1 MD05G1204100.v1.1 MD10G1191200.v1.1 MD12G1243700.v1.1
prunus_persica	Prupe.6G345300_v2.0.a1 Prupe.8G230400_v2.0.a1
pyrus_communis	pycom04g19980 pycom05g19050 pycom10g16480 pycom12g22270
rosa_chinensis	RchiOBHm_Chr3g0450571 RchiOBHm_Chr6g0289241
rosa_laevigata	RLG00000012318 RLG00000025721
rosa_multiflora	Rmu_co8346219.1_g000001 Rmu_sc0000078.1_g000047 Rmu_sc0001527.1_g000013 Rmu_sc0005951.1_g000008
rosa_roxburghii	Rroxscaffold_6G00428260 Rroxscaffold_7G00179420
rosa_rugosa	Rorug02G0628700 Rorug06G0202300
rosa_samantha	Rh3AG029400 Rh3BG029800 Rh3CG028700 Rh3DG029500 Rh6BG320600 Rh6CG326700 Rh6DG312600
rosa_wichuraiana	Rw3G002260 Rw6G027060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	577
AccB1I	GGYRCC	1 cut(s)	622
AccII	CGCG	1 cut(s)	227
AcoI	YGGCCR	8 cut(s)	204, 228, 303, 360, 381, 405, 447, 582
AfaI	GTAC	1 cut(s)	634
AflII	CTTAAG	1 cut(s)	506
AgsI	TTSAA	2 cut(s)	79, 103
AjnI	CCWGG	2 cut(s)	542, 553
Alw26I	GTCTC	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	595
AspS9I	GGNCC	1 cut(s)	168
AsuC2I	CCSGG	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	168
AxyI	CCTNAGG	1 cut(s)	480
BanI	GGYRCC	1 cut(s)	622
BceAI	ACGGC	1 cut(s)	588
BciT130I	CCWGG	2 cut(s)	544, 555
BcnI	CCSGG	1 cut(s)	467
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	2 cut(s)	576, 681
BfoI	RGCGCY	1 cut(s)	596
BfrI	CTTAAG	1 cut(s)	506
BglI	GCCNNNNNGGC	1 cut(s)	227
BlpI	GCTNAGC	1 cut(s)	327
Bme1390I	CCNGG	3 cut(s)	467, 544, 555
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	2 cut(s)	567, 624
BmrFI	CCNGG	3 cut(s)	467, 544, 555
BplI	GAGNNNNNCTC	4 cut(s)	283, 315, 550, 582
Bpu10I	CCTNAGC	3 cut(s)	186, 312, 429
Bpu1102I	GCTNAGC	1 cut(s)	327
BpuMI	CCSGG	1 cut(s)	467
Bse118I	RCCGGY	1 cut(s)	661
Bse1I	ACTGG	2 cut(s)	16, 22
Bse21I	CCTNAGG	1 cut(s)	480
BseBI	CCWGG	2 cut(s)	544, 555
BseNI	ACTGG	2 cut(s)	16, 22
BseRI	GAGGAG	1 cut(s)	62
Bsh1236I	CGCG	1 cut(s)	227
BshNI	GGYRCC	1 cut(s)	622
BsiSI	CCGG	8 cut(s)	203, 302, 380, 404, 425, 446, 467, 662
BsmAI	GTCTC	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	30
Bsp1720I	GCTNAGC	1 cut(s)	327
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	2 cut(s)	567, 624
BspT107I	GGYRCC	1 cut(s)	622
BspTI	CTTAAG	1 cut(s)	506
BsrFI	RCCGGY	1 cut(s)	661
BsrI	ACTGG	2 cut(s)	16, 22
BssAI	RCCGGY	1 cut(s)	661
BssMI	GATC	1 cut(s)	30
Bst2UI	CCWGG	2 cut(s)	544, 555
Bst4CI	ACNGT	1 cut(s)	637
BstAFI	CTTAAG	1 cut(s)	506
BstAPI	GCANNNNNTGC	2 cut(s)	374, 440
BstC8I	GCNNGC	9 cut(s)	129, 192, 219, 292, 357, 375, 519, 591, 663
BstDEI	CTNAG	8 cut(s)	36, 186, 273, 312, 327, 429, 480, 666
BstDSI	CCRYGG	1 cut(s)	225
BstFNI	CGCG	1 cut(s)	227
BstH2I	RGCGCY	1 cut(s)	596
BstHHI	GCGC	1 cut(s)	595
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	1 cut(s)	30
BstNI	CCWGG	2 cut(s)	544, 555
BstSCI	CCNGG	3 cut(s)	465, 542, 553
BstUI	CGCG	1 cut(s)	227
Bsu36I	CCTNAGG	1 cut(s)	480
BtgI	CCRYGG	1 cut(s)	225
BtgZI	GCGATG	1 cut(s)	534
Cac8I	GCNNGC	9 cut(s)	129, 192, 219, 292, 357, 375, 519, 591, 663
CfoI	GCGC	1 cut(s)	595
Cfr10I	RCCGGY	1 cut(s)	661
Cfr13I	GGNCC	1 cut(s)	168
Cfr42I	CCGCGG	1 cut(s)	228
CpoI	CGGWCCG	1 cut(s)	168
CseI	GACGC	1 cut(s)	640
CsiI	ACCWGGT	1 cut(s)	542
Csp6I	GTAC	1 cut(s)	633
CspI	CGGWCCG	1 cut(s)	168
