Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003009

Physical Location & Seq

Genomic Coordinates Reverse (-)

19692411 .. 19693183

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGATCAAATTAATTGAGCACAAAAGCACACCCAAACCAAGAATGAACACCTCATTTTCCAAACCCAGCCATCTACACCTCTCCCACCCAGAGCATCCACAACCGTCCACAACGGTTCATCCAAAGGCCCACATTCAAATTTCCGAAAGGCAGCGATCCTCGTGCTGGTCCTGTCGACCAATCAGCGCCCAGCTTTCGGATATCGTCCCTCAGGCACTTGACTATTTAAAGAGTCCAATTTCCGTCATCTTCTCACACAACGAAATTACCTGTGAATTCACACACACGTACATTGCCGGTCGATCCAGATCTCCCTCCCCTCTTTCAAATTCCAGTCCTCTTCCCTTTCCCCTTTATTTCCAAACCCTAGCCCTAAAATTCGAATTGTTCATGGCGACCGAAGAAGCCGCCGTGGTCGTCGTGACCGAGACGATCGAGAATCCTCCTCCCGAGCCGGCCACCACCGAGACGGCGGCCGACAAACCGGTGGCCAAGACCGGCAAGGCCAAGGAGCCCAAGGCGAAGAAGGCGCCCGCTCCGAGGAAGCCCAGAAGCGCTCCAGCTCATCCTCCGTACGAAGAGATGGTTAAGGACGCGATTGTGACGTTGAAGGAGAGGACTGGTTCGAGCCAGTACGCGATCGATCTTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005739 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

218

Amino Acids

24.07

Weight (kDa)

9.07

Isoelectric Point (pI)

