Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003009

Physical Location & Seq

Genomic Coordinates Forward (+)

31435938 .. 31437194

Gene Structure 1257 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1243700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGACTGGAACTGTCGTCTCCACCGCCAAGGCCAAGAAGGCGAGATCGCCGCCCGCTCACCCGCCGTTTGTCGAGATGATCACGGCGGCGATTGTGTCGTTGAAGGAGAGGACCGGGTCGAGCCAGTATGCGATCACCAAGTTCGTGGAGGAGAAGCACAAGAATCTACCGCCGACCTTCAAGAAGCTTCTGCTCAACCATTTGAAGAAGCTCGTGGCTGCTGGAAAGCTCGTCAAGGTGAAGAACTCGTTCAAGTTACCTTCCGTTCGCTCCGCTGCTCCGGCGAAAGAGAAGGCAGTGGCCGCGGCGCCGAAGCCTAAGAAGTCGGCCGCGGTGGTCGCTAAGCCGAAGTCCAAAACGGCTGCGAAGCCCAAGGCGAAGGTCGCGGCCAAGCCAAAGGCGAAAGCGGTAGCTTCTAAGCCCAAGCCGGCGGCTGCGAAGCCAAAGGTGAAGGCGATTGCTGCCTTGCCCAAACCTGCTGCCAAGGCGGCGAGAACATCGACAAGGACGTCGCCGGGGAAGAAGGCCGAGGTGAAGTCCAAGGCGAAGGCGAAGAAGCCAGTGGCTCCGGCGAGGGCTGTGAGGAAGCCGAAGAGTGTGAAGTCGCCGGTGAAGAGGAAGGCTCCGGCGAGGAAGGCGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005739 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

216

Amino Acids

22.53

Weight (kDa)