CviQI	GTAC	1 cut(s)	633
DdeI	CTNAG	8 cut(s)	36, 186, 273, 312, 327, 429, 480, 666
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
DrdI	GACNNNNNNGTC	1 cut(s)	577
DseDI	GACNNNNNNGTC	1 cut(s)	577
EaeI	YGGCCR	8 cut(s)	204, 228, 303, 360, 381, 405, 447, 582
EciI	GGCGGA	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	168
Eco81I	CCTNAGG	1 cut(s)	480
EcoRII	CCWGG	2 cut(s)	542, 553
FaiI	YATR	2 cut(s)	27, 150
FauI	CCCGC	1 cut(s)	199
FspBI	CTAG	2 cut(s)	576, 681
GlaI	GCGC	1 cut(s)	594
HaeII	RGCGCY	1 cut(s)	596
HapII	CCGG	8 cut(s)	203, 302, 380, 404, 425, 446, 467, 662
HgaI	GACGC	1 cut(s)	640
HhaI	GCGC	1 cut(s)	595
Hin6I	GCGC	1 cut(s)	593
HinP1I	GCGC	1 cut(s)	593
HincII	GTYRAC	1 cut(s)	540
HindII	GTYRAC	1 cut(s)	540
HindIII	AAGCTT	2 cut(s)	83, 503
HinfI	GANTC	1 cut(s)	154
HpaII	CCGG	8 cut(s)	203, 302, 380, 404, 425, 446, 467, 662
Hpy166II	GTNNAC	1 cut(s)	540
Hpy188I	TCNGA	2 cut(s)	121, 570
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	1 cut(s)	540
Hpy99I	CGWCG	2 cut(s)	163, 574
HpyAV	CCTTC	5 cut(s)	556, 595, 613, 679, 684
HpyCH4III	ACNGT	1 cut(s)	637
HpyCH4IV	ACGT	1 cut(s)	536
HpyF3I	CTNAG	8 cut(s)	36, 186, 273, 312, 327, 429, 480, 666
HpySE526I	ACGT	1 cut(s)	536
HspAI	GCGC	1 cut(s)	593
KroI	GCCGGC	1 cut(s)	661
KroNI	GCCGGC	1 cut(s)	663
KspI	CCGCGG	1 cut(s)	228
Kzo9I	GATC	1 cut(s)	30
MabI	ACCWGGT	1 cut(s)	542
MaeI	CTAG	2 cut(s)	576, 681
MaeII	ACGT	1 cut(s)	536
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	4 cut(s)	115, 223, 610, 628
MmeI	TCCRAC	2 cut(s)	144, 593
MnlI	CCTC	4 cut(s)	40, 78, 525, 552
MroNI	GCCGGC	1 cut(s)	661
MseI	TTAA	1 cut(s)	507
MspA1I	CMGCKG	3 cut(s)	194, 227, 320
MspCI	CTTAAG	1 cut(s)	506
MspI	CCGG	8 cut(s)	203, 302, 380, 404, 425, 446, 467, 662
MspR9I	CCNGG	3 cut(s)	467, 544, 555
MvaI	CCWGG	2 cut(s)	544, 555
MvnI	CGCG	1 cut(s)	227
NaeI	GCCGGC	1 cut(s)	663
NciI	CCSGG	1 cut(s)	467
NdeII	GATC	1 cut(s)	30
NgoMIV	GCCGGC	1 cut(s)	661
NlaIV	GGNNCC	2 cut(s)	567, 624
NmeAIII	GCCGAG	1 cut(s)	669
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PdiI	GCCGGC	1 cut(s)	663
PfeI	GAWTC	1 cut(s)	154
PflFI	GACNNNGTC	2 cut(s)	274, 544
Psp6I	CCWGG	2 cut(s)	542, 553
PspGI	CCWGG	2 cut(s)	542, 553
PspN4I	GGNNCC	2 cut(s)	567, 624
PspPI	GGNCC	1 cut(s)	168
PsyI	GACNNNGTC	2 cut(s)	274, 544
RsaI	GTAC	1 cut(s)	634
RsaNI	GTAC	1 cut(s)	633
Rsr2I	CGGWCCG	1 cut(s)	168
RsrII	CGGWCCG	1 cut(s)	168
SacII	CCGCGG	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	507
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	1 cut(s)	168
ScrFI	CCNGG	3 cut(s)	467, 544, 555
SexAI	ACCWGGT	1 cut(s)	542
Sfr303I	CCGCGG	1 cut(s)	228
SgrBI	CCGCGG	1 cut(s)	228
SinI	GGWCC	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
SspMI	CTAG	2 cut(s)	576, 681
StyD4I	CCNGG	3 cut(s)	465, 542, 553
TaaI	ACNGT	1 cut(s)	637
TaiI	ACGT	1 cut(s)	539
TaqI	TCGA	2 cut(s)	17, 45
TaqII	GACCGA	2 cut(s)	156, 268
TauI	GCSGC	8 cut(s)	176, 224, 227, 230, 290, 320, 362, 398
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TspDTI	ATGAA	1 cut(s)	31
TspGWI	ACGGA	1 cut(s)	147
Tth111I	GACNNNGTC	2 cut(s)	274, 544
Vha464I	CTTAAG	1 cut(s)	506
VpaK11BI	GGWCC	1 cut(s)	168
XspI	CTAG	2 cut(s)	576, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.