63.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30620 AT2G30620
fragaria_vesca	FvH4_2g02381 FvH4_2g22280 FvH4_6g02630 FvH4_7g09410
malus_domestica	MD01G1078700.v1.1 MD04G1226600.v1.1 MD05G1204100.v1.1 MD10G1191200.v1.1 MD12G1243700.v1.1
prunus_persica	Prupe.6G345300_v2.0.a1 Prupe.8G230400_v2.0.a1
pyrus_communis	pycom04g19980 pycom05g19050 pycom10g16480 pycom12g22270
rosa_chinensis	RchiOBHm_Chr3g0450571 RchiOBHm_Chr6g0289241
rosa_laevigata	RLG00000012318 RLG00000025721
rosa_multiflora	Rmu_co8346219.1_g000001 Rmu_sc0000078.1_g000047 Rmu_sc0001527.1_g000013 Rmu_sc0005951.1_g000008
rosa_roxburghii	Rroxscaffold_6G00428260 Rroxscaffold_7G00179420
rosa_rugosa	Rorug02G0628700 Rorug06G0202300
rosa_samantha	Rh3AG029400 Rh3BG029800 Rh3CG028700 Rh3DG029500 Rh6BG320600 Rh6CG326700 Rh6DG312600
rosa_wichuraiana	Rw3G002260 Rw6G027060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	529
AccBSI	CCGCTC	1 cut(s)	536
AccI	GTMKAC	1 cut(s)	175
AccII	CGCG	2 cut(s)	596, 638
AciI	CCGC	3 cut(s)	408, 473, 534
AclWI	GGATC	2 cut(s)	150, 297
AcoI	YGGCCR	3 cut(s)	456, 474, 489
AcsI	RAATTY	4 cut(s)	138, 275, 328, 377
AcyI	GRCGYC	1 cut(s)	530
AfaI	GTAC	3 cut(s)	290, 575, 635
AfeI	AGCGCT	1 cut(s)	556
AfiI	CCNNNNNNNGG	3 cut(s)	165, 196, 540
AflIII	ACRYGT	1 cut(s)	285
AgeI	ACCGGT	1 cut(s)	484
AgsI	TTSAA	3 cut(s)	137, 327, 610
AluBI	AGCT	2 cut(s)	193, 563
AluI	AGCT	2 cut(s)	193, 563
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	2 cut(s)	422, 461
AlwI	GGATC	2 cut(s)	150, 297
Ama87I	CYCGRG	1 cut(s)	449
Aor51HI	AGCGCT	1 cut(s)	556
AoxI	GGCC	5 cut(s)	126, 456, 474, 489, 504
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	4 cut(s)	138, 275, 328, 377
AseI	ATTAAT	1 cut(s)	11
AsiGI	ACCGGT	1 cut(s)	484
AspLEI	GCGC	3 cut(s)	188, 532, 557
AspS9I	GGNCC	2 cut(s)	127, 168
AsuII	TTCGAA	1 cut(s)	381
AvaI	CYCGRG	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	168
AxyI	CCTNAGG	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	491
BanI	GGYRCC	1 cut(s)	529
BanII	GRGCYC	1 cut(s)	516
BauI	CACGAG	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	2 cut(s)	78, 577
BceAI	ACGGC	2 cut(s)	395, 486
BcgI	CGANNNNNNTGC	2 cut(s)	144, 178
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	422, 461
BfaI	CTAG	1 cut(s)	368
BfoI	RGCGCY	3 cut(s)	189, 533, 558
BglII	AGATCT	1 cut(s)	308
BisI	GCNGC	3 cut(s)	152, 408, 474
BlsI	GCNGC	3 cut(s)	153, 409, 475
Bme18I	GGWCC	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	449
BmgT120I	GGNCC	2 cut(s)	127, 168
BmiI	GGNNCC	2 cut(s)	513, 531
BmsI	GCATC	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	543
Bpu14I	TTCGAA	1 cut(s)	381
Bsa29I	ATCGAT	1 cut(s)	642
BsaAI	YACGTR	1 cut(s)	288
BsaBI	GATNNNNATC	1 cut(s)	307
BsaHI	GRCGYC	1 cut(s)	530
BsaJI	CCNNGG	4 cut(s)	411, 507, 516, 539
BsaWI	WCCGGW	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 196, 540