11.56

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	20 - 86	6.4e-19	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30620 AT2G30620
fragaria_vesca	FvH4_2g02381 FvH4_2g22280 FvH4_6g02630 FvH4_7g09410
malus_domestica	MD01G1078700.v1.1 MD04G1226600.v1.1 MD05G1204100.v1.1 MD10G1191200.v1.1 MD12G1243700.v1.1
prunus_persica	Prupe.6G345300_v2.0.a1 Prupe.8G230400_v2.0.a1
pyrus_communis	pycom04g19980 pycom05g19050 pycom10g16480 pycom12g22270
rosa_chinensis	RchiOBHm_Chr3g0450571 RchiOBHm_Chr6g0289241
rosa_laevigata	RLG00000012318 RLG00000025721
rosa_multiflora	Rmu_co8346219.1_g000001 Rmu_sc0000078.1_g000047 Rmu_sc0001527.1_g000013 Rmu_sc0005951.1_g000008
rosa_roxburghii	Rroxscaffold_6G00428260 Rroxscaffold_7G00179420
rosa_rugosa	Rorug02G0628700 Rorug06G0202300
rosa_samantha	Rh3AG029400 Rh3BG029800 Rh3CG028700 Rh3DG029500 Rh6BG320600 Rh6CG326700 Rh6DG312600
rosa_wichuraiana	Rw3G002260 Rw6G027060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	508
AatII	GACGTC	1 cut(s)	512
Acc36I	ACCTGC	1 cut(s)	484
AccB1I	GGYRCC	1 cut(s)	307
AccBSI	CCGCTC	1 cut(s)	56
AccII	CGCG	3 cut(s)	305, 332, 386
AcoI	YGGCCR	3 cut(s)	300, 327, 387
AcyI	GRCGYC	2 cut(s)	308, 509
AgsI	TTSAA	4 cut(s)	103, 181, 205, 253
AluBI	AGCT	4 cut(s)	187, 211, 229, 413
AluI	AGCT	4 cut(s)	187, 211, 229, 413
Alw26I	GTCTC	1 cut(s)	22
AoxI	GGCC	5 cut(s)	30, 300, 327, 387, 525
ApeKI	GCWGC	6 cut(s)	218, 275, 362, 434, 461, 479
Asp700I	GAANNNNTTC	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	111
AsuC2I	CCSGG	2 cut(s)	115, 516
AsuHPI	GGTGA	6 cut(s)	50, 127, 250, 460, 544, 622
AvaII	GGWCC	1 cut(s)	111
BanI	GGYRCC	1 cut(s)	307
BauI	CACGAG	1 cut(s)	212
BbvI	GCAGC	6 cut(s)	205, 262, 349, 421, 448, 466
BceAI	ACGGC	3 cut(s)	49, 99, 375
BclI	TGATCA	1 cut(s)	78
BcnI	CCSGG	2 cut(s)	115, 516
BcoDI	GTCTC	1 cut(s)	22
BfoI	RGCGCY	1 cut(s)	311
BfuAI	ACCTGC	1 cut(s)	484
BglI	GCCNNNNNGGC	2 cut(s)	38, 488
BlpI	GCTNAGC	1 cut(s)	342
Bme1390I	CCNGG	2 cut(s)	115, 516
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	3 cut(s)	309, 567, 624
BmrFI	CCNGG	2 cut(s)	115, 516
BplI	GAGNNNNNCTC	2 cut(s)	607, 639
Bpu1102I	GCTNAGC	1 cut(s)	342
BpuMI	CCSGG	2 cut(s)	115, 516
BsaHI	GRCGYC	2 cut(s)	308, 509
BsaJI	CCNNGG	8 cut(s)	27, 303, 330, 372, 483, 515, 528, 540
Bse118I	RCCGGY	2 cut(s)	427, 607
Bse1I	ACTGG	3 cut(s)	10, 124, 560
BseDI	CCNNGG	8 cut(s)	27, 303, 330, 372, 483, 515, 528, 540
BseNI	ACTGG	3 cut(s)	10, 124, 560
BseRI	GAGGAG	1 cut(s)	164
BseX3I	CGGCCG	1 cut(s)	327
BseXI	GCAGC	6 cut(s)	205, 262, 349, 421, 448, 466
Bsh1236I	CGCG	3 cut(s)	305, 332, 386
Bsh1285I	CGRYCG	1 cut(s)	330
BshFI	GGCC	5 cut(s)	32, 302, 329, 389, 527
BshNI	GGYRCC	1 cut(s)	307
BsiEI	CGRYCG	1 cut(s)	330
BsiSI	CCGG	7 cut(s)	114, 281, 428, 515, 569, 608, 626
BsmAI	GTCTC	1 cut(s)	22
BsmBI	CGTCTC	1 cut(s)	22
BsnI	GGCC	5 cut(s)	32, 302, 329, 389, 527
Bsp143I	GATC	3 cut(s)	44, 78, 132
Bsp1720I	GCTNAGC	1 cut(s)	342
BspANI	GGCC	5 cut(s)	32, 302, 329, 389, 527
BspFNI	CGCG	3 cut(s)	305, 332, 386
BspLI	GGNNCC	3 cut(s)	309, 567, 624
BspMI	ACCTGC	1 cut(s)	484
BspT107I	GGYRCC	1 cut(s)	307
BsrBI	CCGCTC	1 cut(s)	56
BsrFI	RCCGGY	2 cut(s)	427, 607
BsrI	ACTGG	3 cut(s)	10, 124, 560
BssAI	RCCGGY	2 cut(s)	427, 607
BssECI	CCNNGG	8 cut(s)	27, 303, 330, 372, 483, 515, 528, 540
BssMI	GATC	3 cut(s)	44, 78, 132
BssNI	GRCGYC	2 cut(s)	308, 509
BssSI	CACGAG	1 cut(s)	212
BssT1I	CCWWGG	4 cut(s)	27, 372, 483, 540
Bst2BI	CACGAG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	2 cut(s)	587, 608
BstACI	GRCGYC	2 cut(s)	308, 509
BstC8I	GCNNGC	2 cut(s)	54, 429
BstDEI	CTNAG	3 cut(s)	318, 342, 417
BstDSI	CCRYGG	2 cut(s)	303, 330
BstFNI	CGCG	3 cut(s)	305, 332, 386
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	3 cut(s)	47, 81, 135
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	3 cut(s)	44, 78, 132
BstMCI	CGRYCG	1 cut(s)	330
BstMWI	GCNNNNNNNGC	9 cut(s)	38, 281, 302, 338, 383, 461, 485, 488, 635
BstSCI	CCNGG	2 cut(s)	113, 514
BstUI	CGCG	3 cut(s)	305, 332, 386