Bse118I	RCCGGY	4 cut(s)	296, 454, 484, 497
Bse1I	ACTGG	3 cut(s)	333, 625, 631
Bse21I	CCTNAGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	291
Bse8I	GATNNNNATC	1 cut(s)	307
BseCI	ATCGAT	1 cut(s)	642
BseDI	CCNNGG	4 cut(s)	411, 507, 516, 539
BseGI	GGATG	3 cut(s)	94, 118, 565
BseJI	GATNNNNATC	1 cut(s)	307
BseLI	CCNNNNNNNGG	3 cut(s)	165, 196, 540
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	3 cut(s)	333, 625, 631
BseRI	GAGGAG	1 cut(s)	435
BseX3I	CGGCCG	1 cut(s)	474
BseXI	GCAGC	1 cut(s)	163
BseYI	CCCAGC	2 cut(s)	65, 189
Bsh1236I	CGCG	2 cut(s)	596, 638
Bsh1285I	CGRYCG	5 cut(s)	301, 399, 435, 477, 642
BshFI	GGCC	5 cut(s)	128, 458, 476, 491, 506
BshNI	GGYRCC	1 cut(s)	529
BshTI	ACCGGT	1 cut(s)	484
BshVI	ATCGAT	1 cut(s)	642
BsiEI	CGRYCG	5 cut(s)	301, 399, 435, 477, 642
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	449
BsiSI	CCGG	4 cut(s)	297, 455, 485, 498
BsiWI	CGTACG	1 cut(s)	573
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	3 cut(s)	165, 196, 540
BsmAI	GTCTC	2 cut(s)	422, 461
BsmBI	CGTCTC	2 cut(s)	422, 461
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	5 cut(s)	128, 458, 476, 491, 506
BsoBI	CYCGRG	1 cut(s)	449
Bsp119I	TTCGAA	1 cut(s)	381
Bsp1286I	GDGCHC	2 cut(s)	21, 516
Bsp143I	GATC	7 cut(s)	3, 155, 302, 308, 432, 639, 643
BspACI	CCGC	3 cut(s)	408, 473, 534
BspANI	GGCC	5 cut(s)	128, 458, 476, 491, 506
BspCNI	CTCAG	1 cut(s)	223
BspDI	ATCGAT	1 cut(s)	642
BspFNI	CGCG	2 cut(s)	596, 638
BspLI	GGNNCC	2 cut(s)	513, 531
BspPI	GGATC	2 cut(s)	150, 297
BspT104I	TTCGAA	1 cut(s)	381
BspT107I	GGYRCC	1 cut(s)	529
BsrBI	CCGCTC	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	291
BsrFI	RCCGGY	4 cut(s)	296, 454, 484, 497
BsrI	ACTGG	3 cut(s)	333, 625, 631
BssAI	RCCGGY	4 cut(s)	296, 454, 484, 497
BssECI	CCNNGG	4 cut(s)	411, 507, 516, 539
BssMI	GATC	7 cut(s)	3, 155, 302, 308, 432, 639, 643
BssNI	GRCGYC	1 cut(s)	530
BssSI	CACGAG	1 cut(s)	160
BssT1I	CCWWGG	2 cut(s)	507, 516
Bst2BI	CACGAG	1 cut(s)	160
Bst4CI	ACNGT	2 cut(s)	105, 115
Bst6I	CTCTTC	2 cut(s)	345, 573
BstACI	GRCGYC	1 cut(s)	530
BstBAI	YACGTR	1 cut(s)	288
BstBI	TTCGAA	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	456, 534
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	411
BstF5I	GGATG	3 cut(s)	94, 118, 565
BstFNI	CGCG	2 cut(s)	596, 638
BstH2I	RGCGCY	3 cut(s)	189, 533, 558
BstHHI	GCGC	3 cut(s)	188, 532, 557
BstKTI	GATC	7 cut(s)	6, 158, 305, 311, 435, 642, 646
BstMAI	GTCTC	2 cut(s)	422, 461
BstMBI	GATC	7 cut(s)	3, 155, 302, 308, 432, 639, 643
BstMCI	CGRYCG	5 cut(s)	301, 399, 435, 477, 642
BstMWI	GCNNNNNNNGC	1 cut(s)	527
BstUI	CGCG	2 cut(s)	596, 638
BstV1I	GCAGC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
BstZI	CGGCCG	1 cut(s)	474
Bsu15I	ATCGAT	1 cut(s)	642
Bsu36I	CCTNAGG	1 cut(s)	210
BsuRI	GGCC	5 cut(s)	128, 458, 476, 491, 506