BstV1I	GCAGC	6 cut(s)	205, 262, 349, 421, 448, 466
BstXI	CCANNNNNNTGG	1 cut(s)	145
BstZI	CGGCCG	1 cut(s)	327
BsuRI	GGCC	5 cut(s)	32, 302, 329, 389, 527
BtgI	CCRYGG	2 cut(s)	303, 330
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	2 cut(s)	303, 567
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	2 cut(s)	54, 429
CfoI	GCGC	1 cut(s)	310
Cfr10I	RCCGGY	2 cut(s)	427, 607
Cfr13I	GGNCC	1 cut(s)	111
Cfr42I	CCGCGG	2 cut(s)	306, 333
DdeI	CTNAG	3 cut(s)	318, 342, 417
DinI	GGCGCC	1 cut(s)	309
DpnI	GATC	3 cut(s)	46, 80, 134
DpnII	GATC	3 cut(s)	44, 78, 132
DrdI	GACNNNNNNGTC	1 cut(s)	508
DseDI	GACNNNNNNGTC	1 cut(s)	508
EaeI	YGGCCR	3 cut(s)	300, 327, 387
EagI	CGGCCG	1 cut(s)	327
Eam1104I	CTCTTC	2 cut(s)	587, 608
EarI	CTCTTC	2 cut(s)	587, 608
EclXI	CGGCCG	1 cut(s)	327
Eco130I	CCWWGG	4 cut(s)	27, 372, 483, 540
Eco47I	GGWCC	1 cut(s)	111
Eco52I	CGGCCG	1 cut(s)	327
EcoT14I	CCWWGG	4 cut(s)	27, 372, 483, 540
EgeI	GGCGCC	1 cut(s)	309
EheI	GGCGCC	1 cut(s)	309
ErhI	CCWWGG	4 cut(s)	27, 372, 483, 540
Esp3I	CGTCTC	1 cut(s)	22
FaiI	YATR	1 cut(s)	129
FauI	CCCGC	2 cut(s)	61, 69
FbaI	TGATCA	1 cut(s)	78
GlaI	GCGC	1 cut(s)	309
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	5 cut(s)	32, 302, 329, 389, 527
HapII	CCGG	7 cut(s)	114, 281, 428, 515, 569, 608, 626
HhaI	GCGC	1 cut(s)	310
Hin1I	GRCGYC	2 cut(s)	308, 509
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	1 cut(s)	163
HpaII	CCGG	7 cut(s)	114, 281, 428, 515, 569, 608, 626
HphI	GGTGA	6 cut(s)	50, 127, 250, 460, 544, 622
Hpy188III	TCNNGA	2 cut(s)	73, 181
Hpy99I	CGWCG	1 cut(s)	514
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	509
HpyF10VI	GCNNNNNNNGC	9 cut(s)	38, 281, 302, 338, 383, 461, 485, 488, 635
HpyF3I	CTNAG	3 cut(s)	318, 342, 417
HpySE526I	ACGT	1 cut(s)	509
Hsp92I	GRCGYC	2 cut(s)	308, 509
HspAI	GCGC	1 cut(s)	308
KasI	GGCGCC	1 cut(s)	307
KroI	GCCGGC	1 cut(s)	427
KroNI	GCCGGC	1 cut(s)	429
Ksp22I	TGATCA	1 cut(s)	78
KspI	CCGCGG	2 cut(s)	306, 333
Kzo9I	GATC	3 cut(s)	44, 78, 132
LmnI	GCTCC	4 cut(s)	275, 283, 571, 628
Lsp1109I	GCAGC	6 cut(s)	205, 262, 349, 421, 448, 466
MaeII	ACGT	1 cut(s)	509
MaeIII	GTNAC	1 cut(s)	255
MalI	GATC	3 cut(s)	46, 80, 134
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	3 cut(s)	44, 78, 132
MboII	GAAGA	6 cut(s)	217, 253, 532, 565, 604, 625
Mly113I	GGCGCC	1 cut(s)	308
MnlI	CCTC	7 cut(s)	102, 142, 523, 567, 576, 609, 624
MroNI	GCCGGC	1 cut(s)	427
MroXI	GAANNNNTTC	1 cut(s)	248
MspA1I	CMGCKG	3 cut(s)	275, 305, 332
MspI	CCGG	7 cut(s)	114, 281, 428, 515, 569, 608, 626
MspR9I	CCNGG	2 cut(s)	115, 516
MvnI	CGCG	3 cut(s)	305, 332, 386
MwoI	GCNNNNNNNGC	9 cut(s)	38, 281, 302, 338, 383, 461, 485, 488, 635
NaeI	GCCGGC	1 cut(s)	429
NarI	GGCGCC	1 cut(s)	308
NciI	CCSGG	2 cut(s)	115, 516
NdeII	GATC	3 cut(s)	44, 78, 132
NgoMIV	GCCGGC	1 cut(s)	427
NlaIV	GGNNCC	3 cut(s)	309, 567, 624
NmeAIII	GCCGAG	1 cut(s)	553
PcsI	WCGNNNNNNNCGW	1 cut(s)	506
PdiI	GCCGGC	1 cut(s)	429
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	163
PflFI	GACNNNGTC	1 cut(s)	115
PluTI	GGCGCC	1 cut(s)	311
PspN4I	GGNNCC	3 cut(s)	309, 567, 624
PspPI	GGNCC	1 cut(s)	111
PsyI	GACNNNGTC	1 cut(s)	115
SacII	CCGCGG	2 cut(s)	306, 333
Sau3AI	GATC	3 cut(s)	44, 78, 132
Sau96I	GGNCC	1 cut(s)	111
ScrFI	CCNGG	2 cut(s)	115, 516
SfoI	GGCGCC	1 cut(s)	309
Sfr303I	CCGCGG	2 cut(s)	306, 333
SgrAI	CRCCGGYG	1 cut(s)	607
SgrBI	CCGCGG	2 cut(s)	306, 333
SinI	GGWCC	1 cut(s)	111
SspDI	GGCGCC	1 cut(s)	307
StyD4I	CCNGG	2 cut(s)	113, 514
StyI	CCWWGG	4 cut(s)	27, 372, 483, 540
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	512
TaqI	TCGA	3 cut(s)	72, 119, 500
TauI	GCSGC	8 cut(s)	52, 89, 305, 308, 332, 389, 434, 491
TfiI	GAWTC	1 cut(s)	163
TscAI	CASTG	2 cut(s)	303, 567
TseI	GCWGC	6 cut(s)	218, 275, 362, 434, 461, 479
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	2 cut(s)	303, 567
Tth111I	GACNNNGTC	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	111
XmnI	GAANNNNTTC	1 cut(s)	248
ZraI	GACGTC	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.