BsuTUI	ATCGAT	1 cut(s)	642
BtgI	CCRYGG	1 cut(s)	411
BtsCI	GGATG	3 cut(s)	94, 118, 565
Cac8I	GCNNGC	2 cut(s)	456, 534
CfoI	GCGC	3 cut(s)	188, 532, 557
Cfr10I	RCCGGY	4 cut(s)	296, 454, 484, 497
Cfr13I	GGNCC	2 cut(s)	127, 168
ClaI	ATCGAT	1 cut(s)	642
CseI	GACGC	1 cut(s)	602
Csp6I	GTAC	3 cut(s)	289, 574, 634
CspAI	ACCGGT	1 cut(s)	484
CviAII	CATG	1 cut(s)	391
CviQI	GTAC	3 cut(s)	289, 574, 634
DdeI	CTNAG	1 cut(s)	210
DinI	GGCGCC	1 cut(s)	531
DpnI	GATC	7 cut(s)	5, 157, 304, 310, 434, 641, 645
DpnII	GATC	7 cut(s)	3, 155, 302, 308, 432, 639, 643
DraI	TTTAAA	1 cut(s)	228
EaeI	YGGCCR	3 cut(s)	456, 474, 489
EagI	CGGCCG	1 cut(s)	474
Eam1104I	CTCTTC	2 cut(s)	345, 573
EarI	CTCTTC	2 cut(s)	345, 573
EclXI	CGGCCG	1 cut(s)	474
Eco130I	CCWWGG	2 cut(s)	507, 516
Eco24I	GRGCYC	1 cut(s)	516
Eco32I	GATATC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	168
Eco47III	AGCGCT	1 cut(s)	556
Eco52I	CGGCCG	1 cut(s)	474
Eco81I	CCTNAGG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	449
EcoRI	GAATTC	1 cut(s)	275
EcoRV	GATATC	1 cut(s)	202
EcoT14I	CCWWGG	2 cut(s)	507, 516
EcoT38I	GRGCYC	1 cut(s)	516
EgeI	GGCGCC	1 cut(s)	531
EheI	GGCGCC	1 cut(s)	531
ErhI	CCWWGG	2 cut(s)	507, 516
Esp3I	CGTCTC	2 cut(s)	422, 461
FaeI	CATG	1 cut(s)	394
FaiI	YATR	1 cut(s)	392
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	1 cut(s)	390
FauI	CCCGC	1 cut(s)	541
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	175
Fnu4HI	GCNGC	3 cut(s)	152, 408, 474
FokI	GGATG	3 cut(s)	81, 105, 552
FriOI	GRGCYC	1 cut(s)	516
Fsp4HI	GCNGC	3 cut(s)	152, 408, 474
FspBI	CTAG	1 cut(s)	368
GlaI	GCGC	3 cut(s)	187, 531, 556
GluI	GCNGC	3 cut(s)	152, 408, 474
GsaI	CCCAGC	2 cut(s)	69, 193
GsuI	CTGGAG	1 cut(s)	543
HaeII	RGCGCY	3 cut(s)	189, 533, 558
HaeIII	GGCC	5 cut(s)	128, 458, 476, 491, 506
HapII	CCGG	4 cut(s)	297, 455, 485, 498
HgaI	GACGC	1 cut(s)	602
HhaI	GCGC	3 cut(s)	188, 532, 557
Hin1I	GRCGYC	1 cut(s)	530
Hin1II	CATG	1 cut(s)	394
Hin6I	GCGC	3 cut(s)	186, 530, 555
HinP1I	GCGC	3 cut(s)	186, 530, 555
HincII	GTYRAC	1 cut(s)	176
HindII	GTYRAC	1 cut(s)	176
HinfI	GANTC	2 cut(s)	232, 439
HpaII	CCGG	4 cut(s)	297, 455, 485, 498
Hpy166II	GTNNAC	2 cut(s)	108, 176
Hpy188I	TCNGA	3 cut(s)	145, 199, 540
Hpy188III	TCNNGA	4 cut(s)	306, 421, 436, 449
Hpy8I	GTNNAC	2 cut(s)	108, 176
Hpy99I	CGWCG	1 cut(s)	422
HpyAV	CCTTC	2 cut(s)	520, 604
HpyCH4III	ACNGT	2 cut(s)	105, 115
HpyCH4IV	ACGT	2 cut(s)	287, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	527
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	2 cut(s)	287, 605
Hsp92I	GRCGYC	1 cut(s)	530
Hsp92II	CATG	1 cut(s)	394
HspAI	GCGC	3 cut(s)	186, 530, 555
KasI	GGCGCC	1 cut(s)	529
KroI	GCCGGC	1 cut(s)	454
KroNI	GCCGGC	1 cut(s)	456
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	7 cut(s)	3, 155, 302, 308, 432, 639, 643
LmnI	GCTCC	3 cut(s)	511, 541, 562
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	2 cut(s)	287, 605
MaeIII	GTNAC	2 cut(s)	421, 601
MalI	GATC	7 cut(s)	5, 157, 304, 310, 434, 641, 645
MbiI	CCGCTC	1 cut(s)	536
MboI	GATC	7 cut(s)	3, 155, 302, 308, 432, 639, 643
MboII	GAAGA	5 cut(s)	241, 332, 413, 535, 590
MflI	RGATCY	1 cut(s)	308
MhlI	GDGCHC	2 cut(s)	21, 516
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	9 cut(s)	8, 12, 138, 237, 264, 275, 328, 377, 383
MluNI	TGGCCA	1 cut(s)	491
Mly113I	GGCGCC	1 cut(s)	530
MlyI	GAGTC	1 cut(s)	241
Mox20I	TGGCCA	1 cut(s)	491
MroNI	GCCGGC	1 cut(s)	454
MscI	TGGCCA	1 cut(s)	491
MseI	TTAA	3 cut(s)	11, 227, 588
Msp20I	TGGCCA	1 cut(s)	491
MspI	CCGG	4 cut(s)	297, 455, 485, 498
MvnI	CGCG	2 cut(s)	596, 638
MwoI	GCNNNNNNNGC	1 cut(s)	527
NaeI	GCCGGC	1 cut(s)	456
NarI	GGCGCC	1 cut(s)	530
NdeII	GATC	7 cut(s)	3, 155, 302, 308, 432, 639, 643
NgoMIV	GCCGGC	1 cut(s)	454
NlaIII	CATG	1 cut(s)	394
NlaIV	GGNNCC	2 cut(s)	513, 531
NmuCI	GTSAC	2 cut(s)	421, 601
NspV	TTCGAA	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	1 cut(s)	423
PdiI	GCCGGC	1 cut(s)	456
PfeI	GAWTC	1 cut(s)	439
Pfl23II	CGTACG	1 cut(s)	573
PinAI	ACCGGT	1 cut(s)	484
PkrI	GCNGC	3 cut(s)	153, 409, 475
Ple19I	CGATCG	2 cut(s)	435, 642
PleI	GAGTC	1 cut(s)	240
PluTI	GGCGCC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	240
Ppu21I	YACGTR	1 cut(s)	288
PshBI	ATTAAT	1 cut(s)	11
PspFI	CCCAGC	2 cut(s)	65, 189
PspLI	CGTACG	1 cut(s)	573
PspN4I	GGNNCC	2 cut(s)	513, 531
PspPI	GGNCC	2 cut(s)	127, 168
PsuI	RGATCY	1 cut(s)	308
PvuI	CGATCG	2 cut(s)	435, 642
RsaI	GTAC	3 cut(s)	290, 575, 635
RsaNI	GTAC	3 cut(s)	289, 574, 634
SalI	GTCGAC	1 cut(s)	174
SaqAI	TTAA	3 cut(s)	11, 227, 588
SatI	GCNGC	3 cut(s)	152, 408, 474
Sau3AI	GATC	7 cut(s)	3, 155, 302, 308, 432, 639, 643
Sau96I	GGNCC	2 cut(s)	127, 168
SchI	GAGTC	1 cut(s)	241
SduI	GDGCHC	2 cut(s)	21, 516
SetI	ASST	7 cut(s)	53, 81, 195, 272, 290, 565, 608
SfaNI	GCATC	1 cut(s)	103
SfoI	GGCGCC	1 cut(s)	531
SfuI	TTCGAA	1 cut(s)	381
SinI	GGWCC	1 cut(s)	168
Sse9I	AATT	9 cut(s)	8, 12, 138, 237, 264, 275, 328, 377, 383
SsiI	CCGC	3 cut(s)	408, 473, 534
SspDI	GGCGCC	1 cut(s)	529
SspMI	CTAG	1 cut(s)	368
StyI	CCWWGG	2 cut(s)	507, 516
TaaI	ACNGT	2 cut(s)	105, 115
TaiI	ACGT	2 cut(s)	290, 608
TaqI	TCGA	6 cut(s)	175, 301, 381, 435, 626, 642
TaqII	GACCGA	2 cut(s)	413, 440
TasI	AATT	9 cut(s)	8, 12, 138, 237, 264, 275, 328, 377, 383
TauI	GCSGC	2 cut(s)	410, 476
TfiI	GAWTC	1 cut(s)	439
Tru1I	TTAA	3 cut(s)	11, 227, 588
Tru9I	TTAA	3 cut(s)	11, 227, 588
TseFI	GTSAC	2 cut(s)	421, 601
TseI	GCWGC	1 cut(s)	151
Tsp45I	GTSAC	2 cut(s)	421, 601
TspDTI	ATGAA	3 cut(s)	59, 107, 379
TspGWI	ACGGA	2 cut(s)	232, 561
VpaK11BI	GGWCC	1 cut(s)	168
VspI	ATTAAT	1 cut(s)	11
XapI	RAATTY	4 cut(s)	138, 275, 328, 377
XmiI	GTMKAC	1 cut(s)	175
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.